BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140772.6 + phase: 0 /partial
(40 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9LW42 Helicase-like protein [Arabidopsis thaliana] 50 2e-05
UniRef100_Q9LX60 Hypothetical protein F4M19_60 [Arabidopsis thal... 47 1e-04
UniRef100_Q8RV60 Hypothetical protein At2g05640 [Arabidopsis tha... 47 1e-04
UniRef100_Q7XW15 OSJNBb0013O03.3 protein [Oryza sativa] 47 2e-04
UniRef100_Q9C8B0 Hypothetical protein F10O5.11 [Arabidopsis thal... 46 2e-04
UniRef100_Q9C8V4 Hypothetical protein T22A15.15 [Arabidopsis tha... 46 2e-04
UniRef100_Q6YTQ6 Helicase-like protein [Oryza sativa] 46 3e-04
UniRef100_Q6YSD5 Helicase-like protein [Oryza sativa] 46 3e-04
UniRef100_Q9SH75 Putative helicase [Arabidopsis thaliana] 45 4e-04
UniRef100_Q9LTU4 Helicase-like protein [Arabidopsis thaliana] 45 5e-04
UniRef100_O82606 T2L5.8 protein [Arabidopsis thaliana] 45 7e-04
UniRef100_Q8LRG5 Putative helicase [Oryza sativa] 45 7e-04
UniRef100_Q94LS7 Putative helicase [Oryza sativa] 43 0.002
UniRef100_Q7XDN7 Hypothetical protein [Oryza sativa] 43 0.003
UniRef100_Q94LS3 Putative helicase [Oryza sativa] 43 0.003
UniRef100_Q84QR0 Helicase-like protein [Oryza sativa] 41 0.008
UniRef100_Q9SY47 Hypothetical protein T5L23.19 [Arabidopsis thal... 41 0.008
UniRef100_Q5W673 Putative helicase [Oryza sativa] 41 0.010
UniRef100_Q5VR06 Helicase-like protein [Oryza sativa] 41 0.010
UniRef100_Q65XV4 Hypothetical protein P0016H04.14 [Oryza sativa] 41 0.010
>UniRef100_Q9LW42 Helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV S+GGLK+LI D G N ++V+++E+FRN
Sbjct: 1629 LYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRN 1668
>UniRef100_Q9LX60 Hypothetical protein F4M19_60 [Arabidopsis thaliana]
Length = 1752
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG+ ++V+++EVF+N
Sbjct: 1711 LYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQN 1750
>UniRef100_Q8RV60 Hypothetical protein At2g05640 [Arabidopsis thaliana]
Length = 1308
Score = 47.0 bits (110), Expect = 1e-04
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV SR GLKILI D++G+ ++V+++EVF+N
Sbjct: 1261 LYVAVSRVKSRRGLKILIIDEEGNRGKTTTNVVFKEVFQN 1300
>UniRef100_Q7XW15 OSJNBb0013O03.3 protein [Oryza sativa]
Length = 2052
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV ISR TSR GLKILI DD+ + S+V+Y E+ R+
Sbjct: 1378 LYVVISRATSRSGLKILIEDDNESCASETSNVVYHEILRS 1417
>UniRef100_Q9C8B0 Hypothetical protein F10O5.11 [Arabidopsis thaliana]
Length = 1678
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG ++V+++EVF+N
Sbjct: 1637 LYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQN 1676
>UniRef100_Q9C8V4 Hypothetical protein T22A15.15 [Arabidopsis thaliana]
Length = 729
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG ++V+++EVF+N
Sbjct: 688 LYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQN 727
>UniRef100_Q6YTQ6 Helicase-like protein [Oryza sativa]
Length = 1430
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1351 LYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1387
>UniRef100_Q6YSD5 Helicase-like protein [Oryza sativa]
Length = 1516
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1437 LYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1473
>UniRef100_Q9SH75 Putative helicase [Arabidopsis thaliana]
Length = 1241
Score = 45.4 bits (106), Expect = 4e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK+LI D +G+ + +V+++E+F+N
Sbjct: 1199 LYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQN 1238
>UniRef100_Q9LTU4 Helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 45.1 bits (105), Expect = 5e-04
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D +G ++V+++EVF+N
Sbjct: 1388 LYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQN 1427
>UniRef100_O82606 T2L5.8 protein [Arabidopsis thaliana]
Length = 1073
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK LI D DG ++V+++EVF+N
Sbjct: 1032 LYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQN 1071
>UniRef100_Q8LRG5 Putative helicase [Oryza sativa]
Length = 1453
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV +SR TSR GL+ILI DDDG ++ +V+Y EV
Sbjct: 1401 LYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1437
>UniRef100_Q94LS7 Putative helicase [Oryza sativa]
Length = 1573
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
LYV +SRVTSR GLKI+I D + + +++Y+E+F+
Sbjct: 1535 LYVAVSRVTSRDGLKIMIADKECPGEGMVKNIVYKEIFQ 1573
>UniRef100_Q7XDN7 Hypothetical protein [Oryza sativa]
Length = 1477
Score = 42.7 bits (99), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
LYV +SRVTSR GLKILI D++ + +++Y+E+ +
Sbjct: 1439 LYVAVSRVTSRDGLKILIADEECPGEGMVKNIVYKEILQ 1477
>UniRef100_Q94LS3 Putative helicase [Oryza sativa]
Length = 1501
Score = 42.7 bits (99), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
LYV +SRVTSR GLKILI D++ + +++Y+E+ +
Sbjct: 1463 LYVAVSRVTSRDGLKILIADEECPGEGMVKNIVYKEILQ 1501
>UniRef100_Q84QR0 Helicase-like protein [Oryza sativa]
Length = 1330
Score = 41.2 bits (95), Expect = 0.008
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVF 38
LYV +SRVTS GL+ILIN + + + +V+Y E+F
Sbjct: 1285 LYVALSRVTSPKGLRILINSNSSSNEHCTQNVVYHEIF 1322
>UniRef100_Q9SY47 Hypothetical protein T5L23.19 [Arabidopsis thaliana]
Length = 570
Score = 41.2 bits (95), Expect = 0.008
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV S+ LK+LI D G ++VI++E+F+N
Sbjct: 529 LYVAMSRVKSKARLKVLITDSKGKQKKETTNVIFKEIFQN 568
>UniRef100_Q5W673 Putative helicase [Oryza sativa]
Length = 1634
Score = 40.8 bits (94), Expect = 0.010
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVF 38
LYV SRVT R GL+I+++D++ ++ +++Y+E+F
Sbjct: 1597 LYVAFSRVTRRDGLRIMLDDNESPGEHMVRNIVYKEIF 1634
>UniRef100_Q5VR06 Helicase-like protein [Oryza sativa]
Length = 1427
Score = 40.8 bits (94), Expect = 0.010
Identities = 18/37 (48%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRV++ GLKILI ++DG +++YRE+
Sbjct: 1385 LYVAISRVSNSKGLKILIENEDGTCATQTKNIVYREI 1421
>UniRef100_Q65XV4 Hypothetical protein P0016H04.14 [Oryza sativa]
Length = 1525
Score = 40.8 bits (94), Expect = 0.010
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVF 38
LYV SRVT R GL+I+++D++ ++ +++Y+E+F
Sbjct: 1488 LYVAFSRVTRRDGLRIMLDDNESPGEHMVRNIVYKEIF 1525
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.318 0.139 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,113,955
Number of Sequences: 2790947
Number of extensions: 1451939
Number of successful extensions: 4082
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4051
Number of HSP's gapped (non-prelim): 36
length of query: 40
length of database: 848,049,833
effective HSP length: 16
effective length of query: 24
effective length of database: 803,394,681
effective search space: 19281472344
effective search space used: 19281472344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC140772.6