BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.4 - phase: 2 /pseudo
(30 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M2L7 Helicase-like protein [Arabidopsis thaliana] 38 0.067
UniRef100_UPI000043776E UPI000043776E UniRef100 entry 34 0.96
UniRef100_UPI000043776D UPI000043776D UniRef100 entry 34 0.96
UniRef100_UPI0000248C3A UPI0000248C3A UniRef100 entry 34 0.96
UniRef100_UPI000021E56F UPI000021E56F UniRef100 entry 34 0.96
UniRef100_UPI00001CF21C UPI00001CF21C UniRef100 entry 34 0.96
UniRef100_UPI0000364E51 UPI0000364E51 UniRef100 entry 34 0.96
UniRef100_UPI000036A009 UPI000036A009 UniRef100 entry 34 0.96
UniRef100_UPI00003ADD9A UPI00003ADD9A UniRef100 entry 34 0.96
UniRef100_UPI00003ADD98 UPI00003ADD98 UniRef100 entry 34 0.96
UniRef100_Q5SPB7 Novel protein [Brachydanio rerio] 34 0.96
UniRef100_Q5RGG8 Novel protein containing an SNF2 family N-termi... 34 0.96
UniRef100_Q6P7V0 Hypothetical protein [Mus musculus] 34 0.96
UniRef100_Q9ULG1 KIAA1259 protein [Homo sapiens] 34 0.96
UniRef100_UPI00003C12A6 UPI00003C12A6 UniRef100 entry 33 1.6
UniRef100_Q6ZPV2 MKIAA1259 protein [Mus musculus] 33 1.6
UniRef100_O43776 Asparaginyl-tRNA synthetase, cytoplasmic [Homo ... 32 4.8
UniRef100_UPI000036A44D UPI000036A44D UniRef100 entry 32 6.2
>UniRef100_Q9M2L7 Helicase-like protein [Arabidopsis thaliana]
Length = 1496
Score = 38.1 bits (87), Expect = 0.067
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 6 EVRKREEKEAAEALRRDQELREAKR 30
E RK++EKEAAEA +R+QE RE+KR
Sbjct: 426 EERKKQEKEAAEAFKREQEQRESKR 450
>UniRef100_UPI000043776E UPI000043776E UniRef100 entry
Length = 889
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 45 VEKEHRKRAEKEALEQRKLDEEMREAKR 72
>UniRef100_UPI000043776D UPI000043776D UniRef100 entry
Length = 1503
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 332 VEKEHRKRAEKEALEQRKLDEEMREAKR 359
>UniRef100_UPI0000248C3A UPI0000248C3A UniRef100 entry
Length = 906
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 45 VEKEHRKRAEKEALEQRKLDEEMREAKR 72
>UniRef100_UPI000021E56F UPI000021E56F UniRef100 entry
Length = 739
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 355 VEKEHRKRAEKEALEQRKLDEEMREAKR 382
>UniRef100_UPI00001CF21C UPI00001CF21C UniRef100 entry
Length = 1514
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 344 VEKEHRKRAEKEALEQRKLDEEMREAKR 371
>UniRef100_UPI0000364E51 UPI0000364E51 UniRef100 entry
Length = 1134
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 330 VEKEHRKRAEKEALEQRKLDEEMREAKR 357
>UniRef100_UPI000036A009 UPI000036A009 UniRef100 entry
Length = 1134
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 353 VEKEHRKRAEKEALEQRKLDEEMREAKR 380
>UniRef100_UPI00003ADD9A UPI00003ADD9A UniRef100 entry
Length = 567
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 40 VEKEHRKRAEKEALEQRKLDEEMREAKR 67
>UniRef100_UPI00003ADD98 UPI00003ADD98 UniRef100 entry
Length = 1565
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 358 VEKEHRKRAEKEALEQRKLDEEMREAKR 385
>UniRef100_Q5SPB7 Novel protein [Brachydanio rerio]
Length = 1552
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 343 VEKEHRKRAEKEALEQRKLDEEMREAKR 370
>UniRef100_Q5RGG8 Novel protein containing an SNF2 family N-terminal domain and a
Helicase conserved C-terminal domain [Brachydanio rerio]
Length = 1582
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 354 VEKEHRKRAEKEALEQRKLDEEMREAKR 381
>UniRef100_Q6P7V0 Hypothetical protein [Mus musculus]
Length = 1141
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 355 VEKEHRKRAEKEALEQRKLDEEMREAKR 382
>UniRef100_Q9ULG1 KIAA1259 protein [Homo sapiens]
Length = 1561
Score = 34.3 bits (77), Expect = 0.96
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 358 VEKEHRKRAEKEALEQRKLDEEMREAKR 385
>UniRef100_UPI00003C12A6 UPI00003C12A6 UniRef100 entry
Length = 1910
Score = 33.5 bits (75), Expect = 1.6
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 4 QTEVRKREEKEAAEALRRDQELREAKR 30
+ E+RK+ E+EA E ++++E+REAKR
Sbjct: 800 ERELRKKAEREALEKAKKEEEMREAKR 826
>UniRef100_Q6ZPV2 MKIAA1259 protein [Mus musculus]
Length = 1196
Score = 33.5 bits (75), Expect = 1.6
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 6 EVRKREEKEAAEALRRDQELREAKR 30
E RKR EKEA E + D+E+REAKR
Sbjct: 2 EHRKRAEKEALEQRKLDEEMREAKR 26
>UniRef100_O43776 Asparaginyl-tRNA synthetase, cytoplasmic [Homo sapiens]
Length = 548
Score = 32.0 bits (71), Expect = 4.8
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 71 HREQMKSESREKKEAEDSLRREKNLEEAKK 100
>UniRef100_UPI000036A44D UPI000036A44D UniRef100 entry
Length = 572
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 95 HREQMKNESREKKEAEDSLRREKNLEEAKK 124
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.306 0.120 0.290
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,516,291
Number of Sequences: 2790947
Number of extensions: 523682
Number of successful extensions: 5594
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5576
Number of HSP's gapped (non-prelim): 18
length of query: 30
length of database: 848,049,833
effective HSP length: 6
effective length of query: 24
effective length of database: 831,304,151
effective search space: 19951299624
effective search space used: 19951299624
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC140028.4