BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.12 - phase: 0
(504 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9LHR0 Non-LTR retrolelement reverse transcriptase-lik... 174 5e-42
UniRef100_O23411 Hypothetical protein AT4g15600 [Arabidopsis tha... 172 2e-41
UniRef100_Q9XE43 Putative non-LTR retrolelement reverse transcri... 169 2e-40
UniRef100_Q9SJW1 Hypothetical protein At2g01050 [Arabidopsis tha... 167 9e-40
UniRef100_O80791 Putative Ta11-like non-LTR retroelement protein... 153 1e-35
UniRef100_Q9LE84 Hypothetical protein AT4g08820 [Arabidopsis tha... 105 3e-21
UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like... 89 4e-16
UniRef100_Q9LEV4 Hypothetical protein T30N20_120 [Arabidopsis th... 70 1e-10
UniRef100_Q9LNZ2 F9C16.26 [Arabidopsis thaliana] 62 3e-08
UniRef100_Q7X6H2 OSJNBb0003A12.9 protein [Oryza sativa] 61 7e-08
UniRef100_O81068 Putative non-LTR retroelement reverse transcrip... 61 9e-08
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa] 60 1e-07
UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa] 60 1e-07
UniRef100_Q9ZVF0 Putative non-LTR retroelement reverse transcrip... 60 1e-07
UniRef100_Q9M187 Hypothetical protein T5C2_20 [Arabidopsis thali... 59 3e-07
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa] 58 6e-07
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa] 58 6e-07
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 56 2e-06
UniRef100_Q8S9E3 ORF285 [Silene latifolia] 54 8e-06
UniRef100_Q9FG64 Similarity to Ta11-like non-LTR retroelement pr... 52 5e-05
>UniRef100_Q9LHR0 Non-LTR retrolelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 591
Score = 174 bits (441), Expect = 5e-42
Identities = 88/227 (38%), Positives = 128/227 (55%)
Query: 45 IPIREKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNT 104
IP ++ K V ++ G P I I + + WK + VK+LG+ +
Sbjct: 35 IPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAA 94
Query: 105 MKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ RL+++WK G ++D FFMV+F++ + +TGGPW F CL V W+PEF
Sbjct: 95 VSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEF 154
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
++ T +WVR + + +Y +S L+++A LGRP+KVD L ERG+FARVCVE
Sbjct: 155 NPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVE 214
Query: 225 IDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPS 271
+DL P+ G + VNG Y V YEGL IC+ CG YGHL NC ++ S
Sbjct: 215 VDLKRPLQGALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELS 261
>UniRef100_O23411 Hypothetical protein AT4g15600 [Arabidopsis thaliana]
Length = 655
Score = 172 bits (437), Expect = 2e-41
Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Query: 45 IPIREK--ENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
+P+ E ++ + +R+E +G P I IE + + +K ++VK+LG+
Sbjct: 48 VPVPESVLDDDFVRSRMRLEFPDGVDGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTI 107
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
+ +L+ +W+ GG ++D FFMV+F+ D +TGGPW + L V W+P
Sbjct: 108 EVLSRKLRDLWRPTGGMSVLDLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSP 167
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
EF ++ T VWVR L + +Y LL +A+ LG+PIKVD TL+ ERG+FARVC
Sbjct: 168 EFNPLRDVIETTPVWVRVANLPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVC 227
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
VE++L P+ G + VNG Y V YEGL IC+ CG YGH NC
Sbjct: 228 VEVNLKNPLKGTLVVNGERYFVSYEGLQTICSLCGIYGHTVNNC 271
>UniRef100_Q9XE43 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 169 bits (427), Expect = 2e-40
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 3/221 (1%)
Query: 59 VRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG 118
+R+E G I I + + + WK +VVK+LG+++ + RL+++WK QG
Sbjct: 24 MRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGA 83
Query: 119 FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWV 178
++D FFM++F++ + +TGGPW F L V W+PEF ++ T +WV
Sbjct: 84 MFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWV 143
Query: 179 RFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVN 238
R + L Y S L+ +A +LG+P+KVD TL VER +FAR+C+E+DL P+ G + +N
Sbjct: 144 RLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLN 203
Query: 239 GHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
G Y V YEGL IC+ CG YGHL C P T + N
Sbjct: 204 GERYFVSYEGLANICSRCGMYGHLIHTC---PQTIAEKEVN 241
>UniRef100_Q9SJW1 Hypothetical protein At2g01050 [Arabidopsis thaliana]
Length = 515
Score = 167 bits (422), Expect = 9e-40
Identities = 84/250 (33%), Positives = 137/250 (54%), Gaps = 11/250 (4%)
Query: 21 PPDTIKQSSQKPSFRDKLLESNQDIPIREKENMIEKKLVR----IELEEGNRLLPKIYIE 76
PPD ++ + K ++ + I + E++I+ + VR +E +G P I I
Sbjct: 14 PPDKLESWATK-------VKGSAGGGILKPEDVIDDEFVRERVGLEFPDGEDEEPVITIG 66
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
+ + + WK ++VK+LG + + + +L+++WK G +MD FFM++F+
Sbjct: 67 EEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELE 126
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAM 196
+ +TGGPW + + L V W+ F + T VWVR + YY L+ +
Sbjct: 127 EEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEI 186
Query: 197 ASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNC 256
A LGRP+KVD NT+ ++G+FARVC+E++L P+ G + +NG Y V YEGL IC++C
Sbjct: 187 ARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFVAYEGLSKICSSC 246
Query: 257 GCYGHLGRNC 266
G YGHL +C
Sbjct: 247 GIYGHLVHSC 256
>UniRef100_O80791 Putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 409
Score = 153 bits (386), Expect = 1e-35
Identities = 77/198 (38%), Positives = 111/198 (55%), Gaps = 7/198 (3%)
Query: 91 LVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLI 150
LVVK+LG+ + + RL+++WK GG +++ FFMVKFD D G PW +
Sbjct: 33 LVVKVLGRHITIADLNRRLRELWKPNGGMSVLNLPRSFFMVKFDLEEDYLAAAIGDPWRV 92
Query: 151 FDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNT 210
L + W+P+F ++ T+VWVR L + YY E+ L A+ LG+PIKV+
Sbjct: 93 LGSILMIRAWSPDFNPIRDEIVTTLVWVRISNLPVNYYHETILTAIVEGLGKPIKVNLTI 152
Query: 211 LKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKP 270
L+ ER FARVCV+++L P+ G + VNG Y YEGL++IC+ CG +GHL C +
Sbjct: 153 LRKERAHFARVCVKVNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPK-- 210
Query: 271 STFDPRSPNHHTAGGNNP 288
RSP G +P
Sbjct: 211 -----RSPGPVVQAGASP 223
>UniRef100_Q9LE84 Hypothetical protein AT4g08820 [Arabidopsis thaliana]
Length = 404
Score = 105 bits (262), Expect = 3e-21
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 47 IREKENMIE----KKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
I + EN+I+ ++ VR+E G P I I + + + WK ++VK
Sbjct: 13 ILKPENVIDDAFVRERVRLEFPNGEDGEPVITIGEEVLEAMNGLWKRCMIVK-------- 64
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
FFM++F+ + +TGGPW +F + L V W+P
Sbjct: 65 -------------------------FFMIRFELEEEYLAALTGGPWRVFGNYLMVQDWSP 99
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
F + T VWVR + + YY L +A LG+ +KVD NT+ RG+FARVC
Sbjct: 100 NFDPLRDDIVTTPVWVRLTNIPVNYYHRCLLEEIARGLGKLLKVDLNTITFGRGRFARVC 159
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYE 247
+E++L P+ G + +NG Y V YE
Sbjct: 160 IEVNLAKPLKGTVLINGDRYFVAYE 184
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 88.6 bits (218), Expect = 4e-16
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 20 KPPDTIKQSSQKPSFRDKLLESNQD---IPIREKENMIEKKLVRIELEEGNRLLPKIYIE 76
+PPD + S+ DK+ +SN +P R ++ +R+E G P + I+
Sbjct: 22 RPPDGCVPMAAV-SWVDKVQKSNGGGLPVPERVIDDEFIASRMRVEFPNGEDGEPVVTID 80
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
P+ + WK +VVK+LG+ + + +L+++WK +GG ++D FF+V+FD
Sbjct: 81 PEVVDAMNGLWKLCMVVKVLGRHVSIAALSRKLRELWKPRGGMYVLDLPRQFFVVRFDVE 140
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVW 177
D +TGGPW +F L W+PEF ++ +T VW
Sbjct: 141 EDYLAAVTGGPWRLFGSVLMGQAWSPEFNPLKDEISKTPVW 181
>UniRef100_Q9LEV4 Hypothetical protein T30N20_120 [Arabidopsis thaliana]
Length = 181
Score = 70.1 bits (170), Expect = 1e-10
Identities = 32/104 (30%), Positives = 58/104 (55%)
Query: 61 IELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFD 120
+E +G P I I + + K++L+VK+ G+++ + + +L+++WK +G
Sbjct: 67 LEFPDGEDGEPVITIGSEVLAAMNGLLKNSLIVKVPGRNMTISALSRKLREMWKPRGAMS 126
Query: 121 IMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
++D FFM++F+ + +TGGPW FD L V W+PEF
Sbjct: 127 VVDLPRKFFMIRFEAEEEYMAALTGGPWRAFDRYLMVQAWSPEF 170
>UniRef100_Q9LNZ2 F9C16.26 [Arabidopsis thaliana]
Length = 1902
Score = 62.4 bits (150), Expect = 3e-08
Identities = 51/209 (24%), Positives = 78/209 (36%), Gaps = 8/209 (3%)
Query: 63 LEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIM 122
+E+G P + P + WK LV + G S + + L IW GG +
Sbjct: 1196 MEDGT---PVVIAPPCVLLKSVEMWKGHLVAQFYGLSPSPAKIFNDLNPIWGRYGGITVR 1252
Query: 123 DNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPG 182
M+ + ++ V+ G W + V HW+ E ++ W
Sbjct: 1253 VISQTAAMIFIPSVSTRQWVMDVGFWQAGNCSCTVYHWSSEGLREFKELQSAPTWAILKN 1312
Query: 183 LNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVP-----VVGKIWV 237
+ Y + +AS +G P+ + + L +V V I L +P VV I
Sbjct: 1313 VPPQLYSLDGISVIASGIGEPLHTEKSKLDPINIGTTKVKVVIKLDIPLPDSVVVKDIHG 1372
Query: 238 NGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
N V+Y C NCGCYGHL C
Sbjct: 1373 NSAKISVEYPRPPPKCLNCGCYGHLLSRC 1401
>UniRef100_Q7X6H2 OSJNBb0003A12.9 protein [Oryza sativa]
Length = 884
Score = 61.2 bits (147), Expect = 7e-08
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 126 NGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNL 185
+ F++ F D + VI GGPWL L V + +D +W+R L L
Sbjct: 170 DNLFIINFKAEGDYKFVIQGGPWLHKGDALLVAEFDGLTCPSEVSLDVVTIWIRIYDLPL 229
Query: 186 VYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNG------ 239
V ++ S G+ +VD R F R+ VE+ + P KI +
Sbjct: 230 VLMTKAIGELYGSKFGKVREVDVEEDGRNRHDFFRIRVELPVKKPPKSKIAIKTTVHGVE 289
Query: 240 --HWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFD 274
+ V+YE + C CG GH ++C +K S D
Sbjct: 290 AVRRFDVRYERVPFFCFICGYIGHSVKDCEKKISNMD 326
>UniRef100_O81068 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 60.8 bits (146), Expect = 9e-08
Identities = 67/322 (20%), Positives = 129/322 (39%), Gaps = 15/322 (4%)
Query: 73 IYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG---FDIMDNDNGFF 129
+ + + F++ W D L+ + S + + KIW L D D
Sbjct: 51 VQVPNEIFEDSTPLWDDLLIGRFPQISPHIAKVHVIVNKIWPLGDKTVKIDAYVVDTKTI 110
Query: 130 MVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYD 189
+ +++ + +V+ G W I D + V+ W+P ++ +W+ + +
Sbjct: 111 KFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWITIKNVPRSMFT 170
Query: 190 ESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-----WYKV 244
L +AS +G P K+ +T+ + A+V VE DLT + + +
Sbjct: 171 WKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSETGVDAMVEY 230
Query: 245 QYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPNH-HTAGGNNPPSNPEPSQPRQNPTQ 303
+Y L C++C +GH+ C+ +PS +P T PP E +P + ++
Sbjct: 231 KYPWLPPRCSSCSKWGHIQEVCLTRPSPNQLSTPTEIETEDKTEPPLMKE--KPLEILSK 288
Query: 304 TCPDAINSQLMACNQNGNSIIDHNKDVTANK-RNAINRIDDNQVLHGDWLVVTRRKKTPI 362
+ P A ++ + + + + N V NK + ++N G W V+ K
Sbjct: 289 S-PSATLTKTLNGDSHTQKVPMKNPTVLQNKGKEVAEENEENLKDEGPWHTVS-PAKVGR 346
Query: 363 QHSLNASKSVTHKT-NRFQALS 383
Q S + V H + +RF L+
Sbjct: 347 QRSPQPQEVVNHASPSRFDVLA 368
>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
Length = 1711
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/169 (24%), Positives = 73/169 (42%), Gaps = 8/169 (4%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+++ W+L+ + F+V F D + V+ GGPWL L V + +
Sbjct: 189 MRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSM 248
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
++ +WVR L LV ++ + S LG+ +VD + F R+ V++ +
Sbjct: 249 VPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVN 308
Query: 229 VP----VVGKIWVNG----HWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269
P + KI V G + ++YE + C CG GH + C ++
Sbjct: 309 RPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKR 357
>UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa]
Length = 1285
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/169 (24%), Positives = 73/169 (42%), Gaps = 8/169 (4%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+++ W+L+ + F+V F D + V+ GGPWL L V + +
Sbjct: 189 MRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSM 248
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
++ +WVR L LV ++ + S LG+ +VD + F R+ V++ +
Sbjct: 249 VPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVN 308
Query: 229 VP----VVGKIWVNG----HWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269
P + KI V G + ++YE + C CG GH + C ++
Sbjct: 309 RPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKR 357
>UniRef100_Q9ZVF0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 60.1 bits (144), Expect = 1e-07
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 29/278 (10%)
Query: 25 IKQSSQKPSFRDKLLESNQDI---PIRE-------KENMIEKKLVRIELE-EGNRLLPKI 73
+ S Q P+ LE+ Q + P ++ K ++K V E++ + ++PK
Sbjct: 48 VSDSDQFPALSQSALETTQRMSHPPAKKSWVNAARKHTFTQQKFVSEEVDGQATVVVPK- 106
Query: 74 YIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKDRLQKIWKLQGGFDIMD----NDNGF 128
+ F W+D L+ L K+ + + KIW+L +++D ND+
Sbjct: 107 ----EVFLGAKPLWEDFLIGHFLNAKAPHVGKIHMIVNKIWRLGDKSNLIDVYAVNDSTI 162
Query: 129 FMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYY 188
+ A + + + G W I D + V+ W+P + +W+ + +
Sbjct: 163 -KFRIRNEAMRRRALNRGMWNIMDLPMVVSKWSPFAEETQPAMKSIQLWITLTDVPPSLF 221
Query: 189 DESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-------W 241
+ L +ASA+G+PI++ T A++ VE DLT + + G
Sbjct: 222 TDKGLEFLASAVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAV 281
Query: 242 YKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
K Y L C+ C +GHL +C+ T +PN
Sbjct: 282 IKYSYPWLPPRCSCCDKWGHLRDSCLSALKTCSRDTPN 319
>UniRef100_Q9M187 Hypothetical protein T5C2_20 [Arabidopsis thaliana]
Length = 510
Score = 59.3 bits (142), Expect = 3e-07
Identities = 51/244 (20%), Positives = 103/244 (41%), Gaps = 18/244 (7%)
Query: 49 EKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKD 107
+K + ++K +E++ K+ + + F W+D LV +L K+ +
Sbjct: 91 QKRSFTKQKFEVVEVDGQE----KVVVPKEVFLGAKPLWEDFLVGNILNSKAPHVGKIHM 146
Query: 108 RLQKIWKLQGG---FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ KIW+L D+++ + + A + +++ W I + ++ WTP
Sbjct: 147 IVNKIWRLGDKSTLIDVLEVNESTVKFRVRNEAMRHRILNRRMWNIMGLPMIISKWTPYS 206
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
+ +WV + L + + L +AS +G+P+++ T E + A++ VE
Sbjct: 207 EDVQPALKSIPLWVTLSNVPLTMFTDKGLEFLASVVGKPVRLHPKTEACESFEEAKILVE 266
Query: 225 IDLTVPVVGKIWVNGH-------WYKVQYEGLHLICTNCGCYGHLGRNCM---EKPSTFD 274
DLT + + ++G Y L C C +GHL +C+ +KP++
Sbjct: 267 ADLTKDLPKEYILSGEEEGELDAVIHYSYPWLSPHCQVCKKWGHLRDSCLLEKQKPTSTL 326
Query: 275 PRSP 278
SP
Sbjct: 327 NNSP 330
>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
Length = 1694
Score = 58.2 bits (139), Expect = 6e-07
Identities = 40/168 (23%), Positives = 68/168 (39%), Gaps = 8/168 (4%)
Query: 107 DRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFAS 166
D +++ W+L+ + F++ F D + VI GGPW+ L V +
Sbjct: 290 DDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCP 349
Query: 167 PNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEID 226
N +D +WVR L LV + S LG+ +VD + F + V++
Sbjct: 350 SNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLP 409
Query: 227 LTVPVVGKIWVNG--------HWYKVQYEGLHLICTNCGCYGHLGRNC 266
+ P+ +I + + + YE + C CG GH R+C
Sbjct: 410 VKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 457
>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
Length = 1888
Score = 58.2 bits (139), Expect = 6e-07
Identities = 40/168 (23%), Positives = 68/168 (39%), Gaps = 8/168 (4%)
Query: 107 DRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFAS 166
D +++ W+L+ + F++ F D + VI GGPW+ L V +
Sbjct: 264 DDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCP 323
Query: 167 PNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEID 226
N +D +WVR L LV + S LG+ +VD + F + V++
Sbjct: 324 SNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLP 383
Query: 227 LTVPVVGKIWVNG--------HWYKVQYEGLHLICTNCGCYGHLGRNC 266
+ P+ +I + + + YE + C CG GH R+C
Sbjct: 384 VKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 431
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 56.2 bits (134), Expect = 2e-06
Identities = 40/169 (23%), Positives = 70/169 (40%), Gaps = 8/169 (4%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+++ W+L+ + F+V F+ D V+ G PWL L V +
Sbjct: 377 MRRAWRLRAEMSYKSLKDNLFIVSFNAEGDYNFVLQGDPWLHRGDALLVAEFNGLLNPSM 436
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
+D +WVR L LV + + S +G+ +VD + F R+ V++ +
Sbjct: 437 VNLDTVPIWVRIYDLPLVMMNRARGELYGSKMGKVREVDVQEDGCNKHDFFRIRVDLPVN 496
Query: 229 VP----VVGKIWVNG----HWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269
P + KI V G + ++YE + C CG GH + C ++
Sbjct: 497 RPLRRMLAIKIKVQGKEETRRFHLRYERVPHFCFFCGFIGHSDKECEKR 545
>UniRef100_Q8S9E3 ORF285 [Silene latifolia]
Length = 285
Score = 54.3 bits (129), Expect = 8e-06
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 87 WKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGG 146
WK++ + +LG + ++T++D + +W G + + F+V+F + E ++ G
Sbjct: 105 WKNSFICFILGANPPWDTLEDFIYWVWADYGVGRVSFLSSEVFLVRFRKQKYMEALLHHG 164
Query: 147 PWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKV 206
++ + L V WTP + A++ VWVR L L ++ + + +A LG ++
Sbjct: 165 HYVFDNRPLIVRPWTPNESLTKAEITVVPVWVRLLNLPLKFWG-NCIPWIAGLLGDYVRC 223
Query: 207 DTNTLKVERGKFARVCVEIDL--TVPVVGKIWVNGH---WYKVQYEGLHLICTNCGCYGH 261
D T R + RV +++ + P K KV+++ ++CT+ G GH
Sbjct: 224 DGATEDRTRLAYTRVLIDVTFGKSAPKDVKFLDESGELITLKVEFKWNPILCTDFGGVGH 283
>UniRef100_Q9FG64 Similarity to Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 361
Score = 51.6 bits (122), Expect = 5e-05
Identities = 42/151 (27%), Positives = 63/151 (40%), Gaps = 15/151 (9%)
Query: 125 DNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHW----TPEFASPNAKVDRTVVWVRF 180
D+ F V+F D + PW+ + +A+ W T +F + +D VWV
Sbjct: 74 DDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDFLT---FID---VWVHI 127
Query: 181 PGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPV-----VGKI 235
G+ L Y E + +AS LG + +D N + F RV V +D T P+ V
Sbjct: 128 RGIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFA 187
Query: 236 WVNGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
+YE L +CTNC H +C
Sbjct: 188 SRERAMIGFEYEKLQRVCTNCCRVNHQVSHC 218
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932,293,455
Number of Sequences: 2790947
Number of extensions: 41856524
Number of successful extensions: 145151
Number of sequences better than 10.0: 375
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 953
Number of HSP's that attempted gapping in prelim test: 143695
Number of HSP's gapped (non-prelim): 1447
length of query: 504
length of database: 848,049,833
effective HSP length: 132
effective length of query: 372
effective length of database: 479,644,829
effective search space: 178427876388
effective search space used: 178427876388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC140549.12