BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.9 - phase: 0 /pseudo
(145 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo... 96 2e-19
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense] 94 8e-19
UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa] 92 2e-18
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa] 92 2e-18
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa] 92 3e-18
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa] 91 5e-18
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa] 91 5e-18
UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop... 90 9e-18
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana] 88 3e-17
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop... 87 8e-17
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop... 87 1e-16
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops... 87 1e-16
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana] 84 5e-16
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa] 84 5e-16
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza... 83 1e-15
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa] 81 6e-15
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa... 80 1e-14
UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis ... 78 4e-14
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or... 78 4e-14
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas] 77 8e-14
>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
Length = 1328
Score = 95.9 bits (237), Expect = 2e-19
Identities = 51/141 (36%), Positives = 81/141 (57%)
Query: 3 GSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSV 62
G K+++ KF GDN F + +M +LIQQ K L P TM + ++ ++A S
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 63 IVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELL 122
I L L D V+ + E TA +W +LE+LYM+K+LT++ +LK+ LY+ M + + L
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 123 VEFNKIIGDLENIEVRLEDVD 143
FN +I L N+ V++E+ D
Sbjct: 123 NVFNGLITQLANLGVKIEEED 143
>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 93.6 bits (231), Expect = 8e-19
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 3 GSKWDIEKFTGDND-FGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARS 61
G K+++ KF GD F + + +M+ +LIQQ KAL GK P +M + E+ +KA S
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 62 VIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMEL 121
I L L D V+ + E +A +W KLE LYM+K+LT++ +LK+ LY+ M + +
Sbjct: 63 AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122
Query: 122 LVEFNKIIGDLENIEVRLEDVD 143
L N +I L N+ V++E+ D
Sbjct: 123 LNVLNGLITQLANLGVKIEEED 144
>UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]
Length = 432
Score = 92.4 bits (228), Expect = 2e-18
Identities = 50/139 (35%), Positives = 86/139 (60%), Gaps = 2/139 (1%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIV 64
K+D+ KF G +FGL + +++ +L QQ+ KALKG P M + EM +A + I
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVK--PAKMEDDDCEEMQLQAAATIR 100
Query: 65 LCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVE 124
CL D+++ V +E++ +W KLEA +M+K+LT++++LKQ LY KM + + +
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNV 160
Query: 125 FNKIIGDLENIEVRLEDVD 143
FN+++ DL ++V ++D D
Sbjct: 161 FNQLVTDLVKMDVEVDDED 179
>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
Length = 1280
Score = 92.0 bits (227), Expect = 2e-18
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIV 64
K+D+ D F L +VKM A+L QQ + AL G S EK + KA S I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKD-RKAMSYIH 98
Query: 65 LCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVE 124
L L + +L++V KE TAA +W KLE + MTK LT + LKQ L+ K+ ++M+ L
Sbjct: 99 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158
Query: 125 FNKIIGDLENIEVRLEDVD 143
F +I+ DLE+IEV+ ++ D
Sbjct: 159 FKEIVADLESIEVKYDEED 177
>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
Length = 1181
Score = 91.7 bits (226), Expect = 3e-18
Identities = 55/139 (39%), Positives = 81/139 (57%), Gaps = 1/139 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIV 64
K+D+ D F L +VKM A+L QQ+ + AL G S EK + KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63
Query: 65 LCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVE 124
L L + +L++V KE TAA +W KLE + MTK LT + LKQ L+ K+ ++M+ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 125 FNKIIGDLENIEVRLEDVD 143
F +I+ DLE++EV+ ++ D
Sbjct: 124 FKEIVADLESMEVKYDEKD 142
>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
Length = 1211
Score = 90.9 bits (224), Expect = 5e-18
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIV 64
K+D+ D F L +VKM A+L QQ + AL G S EK + K S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63
Query: 65 LCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVE 124
L L + +L++V KE TAA +W KLE + MTK LT + LKQ L+ K+ ++M+ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 125 FNKIIGDLENIEVRLEDVD 143
F KI+ DLE++EV+ ++ D
Sbjct: 124 FKKIVADLESMEVKYDEED 142
>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
Length = 1243
Score = 90.9 bits (224), Expect = 5e-18
Identities = 55/139 (39%), Positives = 81/139 (57%), Gaps = 1/139 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIV 64
K+D+ D F L +VKM A+L QQ + AL G S EK + KA S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63
Query: 65 LCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVE 124
L L + +L++V KE TAA +W KLE + MTK LT + LKQ L+ K+ +++M+ L
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123
Query: 125 FNKIIGDLENIEVRLEDVD 143
F +I+ DLE++EV+ ++ D
Sbjct: 124 FKEIVADLESMEVKYDEDD 142
>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 90.1 bits (222), Expect = 9e-18
Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 12/149 (8%)
Query: 7 DIEKFTGDNDFGLLKVKMEA------MLIQQKCEKALKGKGSLPVTMSRAEKTE------ 54
++EK G+ D+ L K K+ A +L + ++A++ + S T S KTE
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 55 MVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVK 114
KARS ++L LG+ VLRKV KE TAA M L+ L+M KSL ++ +LKQ LY +KM
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SKAIMELLVEFNKIIGDLENIEVRLEDVD 143
S I E + +F K+I DLEN++V + D D
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDED 155
>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 88.2 bits (217), Expect = 3e-17
Identities = 58/157 (36%), Positives = 89/157 (55%), Gaps = 17/157 (10%)
Query: 3 GSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSR------------A 50
G++ ++EKF G D+ + K K+ A + L+ + P+ R
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLR-ESETPMGKERDSEKSDEDEKEER 61
Query: 51 EKTEMVD----KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ* 106
EK E + KARS IVL + D+VLRK+ KE++AA+M L+ LYM+K+L ++ +LKQ
Sbjct: 62 EKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQK 121
Query: 107 LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
LYSFKM ++ +I + EF I+ DLEN+ V + D D
Sbjct: 122 LYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDED 158
>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 87.0 bits (214), Expect = 8e-17
Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 15/152 (9%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDK-------- 58
++EKF G D+ + K K+ A L ALK + L ++ + TE +K
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 59 -------ARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFK 111
ARS IVL + D+VLRK+ KE +AA+M L+ LYM+K+L ++ + KQ LYSFK
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
M ++ +I + EF +II DLEN V + D D
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDED 158
>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 86.7 bits (213), Expect = 1e-16
Identities = 60/152 (39%), Positives = 87/152 (56%), Gaps = 15/152 (9%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMS-----------RAEKTEM 55
++EKF G D+ + K K+ A + ALK S S + EK E
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 56 VD----KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFK 111
++ KARS IVL + D+VLRK+ KESTAA+M L+ LYM+K+L ++ + KQ LYSFK
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
M ++ ++ + EF +II DLEN+ V + D D
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDED 158
>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 86.7 bits (213), Expect = 1e-16
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 26/160 (16%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVD--------- 57
++EKF GD D+ L K E +L + L+G G + TE+ D
Sbjct: 7 EVEKFDGDGDYILWK---EKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETA 63
Query: 58 --------------KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFL 103
KARS I+L LG+ VLRKV K+ TAA M L+ L+M KSL ++ +L
Sbjct: 64 TSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYL 123
Query: 104 KQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
KQ LY +KM ++ + E + +F K+I DLEN++V + D D
Sbjct: 124 KQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDED 163
>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 84.3 bits (207), Expect = 5e-16
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 7 DIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEK-------------T 53
++EKF G D+ L K K+ A + AL+ S+ + E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 EMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMV 113
E KARS IVL + D+VLRK KE TA SM L+ LYM+K+L ++ +LKQ LYS+KM
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 KSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
++ ++ + EF ++I DLEN V + D D
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDED 156
>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
Length = 382
Score = 84.3 bits (207), Expect = 5e-16
Identities = 47/143 (32%), Positives = 86/143 (59%), Gaps = 2/143 (1%)
Query: 1 TMGSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKAR 60
T SK+++ KF G +F L +++++ +L QQ KAL+ ++P + + EM +A
Sbjct: 4 TAVSKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQE--TMPEKIDADKWNEMKAQAA 61
Query: 61 SVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIME 120
+ I L L D V+ +V E + +W KL +L+M+KSLT + +LKQ LY ++ + + +
Sbjct: 62 ATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRK 121
Query: 121 LLVEFNKIIGDLENIEVRLEDVD 143
+ FN+++ DL ++V+L+D D
Sbjct: 122 HVDVFNQLVVDLSKLDVKLDDED 144
>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 83.2 bits (204), Expect = 1e-15
Identities = 51/140 (36%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQK-CEKALKGKGSLPVTMSRAEKTEMVDKARSVI 63
K+D+ F L +VKM A+L Q ++AL+ G T AE+ KA S+I
Sbjct: 2 KYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 61
Query: 64 VLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLV 123
L L + +L+KV +E TAA +W KLE++ M+K LT + +K L+S K+ +S +++ +
Sbjct: 62 QLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 121
Query: 124 EFNKIIGDLENIEVRLEDVD 143
F +II DL ++EV+ +D D
Sbjct: 122 VFKEIIADLVSMEVQFDDED 141
>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
Length = 1322
Score = 80.9 bits (198), Expect = 6e-15
Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQK-CEKALKGKGSLPVTMSRAEKTEMVDKARSVI 63
K+D+ F L +VKM A+L Q ++AL+ G T AE+ KA S+I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 64 VLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLV 123
L L + +L++V ++ TAA +W KLE++ M+K LT + +K L+S K+ +S +++ +
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124
Query: 124 EFNKIIGDLENIEVRLEDVD 143
F +I+ DL ++EV+ +D D
Sbjct: 125 VFKEIVADLVSMEVQFDDED 144
>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
Length = 1326
Score = 79.7 bits (195), Expect = 1e-14
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 5 KWDIEKFTGDNDFGLLKVKMEAMLIQQK-CEKALKGKGSLPVTMSRAEKTEMVDKARSVI 63
K+D+ F L +VKM A+L Q ++AL+ G T AE+ KA +I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64
Query: 64 VLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLV 123
L L + +L++V +E TAA +W KLE++ M+K LT + +K L+S K+ +S +++ +
Sbjct: 65 QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124
Query: 124 EFNKIIGDLENIEVRLEDVD 143
F +I+ DL +IEV+ +D D
Sbjct: 125 VFKEIVVDLVSIEVQFDDED 144
>UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1338
Score = 78.2 bits (191), Expect = 4e-14
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 20/155 (12%)
Query: 9 EKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGS---------LPVTMSRAEKT------ 53
E+F G D+ L K K+ A L ALK K + V S +E+
Sbjct: 18 ERFDGRGDYTLWKRKLLAQLEVMGISDALKEKEEKKEAVETERVKVVSSSSERRREEHKK 77
Query: 54 -----EMVDKARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LY 108
E +KARSVI+L + D +LR++ E TAA M L+ LY++ L+ + LK+ L+
Sbjct: 78 DHSREEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLF 137
Query: 109 SFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
FKM ++KA+ E + +F +I+ DLE ++V + D D
Sbjct: 138 EFKMSENKAVEENIEDFFRIVEDLEKLDVYVSDED 172
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
Length = 556
Score = 78.2 bits (191), Expect = 4e-14
Identities = 44/126 (34%), Positives = 76/126 (59%), Gaps = 2/126 (1%)
Query: 18 GLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKARSVIVLCLGDKVLRKVAK 77
G +++++ +L QQ KAL+ ++P M + EM +A ++I L L D V+ +V
Sbjct: 152 GSSQMRLKDLLAQQGISKALEE--TMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMD 209
Query: 78 ESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEV 137
E T +W KL +LYM+KSLT + +LKQ LY +M + + + + FN+++ DL ++V
Sbjct: 210 EKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDV 269
Query: 138 RLEDVD 143
+L+D D
Sbjct: 270 KLDDED 275
>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 77.0 bits (188), Expect = 8e-14
Identities = 47/140 (33%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 2 MGSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEK-TEMVDKAR 60
M +K++IEKF G N F L K+K++A+L + C A+ + PV + +K +EM + A
Sbjct: 1 MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAISER---PVDFTDDKKWSEMNEDAM 56
Query: 61 SVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LYSFKMVKSKAIME 120
+ + L + D VL + ++ TA +W L LY KSL ++ FLK+ LY+ +M +S ++ E
Sbjct: 57 ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116
Query: 121 LLVEFNKIIGDLENIEVRLE 140
L N + L ++ ++E
Sbjct: 117 HLNTLNTLFSQLTSLSCKIE 136
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,238,439
Number of Sequences: 2790947
Number of extensions: 6299258
Number of successful extensions: 16237
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 16060
Number of HSP's gapped (non-prelim): 231
length of query: 145
length of database: 848,049,833
effective HSP length: 121
effective length of query: 24
effective length of database: 510,345,246
effective search space: 12248285904
effective search space used: 12248285904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC139600.9