BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137667.10 + phase: 0 /pseudo
(43 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6K2E9 Putative Sm protein F [Oryza sativa] 86 2e-16
UniRef100_O22823 Putative small nuclear ribonucleoprotein polype... 80 1e-14
UniRef100_Q9M1Z3 Putative U6 snRNA-associated Sm protein [Arabid... 80 1e-14
UniRef100_Q8LCS5 U6 snRNA-associated Sm-like protein [Arabidopsi... 80 1e-14
UniRef100_P62312 U6 snRNA-associated Sm-like protein LSm6 [Homo ... 77 9e-14
UniRef100_UPI0000021507 UPI0000021507 UniRef100 entry 77 1e-13
UniRef100_Q6IMW9 Zgc:92379 [Brachydanio rerio] 76 2e-13
UniRef100_UPI00003642C5 UPI00003642C5 UniRef100 entry 76 3e-13
UniRef100_Q7Q7G9 ENSANGP00000021121 [Anopheles gambiae str. PEST] 76 3e-13
UniRef100_Q9W2P5 CG9344-PA [Drosophila melanogaster] 75 4e-13
UniRef100_UPI0000433DB3 UPI0000433DB3 UniRef100 entry 75 5e-13
UniRef100_UPI00001C4021 UPI00001C4021 UniRef100 entry 74 1e-12
UniRef100_Q60PQ4 Hypothetical protein CBG22150 [Caenorhabditis b... 71 7e-12
UniRef100_Q95XN6 Lsm sm-like protein protein 6 [Caenorhabditis e... 71 7e-12
UniRef100_Q9GP42 Putative U6-snRNA-associated protein [Echinococ... 70 2e-11
UniRef100_UPI00001D147B UPI00001D147B UniRef100 entry 63 2e-09
UniRef100_UPI00001D09E5 UPI00001D09E5 UniRef100 entry 63 2e-09
UniRef100_Q9UUI1 U6 snRNA-associated Sm-like protein LSm6 [Schiz... 60 2e-08
UniRef100_Q86ID1 Similar to Homo sapiens (Human). Sm protein F [... 57 2e-07
UniRef100_Q8IE68 U6 snRNA-associated sm-like protein, putative [... 56 2e-07
>UniRef100_Q6K2E9 Putative Sm protein F [Oryza sativa]
Length = 101
Score = 86.3 bits (212), Expect = 2e-16
Identities = 41/43 (95%), Positives = 42/43 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL +G
Sbjct: 58 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDG 100
>UniRef100_O22823 Putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
Length = 91
Score = 80.1 bits (196), Expect = 1e-14
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G
Sbjct: 48 MNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDG 90
>UniRef100_Q9M1Z3 Putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
Length = 91
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/43 (88%), Positives = 40/43 (92%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST T+A+G
Sbjct: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADG 90
>UniRef100_Q8LCS5 U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/43 (88%), Positives = 40/43 (92%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST T+A+G
Sbjct: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTVNMTVADG 90
>UniRef100_P62312 U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
Length = 80
Score = 77.4 bits (189), Expect = 9e-14
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
>UniRef100_UPI0000021507 UPI0000021507 UniRef100 entry
Length = 80
Score = 77.0 bits (188), Expect = 1e-13
Identities = 36/38 (94%), Positives = 37/38 (96%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 78
>UniRef100_Q6IMW9 Zgc:92379 [Brachydanio rerio]
Length = 80
Score = 76.3 bits (186), Expect = 2e-13
Identities = 35/40 (87%), Positives = 38/40 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAF+RGNNVLYIST KR +
Sbjct: 41 MNIAVEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQKRKM 80
>UniRef100_UPI00003642C5 UPI00003642C5 UniRef100 entry
Length = 82
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLKNKYGDAF+RGNNVLYIST KR
Sbjct: 43 MNIAIEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQKR 80
>UniRef100_Q7Q7G9 ENSANGP00000021121 [Anopheles gambiae str. PEST]
Length = 79
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA++QTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Sbjct: 40 MNIALDQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 77
>UniRef100_Q9W2P5 CG9344-PA [Drosophila melanogaster]
Length = 79
Score = 75.5 bits (184), Expect = 4e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNI +EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Sbjct: 40 MNICLEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 77
>UniRef100_UPI0000433DB3 UPI0000433DB3 UniRef100 entry
Length = 78
Score = 75.1 bits (183), Expect = 5e-13
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLK+KYGDAFIRGNNVLYIST KR
Sbjct: 40 MNIALEQTEEYVNGQLKDKYGDAFIRGNNVLYISTQKR 77
>UniRef100_UPI00001C4021 UPI00001C4021 UniRef100 entry
Length = 104
Score = 73.9 bits (180), Expect = 1e-12
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEYVNGQLKNKY DAFIRGNNVLYIST KR
Sbjct: 41 MNIALEQTEEYVNGQLKNKYRDAFIRGNNVLYISTQKR 78
>UniRef100_Q60PQ4 Hypothetical protein CBG22150 [Caenorhabditis briggsae]
Length = 77
Score = 71.2 bits (173), Expect = 7e-12
Identities = 33/38 (86%), Positives = 36/38 (93%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEY NGQL+NKYGDAFIRGNNVLYISTS +
Sbjct: 40 MNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77
>UniRef100_Q95XN6 Lsm sm-like protein protein 6 [Caenorhabditis elegans]
Length = 77
Score = 71.2 bits (173), Expect = 7e-12
Identities = 33/38 (86%), Positives = 36/38 (93%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MNIA+EQTEEY NGQL+NKYGDAFIRGNNVLYISTS +
Sbjct: 40 MNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77
>UniRef100_Q9GP42 Putative U6-snRNA-associated protein [Echinococcus
multilocularis]
Length = 83
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 38
MN+ +EQTEEYV GQLKNKYGD FIRGNNV YIST KR
Sbjct: 42 MNVVLEQTEEYVEGQLKNKYGDTFIRGNNVFYISTQKR 79
>UniRef100_UPI00001D147B UPI00001D147B UniRef100 entry
Length = 348
Score = 62.8 bits (151), Expect = 2e-09
Identities = 29/31 (93%), Positives = 30/31 (96%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 31
MNIA+EQTEEYVNGQLKNKYGDAFIRGNN L
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNGL 71
>UniRef100_UPI00001D09E5 UPI00001D09E5 UniRef100 entry
Length = 98
Score = 62.8 bits (151), Expect = 2e-09
Identities = 29/31 (93%), Positives = 30/31 (96%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 31
MNIA+EQTEEYVNGQLKNKYGDAFIRGNN L
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNGL 71
>UniRef100_Q9UUI1 U6 snRNA-associated Sm-like protein LSm6 [Schizosaccharomyces
pombe]
Length = 75
Score = 59.7 bits (143), Expect = 2e-08
Identities = 26/34 (76%), Positives = 31/34 (90%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+A+E+TEEYVNG+ N YGDAFIRGNNVLY+S
Sbjct: 38 MNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71
>UniRef100_Q86ID1 Similar to Homo sapiens (Human). Sm protein F [Dictyostelium
discoideum]
Length = 83
Score = 56.6 bits (135), Expect = 2e-07
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 31
MNI MEQTEEY+NGQLK KYGD F+RGNN L
Sbjct: 50 MNIVMEQTEEYLNGQLKTKYGDCFLRGNNDL 80
>UniRef100_Q8IE68 U6 snRNA-associated sm-like protein, putative [Plasmodium
falciparum]
Length = 77
Score = 56.2 bits (134), Expect = 2e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+A+EQTEEY +G+L +KY DAFIRGNNV YI
Sbjct: 39 MNVALEQTEEYYDGELTDKYNDAFIRGNNVFYI 71
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,648,786
Number of Sequences: 2790947
Number of extensions: 1408192
Number of successful extensions: 3248
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 85
length of query: 43
length of database: 848,049,833
effective HSP length: 19
effective length of query: 24
effective length of database: 795,021,840
effective search space: 19080524160
effective search space used: 19080524160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)
Medicago: description of AC137667.10