BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138580.5 + phase: 0 /pseudo
(448 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 127 5e-28
UniRef100_Q8LMT3 Putative retroelement [Oryza sativa] 107 7e-22
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 103 8e-21
UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcrip... 103 1e-20
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 99 2e-19
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 97 7e-19
UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum] 97 9e-19
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 96 3e-18
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana] 95 4e-18
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana] 95 4e-18
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 94 8e-18
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 94 8e-18
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 94 8e-18
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 94 8e-18
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 94 8e-18
UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like... 94 8e-18
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 94 1e-17
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 93 1e-17
UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa] 92 2e-17
UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa] 92 3e-17
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 127 bits (320), Expect = 5e-28
Identities = 76/227 (33%), Positives = 121/227 (52%), Gaps = 22/227 (9%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILL S L+++P+Y +SF++ P G+ I +F W E + RK + W + ++
Sbjct: 597 ILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQ 656
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLGV L N A+LGKW WR L + E W++++ A+Y +D L L+ G S
Sbjct: 657 GGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKY-CSDKPLSGLRLKAGS---SH 711
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ ++ ++D +F C + VG+G K FW D W G PL +F LY + +
Sbjct: 712 FWQGVMEVKD-------DFFSFCT-KIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVIT 763
Query: 372 KSITVRNMFLLGV-------DVGGEALR-WRRRLWAWEE-ELVEECR 409
K IT+ ++ G+ D+ G+ LR WR+ + +WE LVE C+
Sbjct: 764 KRITIADLNRKGIDCMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCK 810
>UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]
Length = 764
Score = 107 bits (267), Expect = 7e-22
Identities = 61/192 (31%), Positives = 98/192 (50%), Gaps = 12/192 (6%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
IL+ S L+++P+Y + + P G+ + + S+ +FFW E KRK I+W+ L KE+
Sbjct: 328 ILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEF 387
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG R+ N+ALL KW +RL +E +L +Y + DGG G + S
Sbjct: 388 GGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKY-MKDGG---GFFQSKAEESSQ 443
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ + ++ W +VG+G +FW D W G+ PL ++ +Y + +
Sbjct: 444 FWKGLHEVKK--------WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCAD 495
Query: 372 KSITVRNMFLLG 383
K TV M L G
Sbjct: 496 KEKTVSQMCLEG 507
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 103 bits (258), Expect = 8e-21
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W +KS+ I+LK+V A+PV+A+S FK P +++ S + F+W + +RKI
Sbjct: 627 WFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHW 686
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W+ L L KE+GGLG + FN ALL K WRLL + L+ +++ +RY L+
Sbjct: 687 LSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLD- 745
Query: 300 GDLEDGGRSCSSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D G S WR I+ RD +C G + +RVG+G I W D W D
Sbjct: 746 ---SDVGSRPSFGWRSILHGRDLLCRG--------LVKRVGNGKSIRVWIDYWLDD 790
>UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1614
Score = 103 bits (257), Expect = 1e-20
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+ + + L+++P YA+ F++ P G+ S+ +++W K K ++W+ L+ K+Y
Sbjct: 1416 VQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYHMVKWEDLAFPKDY 1475
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG T R N ALL KW ++ + ++L ++L +Y + DGG + R S
Sbjct: 1476 GGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKY-LQDGGF----FQCKERYASQ 1530
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ ++ IR + G W +VGDG+ I FWRD W G PL F ++ +
Sbjct: 1531 FWKGLLNIRRWLSLGSV-W-------QVGDGSHISFWRDVWWGQCPLRTLFPAIFAVCNQ 1582
Query: 372 KSITV 376
+ I V
Sbjct: 1583 QDILV 1587
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 99.4 bits (246), Expect = 2e-19
Identities = 52/168 (30%), Positives = 82/168 (47%), Gaps = 9/168 (5%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + + + F WG +RK I W + + G
Sbjct: 317 LTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEG 376
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ + ++ N ALL K WRL+ D +LW +++ Y V D + DG CSS
Sbjct: 377 GLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQD--VRDGAWTKVRSVCSST 434
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
WR + + G W +GDG +I FW D+W ++PL +
Sbjct: 435 WRSVALGMREVVIPGLSWV-------IGDGREILFWMDKWLTNIPLAE 475
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 97.4 bits (241), Expect = 7e-19
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 18/178 (10%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W AK++ +LLKS+ ALPVY +S FK P + + +++ F+W + KRKI
Sbjct: 757 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHW 816
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W L+L K+ GG G L+ FN ALL K WR+L ++ +L+ +V +RY +
Sbjct: 817 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY------FSN 870
Query: 300 GDLEDGGRSC--SSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D R S WR I+ R+ + +G +R +G+G K W D+W D
Sbjct: 871 SDFLSATRGSRPSYAWRSILFGRELLMQG--------LRTVIGNGQKTFVWTDKWLHD 920
>UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum]
Length = 327
Score = 97.1 bits (240), Expect = 9e-19
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 15/229 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L+ SVL ++P Y +S P+ + + + F W KI ++W ++L K+YG
Sbjct: 77 LINSVLDSIPTYFMSLLLMPAKVKQRLDKIRRDFLWEGNNKDHKIHLVKWAKVTLPKQYG 136
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ L N LL KW WR + LW++V+ A+YG + G +
Sbjct: 137 GLGIKDLALHNKCLLLKWHWRYNQEAAGLWKEVIQAKYGSDSHWCSNKVSTSYG---TGV 193
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVNK 372
WR+I ++ E +FG VG+G I FW+D W GD PL + F ++ +A +
Sbjct: 194 WRDIRKL-------WEIFFGD-ASLMVGNGEHIQFWKDIWLGDTPLMNVFPSIFLIASHP 245
Query: 373 SITVRNMFLLGVDVGGEALRWRRRLWAWEEELVEECRVVLLTVSLKSDK 421
T+ V L RR L WE E V + T ++ S +
Sbjct: 246 DSTISQYREDNV----WNLILRRNLNDWELEEVFSLMATIQTSAINSQR 290
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 95.5 bits (236), Expect = 3e-18
Identities = 57/169 (33%), Positives = 88/169 (51%), Gaps = 11/169 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + ++ F WG +K+K + W + K G
Sbjct: 655 LTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEG 714
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGD-LEDGGRSCSS 311
G+G+ R+ N AL+ K WRLL D+E+LW +V+ +Y V GG++D L+ R S+
Sbjct: 715 GIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV--GGVQDTSWLKPQPRWSST 772
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
W V +R+ + + G GW GDG I FW DRW PL +
Sbjct: 773 WRSVAVGLREVVVK-GVGWV-------PGDGCTIRFWLDRWLLQEPLVE 813
>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 95.1 bits (235), Expect = 4e-18
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLKSV A+PV+A+S FK P +++S + F+W + RKI W+ L L K+
Sbjct: 754 VLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDS 813
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG ++ FN ALL K WRLL + L ++L +RY A L D L + S
Sbjct: 814 GGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL-DAAL---SQRPSF 869
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + +G +++RVGDGA + W D W D
Sbjct: 870 GWRSILFGRELLSKG--------LQKRVGDGASLFVWIDPWIDD 905
>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 95.1 bits (235), Expect = 4e-18
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLKSV A+PV+A+S FK P +++S + F+W + RKI W+ L L K+
Sbjct: 757 VLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDS 816
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG ++ FN ALL K WRLL + L ++L +RY A L D L + S
Sbjct: 817 GGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL-DAAL---SQRPSF 872
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + +G +++RVGDGA + W D W D
Sbjct: 873 GWRSILFGRELLSKG--------LQKRVGDGASLFVWIDPWIDD 908
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 94.0 bits (232), Expect = 8e-18
Identities = 48/99 (48%), Positives = 64/99 (64%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLKSV A+PVYA+S FK P GI+S I+SLL F+W + +KR I + W L K+
Sbjct: 412 ILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKE 471
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARY 290
GGLG L +FN ALL K WR++ +L+ +V+ ARY
Sbjct: 472 GGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARY 510
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 94.0 bits (232), Expect = 8e-18
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+++KSV LP Y +S F+ P I S + S + KF+W D R + + WD L K
Sbjct: 575 VMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSD 634
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG + +FN ALL K WRL+ ++L+ KV RY L+ S S
Sbjct: 635 GGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLD----SIKSYSPSY 690
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR ++ R + +G + +RVG GA I W D W
Sbjct: 691 GWRSMISARSLVYKG--------LIKRVGSGASISVWNDPW 723
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 94.0 bits (232), Expect = 8e-18
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 1173 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1232
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1233 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1288
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1289 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1336
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1337 KEMTINNLF 1345
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 94.0 bits (232), Expect = 8e-18
Identities = 55/162 (33%), Positives = 85/162 (51%), Gaps = 12/162 (7%)
Query: 191 RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKE 250
+++LK+VL ++P+Y++S FK PS + I+SLL +F+W D RK S + W L+ K
Sbjct: 685 QVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKN 744
Query: 251 YGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCS 310
GGLG + N +LL K WRLL E+L ++L+ +Y + +E S
Sbjct: 745 AGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC----KLPSQPS 800
Query: 311 SWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR I+ R+ I + G GW + +G K+ W D W
Sbjct: 801 HGWRSIIAGRE-ILKEGLGWL-------ITNGEKVSIWNDPW 834
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 94.0 bits (232), Expect = 8e-18
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 947 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1006
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1007 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1062
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1063 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1110
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1111 KEMTINNLF 1119
>UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1197
Score = 94.0 bits (232), Expect = 8e-18
Identities = 59/193 (30%), Positives = 97/193 (49%), Gaps = 21/193 (10%)
Query: 191 RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKE 250
+++L+SVLTA+PVYA+S F P + I+S L +F+W + + +RK+ + WD L++ K
Sbjct: 620 QVMLQSVLTAIPVYAMSCFLLPLSLCDRIQSTLTRFWWDKTDQQRKMCWVGWDRLAVPKV 679
Query: 251 YGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCS 310
GGLG + +NVALL K WR+L L +VL+ +Y + L+ S
Sbjct: 680 RGGLGFKNFKAYNVALLAKQSWRVLPHPSCLLARVLLGKYCQNESFLK----ALSPTFAS 735
Query: 311 SWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW---------CGDVPLCDR 361
WR+++ RD + GW +G+ + W+D W G PL +
Sbjct: 736 HGWRDLLAGRD-LLRKQLGW-------TIGNDKSVLVWQDAWLAHDKRIQPVGPAPLLSK 787
Query: 362 FSRLYDLAVNKSI 374
++ DL + S+
Sbjct: 788 DWKVKDLFLPNSV 800
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 93.6 bits (231), Expect = 1e-17
Identities = 57/166 (34%), Positives = 83/166 (49%), Gaps = 12/166 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLK+V ALP Y +S FK P I I+S++ +F+W ++ R + W LS K
Sbjct: 791 ILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAV 850
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG + FN+ALLGK WR++ ++++L KV +RY L G S
Sbjct: 851 GGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLN----APLGSRPSF 906
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVP 357
W+ I + I +G +R +G+G I+ W D W G P
Sbjct: 907 AWKSIYEAQVLIKQG--------IRAVIGNGETINVWTDPWIGAKP 944
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 93.2 bits (230), Expect = 1e-17
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+L+K+V+ A+PVY + FK P +I + L F+W +RK WD+L+ K
Sbjct: 1525 VLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSL 1584
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG R FN ALL + WRL+ ++L +VL A+Y G L D G + S
Sbjct: 1585 GGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKY-FPHGSLIDTSF---GSNSSP 1640
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR I D + +G + RVG+G I WRD W
Sbjct: 1641 AWRSIEYGLDLLKKG--------IIWRVGNGNSIRIWRDSW 1673
>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
Length = 1557
Score = 92.4 bits (228), Expect = 2e-17
Identities = 52/161 (32%), Positives = 84/161 (51%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+L+K+V+ A+PVY + FK P + + SL F+WG + KRK W +L+ K
Sbjct: 1160 VLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSL 1219
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG +R FN ALL + WRL+ + ++L +VL A+Y +G + D G + S
Sbjct: 1220 GGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKY-YPNGSIVDTSF---GGNASP 1275
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
W+ I + + +G + R+G+G + W+D W
Sbjct: 1276 GWQAIEHGLELVKKG--------IIWRIGNGRSVRVWQDPW 1308
>UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa]
Length = 593
Score = 92.0 bits (227), Expect = 3e-17
Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+L+ SVL++L +Y LSFF+ P GII + ++FFW E K+K RW L KE
Sbjct: 241 VLINSVLSSLAMYMLSFFEVPKGIIKKLDYYRSRFFWQSDEHKKKYRLARWSVLCKPKEC 300
Query: 252 GGLGVTRLREFNVAL---LGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRS 308
GGLG+ L N L L K W+ LL RK +A+ + + GD
Sbjct: 301 GGLGIQNLEVQNKCLLRGLAKLVWQNLL------RKKYLAKKTIMQVQKQRGD------- 347
Query: 309 CSSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDL 368
S +W ++ ++D G ++ DG +I FW D W G+ L + LY+L
Sbjct: 348 -SHFWTGLMGVKDTFSSFGS--------FKLQDGLQIRFWEDCWLGNQSLEKIYPSLYNL 398
Query: 369 AVNKSITV 376
NK++ V
Sbjct: 399 VRNKNVVV 406
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.353 0.160 0.608
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,569,270
Number of Sequences: 2790947
Number of extensions: 26857969
Number of successful extensions: 109652
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 109288
Number of HSP's gapped (non-prelim): 271
length of query: 448
length of database: 848,049,833
effective HSP length: 131
effective length of query: 317
effective length of database: 482,435,776
effective search space: 152932140992
effective search space used: 152932140992
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 76 (33.9 bits)
Medicago: description of AC138580.5