BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139745.5 + phase: 0 /pseudo
         (2129 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]                 1803  0.0
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]                 1106  0.0
UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic ...   904  0.0
UniRef100_Q6L974 GAG-POL [Vitis vinifera]                             768  0.0
UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]                      762  0.0
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa...   752  0.0
UniRef100_Q7X6L5 OSJNBb0093G06.3 protein [Oryza sativa]               700  0.0
UniRef100_Q8LMM6 Putative gag-pol [Oryza sativa]                      698  0.0
UniRef100_Q75KG5 Putative polyprotein [Oryza sativa]                  698  0.0
UniRef100_Q7XXB9 OSJNBa0027O01.4 protein [Oryza sativa]               696  0.0
UniRef100_Q7XPQ7 OSJNBa0053K19.16 protein [Oryza sativa]              696  0.0
UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]                  696  0.0
UniRef100_Q8GSW6 Putative gag-pol polyprotein [Oryza sativa]          693  0.0
UniRef100_Q8W3B5 Putative gag-pol [Oryza sativa]                      692  0.0
UniRef100_Q8S7A3 Putative retroelement [Oryza sativa]                 692  0.0
UniRef100_Q7X8E7 OSJNBa0042F21.5 protein [Oryza sativa]               691  0.0
UniRef100_Q8LMM4 Putative gag-pol [Oryza sativa]                      691  0.0
UniRef100_Q75IS9 Putative polyprotein [Oryza sativa]                  691  0.0
UniRef100_Q7XWE4 OSJNBa0035O13.3 protein [Oryza sativa]               684  0.0
UniRef100_Q93Y89 Gag-pol [Oryza sativa]                               682  0.0

>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score = 1803 bits (4671), Expect = 0.0
 Identities = 839/1148 (73%), Positives = 1005/1148 (87%), Gaps = 10/1148 (0%)

Query: 985  NFDFPVYEAEDEEGDD--IPYEITRLLEQEKKAIQPHQEEIELINIGTEENKQEIKIGAT 1042
            +FD P+Y+AE+E  +D  +P E+ RLL+QE++ IQPHQEE+E++N+GTE+  +EIKIGA 
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAA 1180

Query: 1043 LEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMA 1102
            LE+ VK+++I++LREY +IFAWSY+DMPGLD  IV HR+P +  CP V+QKLRRT PDMA
Sbjct: 1181 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1240

Query: 1103 LKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 1162
             KIK EVQKQ DAGFL    YP W+ANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPH
Sbjct: 1241 TKIKEEVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1300

Query: 1163 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1222
            IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTFCYKVMPFGL NAGAT
Sbjct: 1301 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGAT 1360

Query: 1223 YQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 1282
            YQR MTTLFHDM+HKE+EVYVDDMI KS  EE+H+  L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1361 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1420

Query: 1283 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 1342
            VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC 
Sbjct: 1421 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1480

Query: 1343 PIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1402
            PIFKLLRKNQ + WND+CQ+AFD IK YL +PPIL+PPV GRPLIMYL+V + SMGCVLG
Sbjct: 1481 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLG 1540

Query: 1403 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1462
            + DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP
Sbjct: 1541 RHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1600

Query: 1463 IKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPD 1522
            +KYIFEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1601 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1660

Query: 1523 EEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARIL 1582
            E+IMYLK KDC+EPL+ EGPDP+ KW L+FDGAVN  G G+GAV+++P+G H+PF+AR+ 
Sbjct: 1661 EDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLT 1720

Query: 1583 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYAR 1642
            F+ TNN AEYEACI GIEEAID+RIK LDI+GDSALV+NQ+ G+W T+  +LIPYRDY R
Sbjct: 1721 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1780

Query: 1643 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDV 1702
            R+LT+F KV+L+H+PRDENQMADALATLSSM +VN WN VP + V RLERP++VFA   V
Sbjct: 1781 RILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV 1840

Query: 1703 IDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLD-GDILYKRNYD 1761
                   VID +PWYYDIK FL ++EYP GASK DKKTLRRLAG F L+  D+LYKRN+D
Sbjct: 1841 -------VIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFD 1893

Query: 1762 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHK 1821
            MVLLRC+D  EA+ LM +VH+G+FGTHA GH M++KLLRAGYYWM ME DC++YARKCHK
Sbjct: 1894 MVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHK 1953

Query: 1822 CQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 1881
            CQIYAD++HVPP  LNVM+SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDYFTKWVEAA
Sbjct: 1954 CQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAA 2013

Query: 1882 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 1941
            SY N+TKQVV +FIK  IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP
Sbjct: 2014 SYANITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRP 2073

Query: 1942 QMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2001
            +MNGAVEAANKNIK+IV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAV
Sbjct: 2074 KMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAV 2133

Query: 2002 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKV 2061
            LP+EVEIPSLRV+++ KL EAEW ++R+++L+LIEE+R+  +  GQ YQ RMK AFD+KV
Sbjct: 2134 LPVEVEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKV 2193

Query: 2062 HPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2121
             PR +++G+LVLKR +    D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN
Sbjct: 2194 RPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVN 2253

Query: 2122 ADIVKKYF 2129
            +D+VKKYF
Sbjct: 2254 SDVVKKYF 2261


>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score = 1106 bits (2860), Expect = 0.0
 Identities = 519/699 (74%), Positives = 614/699 (87%), Gaps = 4/699 (0%)

Query: 979  NPTVPPNFDF--PVYEAEDEEGDD--IPYEITRLLEQEKKAIQPHQEEIELINIGTEENK 1034
            N +V   +DF  P+Y+AE+E  +D  +P E+ RLL QE++ IQPHQEE+E++N+GTE+ K
Sbjct: 1115 NNSVMAQYDFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDAK 1174

Query: 1035 QEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKL 1094
            +EIKIGA LE+ VK+++I++LREY +IFAWSY+DMPGLD  IV HR+P +  CP V+QKL
Sbjct: 1175 REIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKL 1234

Query: 1095 RRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1154
            RRT PDMA KIK EVQKQ DAGFL    YP WVANIVPVPKKDGKVRMCVD+RDLN+ASP
Sbjct: 1235 RRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASP 1294

Query: 1155 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 1214
            KD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTF YKVMPF
Sbjct: 1295 KDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPF 1354

Query: 1215 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRL 1274
            GL NAGATYQR MTTLFHDM+HKE+EVYVDDMI KS  EE+H+  L K+F+RLRK+KLRL
Sbjct: 1355 GLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRL 1414

Query: 1275 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1334
            NPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFI
Sbjct: 1415 NPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFI 1474

Query: 1335 SHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFD 1394
            SH+TATC PIFKLLRKNQ + WND+CQ+AFD IK YL +PPIL PPV GRPLIMYL+V +
Sbjct: 1475 SHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTE 1534

Query: 1395 ESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTT 1454
             SMGCVLGQ DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT
Sbjct: 1535 NSMGCVLGQHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTT 1594

Query: 1455 WLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQ 1514
             LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQ
Sbjct: 1595 LLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQ 1654

Query: 1515 PIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHH 1574
            P+ F+FPDE+IMYLK KDCEEPL+ EGPDP+ KW L+FDGAVN  G G+GAV+++P+G H
Sbjct: 1655 PMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAH 1714

Query: 1575 IPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANL 1634
            IPF+AR+ F+ TNN AEYEACI GIEEAID+RIK LDIYGDSALV+NQ+ G+W T+  +L
Sbjct: 1715 IPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHL 1774

Query: 1635 IPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1673
            IPYRDY RR+LT+F KV L+H+PRDENQMADALATLSSM
Sbjct: 1775 IPYRDYTRRILTFFKKVRLYHVPRDENQMADALATLSSM 1813


>UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0433F09 [Oryza sativa]
          Length = 2876

 Score =  904 bits (2336), Expect = 0.0
 Identities = 480/1140 (42%), Positives = 685/1140 (59%), Gaps = 37/1140 (3%)

Query: 1004 EITRLLEQEKKAIQPHQEEIELINIGTEENKQEIKIGATLEEGVKQKVIQLLREYPDIFA 1063
            ++   L+Q     QP  +E+  +N+GTE++ + I +   L E  ++     L E+ D FA
Sbjct: 1759 DVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEFRDCFA 1818

Query: 1064 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEY 1123
            W+Y++MPGLD  +  H++   P+  PV+Q  RR  P+   ++  EV + I+ GF+  ++Y
Sbjct: 1819 WTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQY 1878

Query: 1124 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1183
            P W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP  +++VD+T            S
Sbjct: 1879 PRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG------YGALS 1932

Query: 1184 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1243
            GYNQIKM   D   T+F TP G F Y VMPFGL NAGATYQR M  +  D+IH  VE YV
Sbjct: 1933 GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYV 1992

Query: 1244 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1303
            DDM+VK+ D E H E L  +FERLR+++L++NP KC F V+SG  LGF++  +GIE++P 
Sbjct: 1993 DDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPK 2052

Query: 1304 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1363
            K++AI  MP PQ  K +R   G+L YI RFIS+++    P  KL++K  P VW++ECQ  
Sbjct: 2053 KIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNG 2112

Query: 1364 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTD 1423
            FDSIK YLL PP+L  PV+GRPLI+Y+A    S+G +L Q ++ G KE A YYLS+    
Sbjct: 2113 FDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVACYYLSRTMVG 2171

Query: 1424 CETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 1483
             E  Y+ +EK C AL +A K+LRHY++ H   LI+R DPI+Y+  +  +TG++ +W +L+
Sbjct: 2172 AEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLM 2231

Query: 1484 SEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPD 1543
             EYDI F  QKAIKG  LA+ LA  P+ D  P+  + PDEEI   + ++           
Sbjct: 2232 MEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE----------- 2280

Query: 1544 PNSKWGLVFDGA----VNAYG-----KGIGAVIVSPQGHHIPFTARIL-FECTNNMAEYE 1593
               +W L FDGA    +N  G      G G V  +PQG  I  +  +L  EC+NN AEYE
Sbjct: 2281 ---QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYE 2337

Query: 1594 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVEL 1653
            A IFG+  A+ M ++ L  +GDS L+I QI   +E     L+PY   ARRL+  F  +E+
Sbjct: 2338 ALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEV 2397

Query: 1654 HHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDY 1713
             H+PR +N  ADALA L++       N   I+  +R   P+ +  I + ++    N  + 
Sbjct: 2398 IHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEE 2457

Query: 1714 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDM-VLLRCVDEHE 1772
              W      +      P      +++ L+R    ++    +LYKR+Y   VLLRCVD  E
Sbjct: 2458 EDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSE 2515

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
            A +++ +VH G  G H +G  M   +   GYYW  +  DC + A+ CH CQI+ +  H P
Sbjct: 2516 ANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQP 2575

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
            P  L+     WPF  WGID+IG I P +S GHRFIL A DYF+KW EA     V    V 
Sbjct: 2576 PAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDVI 2635

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F++ +II R+GVP +I +DN     +  +    E++KI+ + S+ Y PQ NG  EA NK
Sbjct: 2636 NFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNK 2695

Query: 1953 NIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2011
             + +I++K V  + +DWH+ L  AL  YR TVR+ T ATP+SLVYG EAVLPLE+++PSL
Sbjct: 2696 TLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSL 2755

Query: 2012 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGE- 2070
            RV +  +L++ E  + R+ +L+ +EE+R+ A+   + Y+  M  A+DK V  R F+ GE 
Sbjct: 2756 RVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGEL 2815

Query: 2071 -LVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
             LVL+R I      +GK+ P +EGPYV+++A+ GGA  L    G +   P+N   +KKYF
Sbjct: 2816 VLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875


>UniRef100_Q6L974 GAG-POL [Vitis vinifera]
          Length = 1027

 Score =  768 bits (1983), Expect = 0.0
 Identities = 420/1063 (39%), Positives = 616/1063 (57%), Gaps = 39/1063 (3%)

Query: 1069 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1128
            M G+ P I  HR+       PVRQ++RR HPD    I+NE+ K ++AGF+  V YP+W+A
Sbjct: 1    MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60

Query: 1129 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1188
            N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+   + SF+D FSGY+QI
Sbjct: 61   NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120

Query: 1189 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1248
             MSP+D EK +FITP   +CYKVMPFGL NAGATYQR MT +F  +I   VEVY+DD++V
Sbjct: 121  PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180

Query: 1249 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1308
            KS   EQH+ +L ++F  LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181  KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240

Query: 1309 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIK 1368
             E P P+ +K+++   G+L  + RFI+       P F  +RK     W D CQ A + IK
Sbjct: 241  METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300

Query: 1369 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1428
            +YL++PPIL  P+    L MYLAV + ++  VL  +  + K++  IYY+S+   D ETRY
Sbjct: 301  HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359

Query: 1429 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1488
            + +E    AL  AA++LR Y   H   ++    P++ I  K  +TG++ +W + LSE+ I
Sbjct: 360  SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418

Query: 1489 VFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKW 1548
             F+ + ++KG ++AD +          +E+                +P  +EG      W
Sbjct: 419  EFQPRLSMKGQVMADFV----------LEYS--------------RKPGQHEGSRKKEWW 454

Query: 1549 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1608
             L  DGA  + G G+G ++ SP G H+    R+ F  +NN AEYEA + G++ A+ + + 
Sbjct: 455  TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514

Query: 1609 HLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALA 1668
             L I+ DS LV+  ++ E+E   A +  Y    R  L  FT+  +  I R +N+ ADALA
Sbjct: 515  KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574

Query: 1669 TLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSRE 1728
             +++   +     +P I VQ     S +     +         D + W  DI +++ +  
Sbjct: 575  GIAASLSIKEAILLP-IHVQTNPSVSEI----SICSTTEAPQADDQEWMNDITEYIRTGT 629

Query: 1729 YPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH 1788
              PG  KQ  K +R  A RF L G  LYKR++    LRC+   EA+ ++ ++H+G +G H
Sbjct: 630  L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687

Query: 1789 ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW 1848
            + G +++ +    GYYW  M+ +   Y ++C KCQ YA   H+P   L  +S PWPF+ W
Sbjct: 688  SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747

Query: 1849 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 1908
            G+D++ R  P A    +F+LVA DYF+KWVEA +Y +   + V KF+  NIICR+G+P  
Sbjct: 748  GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806

Query: 1909 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 1967
            II DNG   ++   +  C E  I +  S+P  PQ NG  EA NK +   ++K +   K  
Sbjct: 807  IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866

Query: 1968 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2027
            W E LP  L  YRTT    TG TPF+L YGM+AV+P+E+ +P++     AK S+A     
Sbjct: 867  WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925

Query: 2028 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPD-PRGK 2086
            R   L+  +E R  A  R   YQ R    +++KV PR  K G LVL++      +   GK
Sbjct: 926  R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983

Query: 2087 WTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
            +  N+EGPY+V KA   GA  L  +DG  L  P N   +K+Y+
Sbjct: 984  FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026


>UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  762 bits (1967), Expect = 0.0
 Identities = 431/1117 (38%), Positives = 633/1117 (56%), Gaps = 49/1117 (4%)

Query: 1024 ELINIGTEENKQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPT 1083
            E++NI   +  + + +GA +   ++ ++I LL+     FAWS EDM G+DP I  H +  
Sbjct: 759  EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818

Query: 1084 KPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1143
             P   PV+QK R+  P+ A  +  EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819  DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878

Query: 1144 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1203
            VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M  +D+EKTSF+T 
Sbjct: 879  VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938

Query: 1204 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKM 1263
             GT+CYKVM FGL NAGATYQR +  +  D I + VEVY+DDM+VKS   E HVE+L+K 
Sbjct: 939  RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998

Query: 1264 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1323
            F+ L  Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+  ++V+  
Sbjct: 999  FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058

Query: 1324 LGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEG 1383
             GR+  ++RFIS  T  C P + LL++     W+ + +EAF+ +K+YL  PPILV P  G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118

Query: 1384 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1443
              L +Y+AV D ++  VL ++D    ++  I+Y SK   + ETRY ++EK   A+  +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176

Query: 1444 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1503
            +LR Y  +HT  +++   P++      + +G++ +W + LSEYDI F+ + A+K  +LAD
Sbjct: 1177 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1235

Query: 1504 HLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGI 1563
             L   PL   +        EE                       W L  DG+ +A G GI
Sbjct: 1236 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1272

Query: 1564 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1623
            G  +VSP    +  + R+ F  TNN+AEYE  I G+  A  M+I  +  + DS L+  Q+
Sbjct: 1273 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1332

Query: 1624 KGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV- 1682
             GE+E  +  +  Y    + +   F   +L  IPR +N  ADALA L+    +   +D+ 
Sbjct: 1333 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1388

Query: 1683 PIIRVQRLERPS-----HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQD 1737
             II V+ +++PS      V  +  +      +  D   W  +I+ +L       G    D
Sbjct: 1389 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSD 1443

Query: 1738 KKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1794
            K T RRL   A ++ L  + L K +    +L C+   E  ++M + H+G  G H+ G  +
Sbjct: 1444 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1503

Query: 1795 SRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIG 1854
            + KL + G+YW  M  DC  +  KC +CQ +A  IH P   L    +P+PF  W +D++G
Sbjct: 1504 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1563

Query: 1855 RIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNG 1914
             +   AS   RFILV  DYFTKWVEA SY  +    V  F+   IICR+G+P +IITDNG
Sbjct: 1564 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1621

Query: 1915 TNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLP 1973
            +   +   +  C  +KI  + S+P  PQ NG  EA NK I   ++K +   K  W + L 
Sbjct: 1622 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1681

Query: 1974 YALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLN 2033
              L  YRTT RS+T  TPF+  YGMEA+ P EV   SLR  M  K  E    +   D+L+
Sbjct: 1682 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1740

Query: 2034 LIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPD-PRGKWTPNYE 2092
             +EE R  A+ R Q+YQ      +++KVH R F VG+LVL++      +   GK   N+E
Sbjct: 1741 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1800

Query: 2093 GPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
            G Y V K    G   L  M G  +P   N+  +K+Y+
Sbjct: 1801 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837


>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score =  752 bits (1941), Expect = 0.0
 Identities = 421/1105 (38%), Positives = 630/1105 (56%), Gaps = 66/1105 (5%)

Query: 1032 ENKQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1091
            ++ +EI I   + +G +  +I+LL+E+ D F W Y +MPG    IVEHR+P KP   P +
Sbjct: 528  DDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQ 586

Query: 1092 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1151
            Q  RR   DM   +K E+++  DAGF+    Y EWV++IVPV KK+GKVR+C+DFR LNK
Sbjct: 587  QLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNK 646

Query: 1152 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCY 1209
            A+PKD +P+   D LVD  +  K+ SFMDG +GYNQI M+ ED  KT+F  P   G F +
Sbjct: 647  ATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEW 706

Query: 1210 KVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRK 1269
             V+ F L +AGATYQR M  ++HD+I   VEVY+DD++VKS + E H+  L K+FER RK
Sbjct: 707  VVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRK 766

Query: 1270 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNY 1329
            Y L++NP KC FGV +G+ LGF+V ++GIEV    + AI+++  P+ + +++  +G++N+
Sbjct: 767  YGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINF 826

Query: 1330 ISRFISHMTATCGPIFKLLR--KNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLI 1387
            + RFIS ++    P   LLR   +Q   W  E Q+A D+IK YL  PP+L+PP +G P  
Sbjct: 827  VRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFR 886

Query: 1388 MYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 1447
            +YL+  D+S+  VL Q+ E  +KE  ++YLS++  + ETRY+ +EK C  L ++  RLRH
Sbjct: 887  LYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRH 944

Query: 1448 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1507
            YL+++   +I + D +KY+     + G+I +W   L+E+D+ +++ KAIKG  +A+ +  
Sbjct: 945  YLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV- 1003

Query: 1508 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVI 1567
                       D+ D+ I               G      W L FDG+V  +G GIG VI
Sbjct: 1004 -----------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGIGLVI 1037

Query: 1568 VSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEW 1627
            +SP+G    F   I    TNN AEYEA + G++   ++    ++I GDS LVI+Q+ GE+
Sbjct: 1038 ISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEY 1097

Query: 1628 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRV 1687
            E  +  LI Y +  + L+  F  V L H+ R++N  A+ LA  +S +++           
Sbjct: 1098 ECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYKL----------- 1146

Query: 1688 QRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1747
                   HV        Q    VI    W Y + Q+L         S+   + LR  A +
Sbjct: 1147 ----MIKHV--------QIEVAVITADDWRYYVYQYL------QDPSQSASRKLRYKALK 1188

Query: 1748 FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMA 1807
            ++L  D LY R  D VLL+C+   +A+  + +VH+G  GTH + H M   L  AGY+W  
Sbjct: 1189 YILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPT 1248

Query: 1808 MEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFI 1867
            M  DC++Y + C  CQ +      P  A+N +  PWPF  WGIDMIG I P +S GH+FI
Sbjct: 1249 MLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFI 1308

Query: 1868 LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCE 1927
            LVA DYFTKWVEA     V      +F++ +II R G+P  I TD G+   ++      +
Sbjct: 1309 LVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFAD 1368

Query: 1928 EFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSS 1986
               I+  NSSPY  Q NG  EA+NK++ +++++ ++ Y + WH  L  AL  YR     S
Sbjct: 1369 SMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGS 1428

Query: 1987 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG 2046
                P+ LVY  +A+LP EV I S R  ++  L+  E+     D+   + + R+ A+A+ 
Sbjct: 1429 IQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKV 1488

Query: 2047 QSYQARMKTAFDKKVHPREFKVGELVLK--RKISQQPDPRGKWTPNYEGPYVVKKAFSGG 2104
               + R+   ++KKV P++F  GEL+ K    I  +    GKW+PN+EGP+ + K  S G
Sbjct: 1489 IKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKG 1548

Query: 2105 ALILTHMDGVELPNPVNADIVKKYF 2129
            A +L  +DG      +N   +KKY+
Sbjct: 1549 AYMLQGLDGEVYDRALNGKYLKKYY 1573


>UniRef100_Q7X6L5 OSJNBb0093G06.3 protein [Oryza sativa]
          Length = 1986

 Score =  700 bits (1807), Expect = 0.0
 Identities = 412/1141 (36%), Positives = 615/1141 (53%), Gaps = 59/1141 (5%)

Query: 1002 PYEITRLLEQEKKAIQPHQEEIELINIGTEEN-KQEIKIGATLEEGVKQKVIQLLREYPD 1060
            P  +  L    K+A+   +E  ++       + ++EI++ AT E  +    I  L+   D
Sbjct: 891  PRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESAL----ITFLQNNKD 946

Query: 1061 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMT 1120
            IFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  
Sbjct: 947  IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006

Query: 1121 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1180
            V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066

Query: 1181 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1240
             +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126

Query: 1241 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1300
             YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ 
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186

Query: 1301 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1360
            +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E 
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246

Query: 1361 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1416
            Q+AF+  K  L +PP+L  P    PL++Y++   + +  VL  +++E G   K +  IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306

Query: 1417 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1476
            +S+   D +TRY  ++K    +    ++L HY   H+  +++   P+  +       G+I
Sbjct: 1307 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365

Query: 1477 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1536
            A+W + L   DI FK + +IK   LAD +A     ++   + D P E+I +         
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411

Query: 1537 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1596
                       W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460

Query: 1597 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1656
             G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520

Query: 1657 PRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPW 1716
             R  N+ AD LA   S  R    +DV    V+ L  P+             + V+    W
Sbjct: 1521 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQDADTHDVVMVEADW 1576

Query: 1717 YYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEA 1773
                 +FL S+E P     QDK    R++ R   +++    LYK++   +L RCV   E 
Sbjct: 1577 REPFIRFLSSQELP-----QDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEG 1631

Query: 1774 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1833
             QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P 
Sbjct: 1632 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1691

Query: 1834 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1893
              L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T      
Sbjct: 1692 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1750

Query: 1894 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 1953
            F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  
Sbjct: 1751 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1809

Query: 1954 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2008
            I      R+  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE 
Sbjct: 1810 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1869

Query: 2009 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 2068
             SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F V
Sbjct: 1870 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLV 1926

Query: 2069 GELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2128
            G+LVL RKI    D R K +P +EGP+++ +    G+  L   DG  + N  N + ++++
Sbjct: 1927 GDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984

Query: 2129 F 2129
            +
Sbjct: 1985 Y 1985


>UniRef100_Q8LMM6 Putative gag-pol [Oryza sativa]
          Length = 1986

 Score =  698 bits (1802), Expect = 0.0
 Identities = 409/1110 (36%), Positives = 605/1110 (53%), Gaps = 62/1110 (5%)

Query: 1034 KQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQK 1093
            ++EI++ AT E  +    I  L+   DIFAW   DMPG+   ++EH +  K +  P++Q+
Sbjct: 924  REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979

Query: 1094 LRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKAS 1153
            LRR   D    IK E+ K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DLNK+ 
Sbjct: 980  LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039

Query: 1154 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMP 1213
            PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++   D  KTSFITP+G +CY  MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099

Query: 1214 FGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLR 1273
            FGL NAGATYQR +   F   I + VE YVDD++VK+  ++  +  L + F  +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159

Query: 1274 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 1333
            LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219

Query: 1334 ISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVF 1393
            +S +     P FKLL+K     W  E Q+AF+  K  L +PP+L  P    PL++Y++  
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279

Query: 1394 DESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1449
             + +  VL  +++E G   K +  IY++S+   D + RY  ++K    +    ++L HY 
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYF 1339

Query: 1450 VNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQP 1509
              H+  +++   P+  +       G+IA+W + L   DI FK + +IK   LAD +A   
Sbjct: 1340 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395

Query: 1510 LDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVS 1569
              ++   + D P E+I +                    W + FDG+    G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433

Query: 1570 PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWET 1629
            P G  + +   I F  ++N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW  
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493

Query: 1630 HHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQR 1689
               N++ YR   R+L   F  +EL H+ R  N+ AD LA   S  R    +DV    V+ 
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-RETAPSDV---FVEH 1549

Query: 1690 LERPS--HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1747
            L  P+  H     D  D     +++   W     +FL S+E P     QDK    R++ R
Sbjct: 1550 LYTPTVPHKDTTQDA-DTRNIAMVE-ADWREPFIRFLTSQELP-----QDKDEAERISRR 1602

Query: 1748 ---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1804
               ++L    LYK++   +L RCV   E  QL+ D+H G  G HA   T+  K  R G++
Sbjct: 1603 SKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1662

Query: 1805 WMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1864
            W     D  +  R C  CQ +A +IH+P   L  +   WPF++WG+DM+G  + KA  G+
Sbjct: 1663 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1721

Query: 1865 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1924
              + VAID F+KW+EA     +T      F   NI+ R+GVP++IITDNGT     V + 
Sbjct: 1722 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1780

Query: 1925 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 1979
             CE+F I+   +S   P  NG VE AN  I      R+  ++      W + LP  L   
Sbjct: 1781 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1840

Query: 1980 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2039
            RTT   +TG +PF LVYG EA+LP EVE  SLR        E  + + R D L+ +EE R
Sbjct: 1841 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1897

Query: 2040 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKK 2099
              A+ +   Y   ++   ++ V  R F VG+LVL RKI    D R K +P +EGP+++ +
Sbjct: 1898 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQTTRD-RHKLSPLWEGPFIISE 1955

Query: 2100 AFSGGALILTHMDGVELPNPVNADIVKKYF 2129
                G+  L   DG  + N  N + +++++
Sbjct: 1956 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985


>UniRef100_Q75KG5 Putative polyprotein [Oryza sativa]
          Length = 1991

 Score =  698 bits (1802), Expect = 0.0
 Identities = 407/1138 (35%), Positives = 614/1138 (53%), Gaps = 53/1138 (4%)

Query: 1002 PYEITRLLEQEKKAIQPHQEEIELINIGTEEN-KQEIKIGATLEEGVKQKVIQLLREYPD 1060
            P  +  L    K+A+   +E  ++       + ++EI++ AT E  +    I  L+   D
Sbjct: 896  PRGVLTLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESAL----ITFLQNNKD 951

Query: 1061 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMT 1120
            IFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  
Sbjct: 952  IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1011

Query: 1121 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1180
            V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+D
Sbjct: 1012 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1071

Query: 1181 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1240
             +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + VE
Sbjct: 1072 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1131

Query: 1241 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1300
             YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ 
Sbjct: 1132 AYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1191

Query: 1301 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1360
            +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E 
Sbjct: 1192 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1251

Query: 1361 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1416
            Q+AF+  K  L +PP+L  P    PL++Y++   + +  VL  +++E G   K +  IY+
Sbjct: 1252 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1311

Query: 1417 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1476
            +S+   D +TRY  ++K    +    ++L HY   H+  +++   P+  +       G+I
Sbjct: 1312 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1370

Query: 1477 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1536
            A+W + L   DI FK + +IK   LAD +A     ++   + D P E+I +         
Sbjct: 1371 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1416

Query: 1537 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1596
                       W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA +
Sbjct: 1417 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465

Query: 1597 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1656
             G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H+
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525

Query: 1657 PRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPW 1716
             R  N+ AD LA   S  R    +DV    V+ L  P+        +    +  +    W
Sbjct: 1526 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVADTHDIAMVEADW 1581

Query: 1717 YYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQL 1776
               + +FL S+E P    K + + + R +  +++    LYK++   +L RCV   E  QL
Sbjct: 1582 REPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1639

Query: 1777 MHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHAL 1836
            + D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P   L
Sbjct: 1640 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1699

Query: 1837 NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 1896
              +   WPF++WG+DM+G  + KA  G+  + +AID F+KW+EA     +T      F  
Sbjct: 1700 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF- 1757

Query: 1897 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 1954
             NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  I  
Sbjct: 1758 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1817

Query: 1955 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2011
                R+  ++      W   LP  L   RTT   +TG +PF LVYG EA+LP EVE  SL
Sbjct: 1818 RIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1877

Query: 2012 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGEL 2071
            R        E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F VG+L
Sbjct: 1878 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1934

Query: 2072 VLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
            VL RKI    D R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 1935 VL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFY 1990


>UniRef100_Q7XXB9 OSJNBa0027O01.4 protein [Oryza sativa]
          Length = 2013

 Score =  696 bits (1797), Expect = 0.0
 Identities = 415/1130 (36%), Positives = 607/1130 (52%), Gaps = 62/1130 (5%)

Query: 1020 QEEIELINIGTEENK-QEIKIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
            +E+I L      E +    KI  + E   K K I L    P       DIFAW   DMPG
Sbjct: 925  REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 984

Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
            +   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  V +P+W+AN V
Sbjct: 985  IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1044

Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
             V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++ 
Sbjct: 1045 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1104

Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
              D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + VE YVDD++VK+ 
Sbjct: 1105 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1164

Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
             ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M
Sbjct: 1165 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1224

Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
              P T+K V+   G +  +SRF+S +     P FKLL+K     W  E Q+AF+  K  L
Sbjct: 1225 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1284

Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
             EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY++S+   D +TR
Sbjct: 1285 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1344

Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
            Y  ++K    +    ++L HY   H+  +++   P+  I     V G+IA+W + L   D
Sbjct: 1345 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLD 1403

Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
            I FK + +IK   LAD +A     ++   + D P E + +                    
Sbjct: 1404 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1438

Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
            W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA + G+  AI + I
Sbjct: 1439 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1498

Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
            K L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H+ R  N+ AD L
Sbjct: 1499 KRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1558

Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
            A   S  R    +DV    V+ L  P+        +    +  +    W   + +FL S+
Sbjct: 1559 ANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQ 1614

Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
            E P     QDK    R++ R   ++L    LYK++   +L RCV   E  QL+ D+H G 
Sbjct: 1615 ELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1669

Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
             G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P   L  +   WP
Sbjct: 1670 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1729

Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
            F++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T      F   NI+ R+G
Sbjct: 1730 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1787

Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
            VP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  I      R+  
Sbjct: 1788 VPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1847

Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
            ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE  SLR       
Sbjct: 1848 RLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1904

Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
             E  + + R D L+ +EE R  A+ R   Y   ++   ++ V  R F VG+LVL RKI  
Sbjct: 1905 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1963

Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
              D R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 1964 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2012


>UniRef100_Q7XPQ7 OSJNBa0053K19.16 protein [Oryza sativa]
          Length = 2010

 Score =  696 bits (1796), Expect = 0.0
 Identities = 410/1130 (36%), Positives = 606/1130 (53%), Gaps = 62/1130 (5%)

Query: 1020 QEEIELINIGTEENKQEI-KIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
            +E+I L      E ++   KI  + E   K K I L    P       DIFAW   DMPG
Sbjct: 922  REDIRLAAATASEGEEPATKISKSGESEAKTKKIPLDPSDPAKTANNKDIFAWKPSDMPG 981

Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
            +   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  V +P+W+AN V
Sbjct: 982  IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1041

Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
             V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++ 
Sbjct: 1042 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLK 1101

Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
              D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + VE YVDD++VK+ 
Sbjct: 1102 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1161

Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
             ++  +  L + F  +R ++++LNP KCTFGV SGKL+GF+VS +GI+ +P+KV AI  M
Sbjct: 1162 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNM 1221

Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
              P T+K V+   G +  +SRF+S +     P FKLL+K     W  E Q+AF+  K  L
Sbjct: 1222 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLL 1281

Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
             EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY++S+   D +TR
Sbjct: 1282 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1341

Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
            Y  ++K    +    ++L HY   H+  +++   P+  I       G+IA+W + L   D
Sbjct: 1342 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1400

Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
            I FK + +IK   LAD +A     ++   + D P E + +                    
Sbjct: 1401 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1435

Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
            W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA + G+  AI + I
Sbjct: 1436 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1495

Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
            K L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H+ R  N+ AD L
Sbjct: 1496 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1555

Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
            A   S   V   +    + V+ L  P+        +    +  +    W   + +FL S+
Sbjct: 1556 ANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVETDWREPLIRFLTSQ 1611

Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
            E P     QDK    R++ R   +++    LYK++   +L RCV   E  QL+ D+H G 
Sbjct: 1612 ELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHSGI 1666

Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
             G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P   L  +   WP
Sbjct: 1667 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1726

Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
            F++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T      F   NI+ R+G
Sbjct: 1727 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1784

Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
            VP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  I      R+  
Sbjct: 1785 VPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1844

Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
            ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE  SLR       
Sbjct: 1845 RLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1901

Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
             E  + + R D L+ +EE R  A+ R   Y   ++   ++ V  R F VG+LVL RKI  
Sbjct: 1902 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1960

Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
              D R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 1961 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2009


>UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]
          Length = 2001

 Score =  696 bits (1795), Expect = 0.0
 Identities = 392/1097 (35%), Positives = 620/1097 (55%), Gaps = 56/1097 (5%)

Query: 1037 IKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1096
            I IG  LE+ ++++++++++E   +FAWS +++ G+D  ++EH +  K    P +QKLRR
Sbjct: 956  ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015

Query: 1097 THPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1156
               D     K E++K + A  +  V +PEW+AN V V K +GK RMC+DF DLNKA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075

Query: 1157 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1216
            +FPLP ID LVD TA  ++ SF+D +SGY+Q+ M  ED EKTSFITP+GT+C+  MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135

Query: 1217 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 1276
             NAGAT+ R +  +    + + VE Y+DD++VKS     H + L + FE LRK  ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195

Query: 1277 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1336
             KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M  P+  ++V+   GR+  +SRF+S 
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255

Query: 1337 MTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1396
                  P FK LR      W  ECQ+AFD +K YL E P L  P +G+PL+MY+A    +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315

Query: 1397 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1456
            +  VL Q++E   ++  +Y++S+     +TRY+ +EK   A+  A+++LRHY ++H   +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373

Query: 1457 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1516
             S   PI  +     V G+IA+W M L  +D+ + ++ AIK  +LAD +A     ++ P 
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427

Query: 1517 EFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIP 1576
            E +         + ++ ++P           W +  DGA NA G G  AV+ +P    + 
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467

Query: 1577 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIP 1636
            ++ +++F  TNN AEYE  +  + +A  +  + L +  DS LV       +E     +  
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527

Query: 1637 YRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIRVQRLERPS 1694
            Y + AR    +F  + +  I R+EN  AD LA  ++  +   N + D+       + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580

Query: 1695 HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1754
            +       I + G+       W   I ++L+S + P    +++ K ++ ++ ++ +    
Sbjct: 1581 YEKKEVACIQREGD-------WREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631

Query: 1755 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1814
            LYK      LL+CV   E  +++ ++H+G  G H    +++ K++R G YW  +  D  +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691

Query: 1815 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1874
            Y + C  CQ +      PP  L  +   WPF  WGID++G + P+A    RF++VAI+YF
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750

Query: 1875 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 1934
            ++W+EA +   +T   V KF+  NIICR+G+P +I+ DNG    +   Q +C+   ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810

Query: 1935 NSSPYRPQMNGAVEAANKNIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 1992
             +S   PQ NG VE AN  I   ++K +  +    W E L   L   RTTV  STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870

Query: 1993 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQAR 2052
             LVYG EA+ P EV   S R+I + K  E      R   L +++E R++A+ +  SY   
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925

Query: 2053 MKTAFDKKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 2112
             K+ +++KV  R  + G+LVLK+ +++     GK    +EGP++VKK    GA  L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983

Query: 2113 GVELPNPVNADIVKKYF 2129
            G EL +  NA  +KK++
Sbjct: 1984 GEELKHTWNAVSLKKFY 2000


>UniRef100_Q8GSW6 Putative gag-pol polyprotein [Oryza sativa]
          Length = 2012

 Score =  693 bits (1789), Expect = 0.0
 Identities = 402/1082 (37%), Positives = 590/1082 (54%), Gaps = 54/1082 (4%)

Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
            DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 972  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031

Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
             V +P+W+AN V V KK G+  MCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091

Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
            D +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151

Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
            E YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211

Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
             +P+KV AI  M +P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271

Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
             Q+AF+  K  L EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331

Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
            ++S+   D +TRY  ++K    +    ++L HY   H+  +++   P+  I       G+
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390

Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437

Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
                        W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485

Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
            + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545

Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
            + R  N+ AD LA   S  R    +DV    V+ L  P+           A +  +    
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQAAGAHDVAMVEAD 1601

Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
            W   + +FL S+E P     QDK    R++ R   ++L    LYK++   +L RCV   E
Sbjct: 1602 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1656

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
              QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P
Sbjct: 1657 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1716

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
               L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T     
Sbjct: 1717 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1775

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1776 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1834

Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
             I      R+  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1835 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVE 1894

Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ V  R F 
Sbjct: 1895 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1951

Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
            VG+LVL RKI    D R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1952 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2009

Query: 2128 YF 2129
            ++
Sbjct: 2010 FY 2011


>UniRef100_Q8W3B5 Putative gag-pol [Oryza sativa]
          Length = 2026

 Score =  692 bits (1787), Expect = 0.0
 Identities = 398/1082 (36%), Positives = 588/1082 (53%), Gaps = 54/1082 (4%)

Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
            DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
             V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
            D +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
            E YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276

Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
             Q+AF+  K  L EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336

Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
            ++S+   D +TRY  ++K    +    ++L HY   H+  +++   P+  I       G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395

Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442

Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
                        W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
            + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
            + R  N+ AD LA   S   V   +    + V+ L  P+        +    +  +    
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVEAD 1606

Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
            W   + +FL S+E P     QDK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
              QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
               L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAP 1780

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
             I      R+  ++      W E LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F 
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
            VG+LVL RKI    D R K +P +EGP+++      G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014

Query: 2128 YF 2129
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q8S7A3 Putative retroelement [Oryza sativa]
          Length = 2017

 Score =  692 bits (1785), Expect = 0.0
 Identities = 398/1082 (36%), Positives = 587/1082 (53%), Gaps = 54/1082 (4%)

Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
            DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
             V +P+W+AN V V KK G+ RMCVD+ DLNK  PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
            D +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
            E YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276

Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
             Q+AF+  K  L EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336

Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
            ++S+   D +TRY  ++K    +    ++L HY   H   +++   P+  I       G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395

Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442

Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
                        W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
            + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
            + R  N+ AD LA   S   V   +    + V+ L  P+        +    +  +    
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSD----VFVEHLYAPTVPHKDTTQVAGTHDVAMVEAD 1606

Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
            W   + +FL S+E P     QDK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
              QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
               L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
             I      R+  ++      W E LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F 
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
            VG+LVL RKI    D R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRR 2014

Query: 2128 YF 2129
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q7X8E7 OSJNBa0042F21.5 protein [Oryza sativa]
          Length = 1950

 Score =  691 bits (1784), Expect = 0.0
 Identities = 399/1082 (36%), Positives = 586/1082 (53%), Gaps = 54/1082 (4%)

Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
            DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 910  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969

Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
             V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 970  EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029

Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
            D +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089

Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
            E YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149

Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209

Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
             Q+AF+  K  L EPPIL  P    PL++Y++   + +  VL  +++E G   K +  IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269

Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
            ++S+   D +TRY  ++K    +    ++L HY   H+  +++   P+  I       G+
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328

Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375

Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
                        W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423

Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
            + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483

Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
            + R  N+ AD LA   S   +   +    + V+ L  P+             +  +    
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDADTHDVALVEAD 1539

Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
            W     +FL S+E P     QDK    R++ R   + +    LYK++   +L RCV   E
Sbjct: 1540 WREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEE 1594

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
              QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P
Sbjct: 1595 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1654

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
               L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T     
Sbjct: 1655 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1713

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1714 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1772

Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
             I      R+  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1773 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1832

Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ V  R F 
Sbjct: 1833 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1889

Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
            VG+LVL RKI    D R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1890 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 1947

Query: 2128 YF 2129
            ++
Sbjct: 1948 FY 1949


>UniRef100_Q8LMM4 Putative gag-pol [Oryza sativa]
          Length = 2017

 Score =  691 bits (1782), Expect = 0.0
 Identities = 412/1132 (36%), Positives = 606/1132 (53%), Gaps = 66/1132 (5%)

Query: 1020 QEEIELINIGTEENK-QEIKIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
            +E+I L      E +    KI  + E   K K I L    P       DIFAW   DMPG
Sbjct: 929  REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 988

Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
            +   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  V +P+W+AN V
Sbjct: 989  IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1048

Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
             V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++ 
Sbjct: 1049 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1108

Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
              D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + VE YVDD++VK+ 
Sbjct: 1109 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1168

Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
             ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M
Sbjct: 1169 QKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1228

Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
              P T+K V+   G +  +SRF+S +     P FKLL+K     W  E Q+AF+  K  L
Sbjct: 1229 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1288

Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG---KKEHAIYYLSKKFTDCETR 1427
             EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY++S+   D +TR
Sbjct: 1289 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1348

Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
            Y  ++K    +    ++L HY   H+  +++   P+  I       G+IA+W + L   D
Sbjct: 1349 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1407

Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
            + FK + +IK   LAD +A                      +  +C+E    +  +    
Sbjct: 1408 LSFKPRISIKSQALADFVA----------------------EWTECQEDTTVKKME---H 1442

Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
            W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA + G+  AI + I
Sbjct: 1443 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1502

Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
            K L + GDS LV+NQ+  EW     N+  YR   R+L   F  +EL H+ R +N+ AD L
Sbjct: 1503 KRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAADRL 1562

Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAG--ENVIDYRPWYYDIKQFLL 1725
            A   S   V   +    + V+ L  P+      D    AG  +  +    W   + +FL 
Sbjct: 1563 ANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQAAGIHDVAMVETDWREPLIRFLT 1616

Query: 1726 SREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 1782
            S+E P     QDK    R++ R   +++    LYK++   +L RCV   E  QL+ D+H 
Sbjct: 1617 SQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHS 1671

Query: 1783 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1842
            G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P   L  +   
Sbjct: 1672 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1731

Query: 1843 WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICR 1902
            WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T      F   NI+ R
Sbjct: 1732 WPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789

Query: 1903 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRI 1957
            +GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  I      R+
Sbjct: 1790 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849

Query: 1958 VQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEA 2017
              ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE  SLR     
Sbjct: 1850 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---R 1906

Query: 2018 KLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKI 2077
               E  + + R D L+ +EE R  A+ R   Y   ++   ++ V  R F VG+LVL RKI
Sbjct: 1907 NFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKI 1965

Query: 2078 SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
                D R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 1966 QTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFY 2016


>UniRef100_Q75IS9 Putative polyprotein [Oryza sativa]
          Length = 1756

 Score =  691 bits (1782), Expect = 0.0
 Identities = 408/1130 (36%), Positives = 603/1130 (53%), Gaps = 62/1130 (5%)

Query: 1020 QEEIEL-INIGTEENKQEIKIGATLEEGVKQKVIQL-------LREYPDIFAWSYEDMPG 1071
            +E+I L +   +E      KI  + E   K K I L            DIFAW   DMPG
Sbjct: 668  REDIRLAVATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFAWKPSDMPG 727

Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
            +   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  V +P+W+AN V
Sbjct: 728  IPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 787

Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
             V KK G+ RMCVD+ DLNK  PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++ 
Sbjct: 788  LVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 847

Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
              D  KTSFITP G +CY  MPFGL NAGATYQR +   F   I + VE YVDD+++K+ 
Sbjct: 848  ESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTK 907

Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
             ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M
Sbjct: 908  QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 967

Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
              P T+K V+   G +  +SRF+S +     P FKLL+K     W  E Q+AF+  K +L
Sbjct: 968  KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFL 1027

Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
             EPP+L  P    PL++Y++   + +  VL  +++E G   K +  IY++S+   D +TR
Sbjct: 1028 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1087

Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
            Y  ++K    +    ++L HY   H+  +++   P+  I       G+IA+W + L   D
Sbjct: 1088 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1146

Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
            I FK + +IK   LAD +A     ++   + D P E++ +                    
Sbjct: 1147 ISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------------------- 1181

Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
            W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA + G+  AI + I
Sbjct: 1182 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1241

Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
            K L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H+ R  N+ AD L
Sbjct: 1242 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1301

Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
            A   S   V   +    + V+ L  P+        I    +  +    W     +FL S+
Sbjct: 1302 ANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREPFIRFLTSQ 1357

Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
            E P     QDK    R++ R   +++    LYK++   +L RCV   E  QL+ D+H G 
Sbjct: 1358 ELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1412

Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
             G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P   L  +   WP
Sbjct: 1413 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1472

Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
            F++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T      F   NI+ R+G
Sbjct: 1473 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1530

Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
            VP++IITDNG      V +  CE+F I+   +S   P  NG VE AN  I      R+  
Sbjct: 1531 VPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1590

Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
            ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE  SLR       
Sbjct: 1591 RLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1647

Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
             E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F VG+LVL RKI  
Sbjct: 1648 REERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1706

Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
              D R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 1707 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1755


>UniRef100_Q7XWE4 OSJNBa0035O13.3 protein [Oryza sativa]
          Length = 2008

 Score =  684 bits (1766), Expect = 0.0
 Identities = 399/1091 (36%), Positives = 588/1091 (53%), Gaps = 68/1091 (6%)

Query: 1051 VIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQ 1110
            +I  L+   DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ 
Sbjct: 973  LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032

Query: 1111 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1170
            K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092

Query: 1171 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1230
            A  ++ SF+D +SGY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152

Query: 1231 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1290
            F   I + VE YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212

Query: 1291 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1350
            F+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272

Query: 1351 NQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG- 1408
                 W  E Q+AF+  K  L EPP+L  P    PL++Y++   + +  VL  +++E G 
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332

Query: 1409 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1466
              K +  IY++S+   D +TRY  ++K               L  H+  +++   P+  I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377

Query: 1467 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1526
                   G+IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + 
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432

Query: 1527 YLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECT 1586
            +                    W + FDG+    G G G V++SP G  + +   I F  +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472

Query: 1587 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLT 1646
            +N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L  
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532

Query: 1647 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQA 1706
             F  +EL H+ R  N+ AD LA   S   V   +    + V+ L  P+        +   
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588

Query: 1707 GENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMV 1763
             +  +    W   + +FL S+E P     QDK    R++ R   +++    LYK++   +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643

Query: 1764 LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQ 1823
            L RCV   E  QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703

Query: 1824 IYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1883
             +A +IH+P   L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA   
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762

Query: 1884 TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQM 1943
              +T      F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821

Query: 1944 NGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 1998
            NG VE AN  I      R+  ++      W + LP  L   RTT   +TG +PF LVYG 
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881

Query: 1999 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFD 2058
            EA+LP EVE  SLR        E  + + R D L+ +EE R  A+ R   Y   ++   +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938

Query: 2059 KKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 2118
            + V  R F VG+LVL RKI    D R K +P +EGP+++ +    G+  L   DG  + N
Sbjct: 1939 RNVRSRAFLVGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996

Query: 2119 PVNADIVKKYF 2129
              N + +++++
Sbjct: 1997 SWNIEHLRRFY 2007


>UniRef100_Q93Y89 Gag-pol [Oryza sativa]
          Length = 2017

 Score =  682 bits (1761), Expect = 0.0
 Identities = 394/1082 (36%), Positives = 586/1082 (53%), Gaps = 54/1082 (4%)

Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
            DIFAW   DMPG+   ++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
             V +P+W+AN V V KK G+ RMCVD+ DLN + PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
            D + GY+QI++   D  KTSFITP+G +CY  MPFGL NAGATYQR +   F   I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
            E YVDD++VK+  ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
             +P+K+ AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276

Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
             Q+AF+  K  L EPP+L  P    PL++Y+A   + +  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336

Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
            ++S+   D +TRY  ++K    +    ++L HY  +H+  +++    +  I       G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGR 1395

Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442

Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
                        W + FDG+    G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
            + G+  AI + IK L + GDS LV+NQ+  EW     N++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
            + R  N+ AD LA   S   V   +    + V+ L  P+        I    +  +    
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1606

Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
            W   + +FL S+E P     QDK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
              QL+ D+H G  G HA   T+  K  R G++W     D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
               L  +   WPF++WG+DM+G  + KA  G+  + VAID F+KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780

Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
             I      R+  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ V  R F 
Sbjct: 1900 FESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
            VG+LVL RKI    D R K +P +EGP+++      G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014

Query: 2128 YF 2129
            ++
Sbjct: 2015 FY 2016


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.340    0.149    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,286,396,260
Number of Sequences: 2790947
Number of extensions: 135001211
Number of successful extensions: 502117
Number of sequences better than 10.0: 29582
Number of HSP's better than 10.0 without gapping: 4607
Number of HSP's successfully gapped in prelim test: 24975
Number of HSP's that attempted gapping in prelim test: 479682
Number of HSP's gapped (non-prelim): 37546
length of query: 2129
length of database: 848,049,833
effective HSP length: 143
effective length of query: 1986
effective length of database: 448,944,412
effective search space: 891603602232
effective search space used: 891603602232
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 83 (36.6 bits)