BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138453.6 - phase: 0 /pseudo
(667 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q851Y3 Putative polyprotein [Oryza sativa] 46 0.003
UniRef100_Q6L3Y5 Putative gag-pol polyprotein [Solanum demissum] 46 0.004
UniRef100_Q84R78 Putative gag-pol polyprotein [Oryza sativa] 45 0.009
UniRef100_Q84SW8 Gag-pol polyprotein [Oryza sativa] 45 0.009
UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana] 44 0.012
UniRef100_Q9LPK1 F6N18.1 [Arabidopsis thaliana] 44 0.012
UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [... 44 0.012
UniRef100_Q7XML8 OSJNBa0040D17.9 protein [Oryza sativa] 44 0.012
UniRef100_Q04358 Potato DNA for copia-like transposable element ... 44 0.012
UniRef100_Q6L485 Putative polyprotein [Oryza sativa] 44 0.015
UniRef100_Q942G3 Putative copia-type polyprotein [Oryza sativa] 44 0.015
UniRef100_Q65XF0 Putative polyprotein [Oryza sativa] 44 0.015
UniRef100_Q9LH44 Copia-like retrotransposable element [Arabidops... 44 0.015
UniRef100_Q84MV7 Putative gag-pol polyprotein [Oryza sativa] 44 0.015
UniRef100_Q7XRW0 OSJNBb0058J09.8 protein [Oryza sativa] 44 0.015
UniRef100_Q8W5F4 Putative polyprotein [Oryza sativa] 44 0.015
UniRef100_Q7XQX2 OSJNBa0014K14.3 protein [Oryza sativa] 44 0.020
UniRef100_Q6F2M4 Putative polyprotein [Oryza sativa] 44 0.020
UniRef100_Q6AT91 Putative polyprotein [Oryza sativa] 44 0.020
UniRef100_Q94GW7 Putative polyprotein [Oryza sativa] 44 0.020
>UniRef100_Q851Y3 Putative polyprotein [Oryza sativa]
Length = 1299
Score = 46.2 bits (108), Expect = 0.003
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
NN+F F GI HQ QNGV ERK + L + Y + + + +
Sbjct: 459 NNEFSSFLSSEGILHQTSCPDTPPQNGVAERKNRHLLETARSLMYAMNVPKFLWSEAVMT 518
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQ 176
L+N PSR++ KTP E F N+
Sbjct: 519 ATYLINRTPSRILGMKTPCEMIFGKNE 545
>UniRef100_Q6L3Y5 Putative gag-pol polyprotein [Solanum demissum]
Length = 1133
Score = 45.8 bits (107), Expect = 0.004
Identities = 31/108 (28%), Positives = 49/108 (44%), Gaps = 11/108 (10%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N F F ++ GI HQ QNGV+ERK + + + + K + + + +
Sbjct: 575 SNQFKDFLQKAGIHHQLTVTYTPQQNGVSERKNRSIMNMARCLLFEKGLPKVLWAEAVNT 634
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKE 197
L N LP+R + KTP+E W T L VF I Y+ + +
Sbjct: 635 AVYLQNRLPTRAVEGKTPYEAWIGTKPSVS---HLKVFGCICYSYIPD 679
>UniRef100_Q84R78 Putative gag-pol polyprotein [Oryza sativa]
Length = 783
Score = 44.7 bits (104), Expect = 0.009
Identities = 29/83 (34%), Positives = 42/83 (49%), Gaps = 11/83 (13%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N+F FCEEYGI H Q NGV ERK + + ++ G+ +
Sbjct: 115 SNEFTSFCEEYGIIHERTHPYSPQSNGVAERKNRTLTEMVNAMLDSAGLSKEWWGEAILT 174
Query: 150 CNILLNMLPSRVMHKK-TPFETW 171
+LN++P++ HKK TPFE W
Sbjct: 175 ACHVLNIIPTK--HKKVTPFEEW 195
>UniRef100_Q84SW8 Gag-pol polyprotein [Oryza sativa]
Length = 1339
Score = 44.7 bits (104), Expect = 0.009
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + C+ GIE QQNGV ER+ + + + + + G+ ++
Sbjct: 583 SGEFARVCDAAGIERHLTVPYSPQQNGVVERRNRTVMAMARSLLKGMSVPGRMWGEAVRH 642
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M +TPFE W
Sbjct: 643 AVFLLNRLPTKAMGNRTPFEAW 664
>UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana]
Length = 1334
Score = 44.3 bits (103), Expect = 0.012
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 572 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 631
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 632 AVYILNRSPSKALNDITPEEKW 653
>UniRef100_Q9LPK1 F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 44.3 bits (103), Expect = 0.012
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 477 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 536
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 537 AVYILNRSPSKALNDITPEEKW 558
>UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana]
Length = 1334
Score = 44.3 bits (103), Expect = 0.012
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 572 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 631
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 632 AVYILNRSPSKALNDITPEEKW 653
>UniRef100_Q7XML8 OSJNBa0040D17.9 protein [Oryza sativa]
Length = 1319
Score = 44.3 bits (103), Expect = 0.012
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNYVLNRVPNR-NKDKTPYEIW 646
>UniRef100_Q04358 Potato DNA for copia-like transposable element [Solanum tuberosum]
Length = 675
Score = 44.3 bits (103), Expect = 0.012
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N F + G+ HQ QNG+ ERK + L + + K+ Q G+ L
Sbjct: 235 NEQLGSFFRKTGVVHQSSCPDTPQQNGIAERKNRHLLEATRALMFTSKVPQHLWGEALLT 294
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
L+N +PSR + KTPF+ +
Sbjct: 295 ATYLINRMPSRPLEFKTPFKVF 316
>UniRef100_Q6L485 Putative polyprotein [Oryza sativa]
Length = 1297
Score = 43.9 bits (102), Expect = 0.015
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTLNHVLNRVPNR-NKNKTPYEIW 646
>UniRef100_Q942G3 Putative copia-type polyprotein [Oryza sativa]
Length = 1433
Score = 43.9 bits (102), Expect = 0.015
Identities = 24/82 (29%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + CEE GI+ QQNG ER+ + + + ++ + G+ ++
Sbjct: 632 SGEFAQVCEEAGIQRHLTAPYSPQQNGAVERRNRTVMAMARSLLKGMRVPGRFWGEAVRH 691
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M +TPFE W
Sbjct: 692 AVHLLNRLPTKAMGDRTPFEAW 713
>UniRef100_Q65XF0 Putative polyprotein [Oryza sativa]
Length = 1391
Score = 43.9 bits (102), Expect = 0.015
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 655 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 711
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 712 LLTSNHVLNRIPNR-NKDKTPYEIW 735
>UniRef100_Q9LH44 Copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 43.9 bits (102), Expect = 0.015
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K C+E GI H QQNGV ER+ + + + KK+ K + +
Sbjct: 592 SREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIAT 651
Query: 150 CNILLNMLPSRVMHK-KTPFETW 171
L N LPS+ + K TP E W
Sbjct: 652 STYLQNRLPSKSLEKGVTPMEIW 674
>UniRef100_Q84MV7 Putative gag-pol polyprotein [Oryza sativa]
Length = 1283
Score = 43.9 bits (102), Expect = 0.015
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + C+E GIE QQNGV E + + + + + + G+ ++
Sbjct: 623 SGEFARVCDEAGIERHLTAPYSPQQNGVVEHRNRSVMAMARSLLKGMSVPGRMWGEAVRH 682
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M + TPFE W
Sbjct: 683 AVFLLNRLPTKSMGEHTPFEAW 704
>UniRef100_Q7XRW0 OSJNBb0058J09.8 protein [Oryza sativa]
Length = 1282
Score = 43.9 bits (102), Expect = 0.015
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 19/105 (18%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 479 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 535
Query: 147 LQKCNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFIL 191
L N +LN +P+R KTP+E W I FLF +L
Sbjct: 536 LLTSNHVLNRVPNR-NKDKTPYEIWIGRKTI----TFLFAHMGVL 575
>UniRef100_Q8W5F4 Putative polyprotein [Oryza sativa]
Length = 836
Score = 43.9 bits (102), Expect = 0.015
Identities = 29/94 (30%), Positives = 48/94 (50%), Gaps = 15/94 (15%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 306 SNEFDLFCEEHGIIHERTSLYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 362
Query: 147 LQKCNILLNMLPSRVMHKKTPFETWFVTNQIYKV 180
L N +LN +P+R KTP+E W +++
Sbjct: 363 LLTSNHVLNRVPNR-NKDKTPYEIWIGRKHHFRI 395
>UniRef100_Q7XQX2 OSJNBa0014K14.3 protein [Oryza sativa]
Length = 628
Score = 43.5 bits (101), Expect = 0.020
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 498 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 554
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 555 LLTSNHVLNRVPNR-NKDKTPYEIW 578
>UniRef100_Q6F2M4 Putative polyprotein [Oryza sativa]
Length = 1320
Score = 43.5 bits (101), Expect = 0.020
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
>UniRef100_Q6AT91 Putative polyprotein [Oryza sativa]
Length = 1320
Score = 43.5 bits (101), Expect = 0.020
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
>UniRef100_Q94GW7 Putative polyprotein [Oryza sativa]
Length = 1308
Score = 43.5 bits (101), Expect = 0.020
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.367 0.164 0.589
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 822,610,186
Number of Sequences: 2790947
Number of extensions: 27848315
Number of successful extensions: 152938
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 152782
Number of HSP's gapped (non-prelim): 219
length of query: 667
length of database: 848,049,833
effective HSP length: 134
effective length of query: 533
effective length of database: 474,062,935
effective search space: 252675544355
effective search space used: 252675544355
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC138453.6