BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137994.3 - phase: 0
(155 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q40369 RPE15 protein [Medicago sativa] 66 3e-10
UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum] 49 4e-05
UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum] 49 5e-05
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum] 48 9e-05
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum] 47 2e-04
UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solan... 46 3e-04
UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum] 39 0.040
UniRef100_UPI00003307CF UPI00003307CF UniRef100 entry 38 0.089
UniRef100_UPI00002BFA03 UPI00002BFA03 UniRef100 entry 38 0.089
UniRef100_UPI00002A19BA UPI00002A19BA UniRef100 entry 38 0.089
UniRef100_UPI0000467ECE UPI0000467ECE UniRef100 entry 37 0.12
UniRef100_UPI0000344141 UPI0000344141 UniRef100 entry 37 0.15
UniRef100_UPI000030F36C UPI000030F36C UniRef100 entry 37 0.15
UniRef100_UPI00002D7D62 UPI00002D7D62 UniRef100 entry 37 0.15
UniRef100_UPI00002ABBBF UPI00002ABBBF UniRef100 entry 37 0.15
UniRef100_UPI00002A5E54 UPI00002A5E54 UniRef100 entry 37 0.15
UniRef100_UPI00002A4067 UPI00002A4067 UniRef100 entry 37 0.15
UniRef100_UPI000029FE62 UPI000029FE62 UniRef100 entry 37 0.15
UniRef100_UPI000029AD6E UPI000029AD6E UniRef100 entry 37 0.15
UniRef100_UPI000027ECD4 UPI000027ECD4 UniRef100 entry 37 0.15
>UniRef100_Q40369 RPE15 protein [Medicago sativa]
Length = 219
Score = 65.9 bits (159), Expect = 3e-10
Identities = 31/58 (53%), Positives = 43/58 (73%)
Query: 77 AQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREGRLVKE 134
A++ P L+E+E T+ FLKTL + + + M+ SAPNNF++MVTM LEE VREG +V E
Sbjct: 15 ARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72
>UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum]
Length = 421
Score = 48.9 bits (115), Expect = 4e-05
Identities = 18/70 (25%), Positives = 42/70 (59%)
Query: 65 FKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEE 124
F+ YA WR+ A+++P ++E E +FL+ + Y+ ++++ F E++ + +E
Sbjct: 294 FREYAVRWREQAARVKPPMKELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVEN 353
Query: 125 GVREGRLVKE 134
G++ G++V +
Sbjct: 354 GIKSGKIVSQ 363
>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 48.5 bits (114), Expect = 5e-05
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 252 TQLQSLCQKSNESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 307
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 308 PFGSFSDVVICGERTESLIKTGKI 331
>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 47.8 bits (112), Expect = 9e-05
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 253 TQLQSLCQKSGESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 308
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 309 PFGSFSDVVICGERTESLIKTGKI 332
>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 46.6 bits (109), Expect = 2e-04
Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 4/84 (4%)
Query: 48 TYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVAS 107
T L Q ESFK Y AQ WR+ A+++P + E+E T +F+ TL + D M +
Sbjct: 253 TQLQSLCQKSGESFKEY----AQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSC 308
Query: 108 APNNFAEMVTMSMHLEEGVREGRL 131
+F+++V E ++ G++
Sbjct: 309 PFVSFSDVVICGERTESLIKTGKI 332
>UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 46.2 bits (108), Expect = 3e-04
Identities = 17/70 (24%), Positives = 41/70 (58%)
Query: 65 FKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEE 124
F+ YA WR+ A+++ ++E E +FL+ + Y+ ++++ F E++ + +E
Sbjct: 786 FREYAVRWREQAARVKLSMKESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVEN 845
Query: 125 GVREGRLVKE 134
G++ G++V +
Sbjct: 846 GIKSGKIVSQ 855
>UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum]
Length = 1716
Score = 38.9 bits (89), Expect = 0.040
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 58 KESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVT 117
K+ ++ +A WR A++RP + EKE ++F++ FAE+V
Sbjct: 308 KQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVA--------------KFAEIVK 353
Query: 118 MSMHLEEGVREGRLV 132
+ +E+G+R G++V
Sbjct: 354 IGETIEDGLRTGKIV 368
>UniRef100_UPI00003307CF UPI00003307CF UniRef100 entry
Length = 623
Score = 37.7 bits (86), Expect = 0.089
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQN+K+ FKT F+ +W + +A PH+ + + IFL
Sbjct: 504 QGSVSHLDFLTQNEKDVFKTAFELDQKWIIELSADRTPHISQAQSINIFL 553
>UniRef100_UPI00002BFA03 UPI00002BFA03 UniRef100 entry
Length = 157
Score = 37.7 bits (86), Expect = 0.089
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQN+K+ FKT F+ +W + +A PH+ + + IFL
Sbjct: 38 QGSVSHLDFLTQNEKDVFKTAFELDQKWIIELSADRTPHISQAQSINIFL 87
>UniRef100_UPI00002A19BA UPI00002A19BA UniRef100 entry
Length = 235
Score = 37.7 bits (86), Expect = 0.089
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQN+K+ FKT F+ +W + +A PH+ + + IFL
Sbjct: 128 QGSVSHLDFLTQNEKDVFKTAFELDQKWIIELSADRTPHISQAQSINIFL 177
>UniRef100_UPI0000467ECE UPI0000467ECE UniRef100 entry
Length = 1323
Score = 37.4 bits (85), Expect = 0.12
Identities = 29/104 (27%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Query: 41 PFPQAAMTYSSPLTQNDKESFK--TYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQ 98
P Q Y+ LT N++ K + K Y+ + ++ L++ E +K FL LDQ
Sbjct: 1053 PSKQLDNHYTKLLTTNEQIKLKMENFQKIYSYFLNHIITFLKQKLKQFE-SKSFLSHLDQ 1111
Query: 99 FYYDNMVASA--PNNFAEMVTMSMHLEEGV---REGRLVKENVP 137
Y + SA PNN + T + H E + + L+ +N+P
Sbjct: 1112 NYQNKNETSAKSPNNVVDTFTFNYHTENNIDVQKLNELILDNIP 1155
>UniRef100_UPI0000344141 UPI0000344141 UniRef100 entry
Length = 321
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 202 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 251
>UniRef100_UPI000030F36C UPI000030F36C UniRef100 entry
Length = 146
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 27 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 76
>UniRef100_UPI00002D7D62 UPI00002D7D62 UniRef100 entry
Length = 212
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 93 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 142
>UniRef100_UPI00002ABBBF UPI00002ABBBF UniRef100 entry
Length = 320
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 235 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 284
>UniRef100_UPI00002A5E54 UPI00002A5E54 UniRef100 entry
Length = 284
Score = 37.0 bits (84), Expect = 0.15
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL------KTLD 97
Q ++++ LT+ +KE+FKT F+ +W + A PH+ + + +F+ K L
Sbjct: 164 QGSVSHLEFLTKEEKETFKTAFEIDQRWIVELGADRTPHISQAQSVNVFVPADVHKKDLH 223
Query: 98 QFYYDNMVASAPNNFAEMVTMSMHLEEGVREGRL--VKENVPTDRSEDEDQE 147
Q ++ + + + S+ E + EG V +NV +++ E ++E
Sbjct: 224 QLHFQAWKKGLKSLY-YCRSKSIQRAENINEGSSTDVTKNVYSNKKESSNEE 274
>UniRef100_UPI00002A4067 UPI00002A4067 UniRef100 entry
Length = 245
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 126 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 175
>UniRef100_UPI000029FE62 UPI000029FE62 UniRef100 entry
Length = 452
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 333 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 382
>UniRef100_UPI000029AD6E UPI000029AD6E UniRef100 entry
Length = 247
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 128 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 177
>UniRef100_UPI000027ECD4 UPI000027ECD4 UniRef100 entry
Length = 220
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 44 QAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
Q ++++ LTQ++K+ FKT F+ +W D +A PH+ + + +FL
Sbjct: 101 QGSVSHLDFLTQDEKDVFKTAFELDQRWLVDLSADRTPHISQAQSINLFL 150
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,595,172
Number of Sequences: 2790947
Number of extensions: 11420577
Number of successful extensions: 30048
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 29942
Number of HSP's gapped (non-prelim): 128
length of query: 155
length of database: 848,049,833
effective HSP length: 116
effective length of query: 39
effective length of database: 524,299,981
effective search space: 20447699259
effective search space used: 20447699259
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC137994.3