BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.7 + phase: 0 /pseudo
         (144 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_P96797 CoB--CoM heterodisulfide reductase iron-sulfur ...    33  1.0
UniRef100_Q8PVW3 CoB--CoM heterodisulfide reductase 2 iron-sulfu...    33  1.7
UniRef100_Q8TSV7 CoB--CoM heterodisulfide reductase 2 iron-sulfu...    32  2.3
UniRef100_UPI00001D0C89 UPI00001D0C89 UniRef100 entry                  30  8.6
UniRef100_Q61DA6 Hypothetical protein CBG12565 [Caenorhabditis b...    30  8.6

>UniRef100_P96797 CoB--CoM heterodisulfide reductase iron-sulfur subunit D
           [Methanosarcina barkeri]
          Length = 408

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           + Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 292 ITYHDPCHLGRHVGVFNAPRYVLSHIPGVKFVEMDRSKEFQRCCGAGGGV 341


>UniRef100_Q8PVW3 CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D
           [Methanosarcina mazei]
          Length = 409

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFDAPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>UniRef100_Q8TSV7 CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D
           [Methanosarcina acetivorans]
          Length = 409

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFEPPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>UniRef100_UPI00001D0C89 UPI00001D0C89 UniRef100 entry
          Length = 757

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 44 PCHERRRPRWWTRP-RVPLSCASGIKFREKQQRNEPRHRCGQSSNIC 89
          PC    RP WWTRP R+    A   K R   +  EP  R    +N C
Sbjct: 47 PC----RPLWWTRPYRMYRPLARRWKLRRAAREAEPWPRVSTGANTC 89


>UniRef100_Q61DA6 Hypothetical protein CBG12565 [Caenorhabditis briggsae]
          Length = 937

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 23/64 (35%), Positives = 29/64 (44%), Gaps = 5/64 (7%)

Query: 48  RRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSLWLIGKS-*SNNFT 106
           RRR R  +R R P S A+G  +R    R+  R R   SS        W   +S  SNN  
Sbjct: 175 RRRDRSHSRSRSPPSSANGSHYRSSSHRHSRRRRSRSSSR----DRDWNSRRSNTSNNDR 230

Query: 107 HSRW 110
           +S W
Sbjct: 231 YSEW 234


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.350    0.149    0.585 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,852,356
Number of Sequences: 2790947
Number of extensions: 7452720
Number of successful extensions: 20598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20595
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 848,049,833
effective HSP length: 120
effective length of query: 24
effective length of database: 513,136,193
effective search space: 12315268632
effective search space used: 12315268632
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 67 (30.4 bits)