BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137553.4 - phase: 0 /pseudo
(921 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6L3M7 Putative gag-pol protein [Solanum demissum] 96 4e-18
UniRef100_Q7XKY8 OSJNBa0022F16.16 protein [Oryza sativa] 96 5e-18
UniRef100_Q84KB0 Pol protein [Cucumis melo] 96 6e-18
UniRef100_Q9T0B7 Putative reverse-transcriptase-like protein [Ar... 94 1e-17
UniRef100_O64892 Polyprotein [Ananas comosus] 94 2e-17
UniRef100_Q7XUI0 OSJNBa0020J04.2 protein [Oryza sativa] 94 2e-17
UniRef100_Q6F2D6 Putative polyprotein [Solanum demissum] 94 2e-17
UniRef100_Q6L3Q2 Putative polyprotein, 3'-partial [Solanum demis... 93 4e-17
UniRef100_Q9XE44 Putative retroelement pol polyprotein [Arabidop... 92 5e-17
UniRef100_Q9SK57 Putative retroelement pol polyprotein [Arabidop... 92 7e-17
UniRef100_Q9XE68 Polyprotein [Sorghum bicolor] 92 9e-17
UniRef100_Q8S680 Putative polyprotein [Oryza sativa] 92 9e-17
UniRef100_Q7XZG5 Putative gag-pol polyprotein [Oryza sativa] 91 1e-16
UniRef100_Q7XXI2 OSJNBa0059H15.7 protein [Oryza sativa] 91 1e-16
UniRef100_Q7XRV6 OSJNBb0049I21.5 protein [Oryza sativa] 91 1e-16
UniRef100_Q75HH6 Putative polyprotein [Oryza sativa] 91 1e-16
UniRef100_Q7XEG7 Putative polyprotein [Oryza sativa] 91 2e-16
UniRef100_Q8W1D1 Gag-pol [Zea mays] 90 4e-16
UniRef100_Q9SJ92 Putative retroelement pol polyprotein [Arabidop... 90 4e-16
UniRef100_Q6MWG4 B1160F02.12 protein [Oryza sativa] 89 5e-16
>UniRef100_Q6L3M7 Putative gag-pol protein [Solanum demissum]
Length = 1438
Score = 96.3 bits (238), Expect = 4e-18
Identities = 46/63 (73%), Positives = 55/63 (87%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ SEL ELK+QL+DL++ F RPSVSPWGAPVL V+KKDGS+R+ IDYRQLNKVTIKN+
Sbjct: 615 MAPSELKELKEQLKDLLDKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNK 674
Query: 61 YLL 63
Y L
Sbjct: 675 YPL 677
>UniRef100_Q7XKY8 OSJNBa0022F16.16 protein [Oryza sativa]
Length = 1402
Score = 95.9 bits (237), Expect = 5e-18
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
MSV+EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 485 MSVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 544
Query: 61 YLL 63
YLL
Sbjct: 545 YLL 547
>UniRef100_Q84KB0 Pol protein [Cucumis melo]
Length = 923
Score = 95.5 bits (236), Expect = 6e-18
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +EL ELK QL++L++ F RPSVSPWGAPVL VKKKDGSMRL IDYR+LNKVT+KNR
Sbjct: 1 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
Query: 61 YLL 63
Y L
Sbjct: 61 YPL 63
Score = 37.7 bits (86), Expect = 1.6
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 350 RFEVFSDHKTLKYLFDQKELNVR 372
+ ++F+DHK+LKY F QKELN+R
Sbjct: 350 KIQIFTDHKSLKYFFTQKELNMR 372
>UniRef100_Q9T0B7 Putative reverse-transcriptase-like protein [Arabidopsis thaliana]
Length = 1240
Score = 94.4 bits (233), Expect = 1e-17
Identities = 45/63 (71%), Positives = 53/63 (83%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +E+AELKKQL+DL+ F RPS SPWGAPVL VKKKDGS RL IDYR+LN+VT+KNR
Sbjct: 499 MAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNR 558
Query: 61 YLL 63
Y L
Sbjct: 559 YPL 561
Score = 36.2 bits (82), Expect = 4.6
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 350 RFEVFSDHKTLKYLFDQKELNVR 372
+ +VF+DHK+LKY+F Q ELN+R
Sbjct: 848 KVQVFTDHKSLKYIFTQPELNLR 870
>UniRef100_O64892 Polyprotein [Ananas comosus]
Length = 871
Score = 94.0 bits (232), Expect = 2e-17
Identities = 44/63 (69%), Positives = 54/63 (84%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +EL EL+ QL+DL++ F RPSVSPWGAPVL VKKKDGS+RL +DYR+LNKVTIKN+
Sbjct: 25 MAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVTIKNK 84
Query: 61 YLL 63
Y L
Sbjct: 85 YPL 87
Score = 40.0 bits (92), Expect = 0.32
Identities = 17/23 (73%), Positives = 21/23 (90%)
Query: 350 RFEVFSDHKTLKYLFDQKELNVR 372
R EV++DHK+LKYLF QKELN+R
Sbjct: 374 RCEVYTDHKSLKYLFTQKELNLR 396
>UniRef100_Q7XUI0 OSJNBa0020J04.2 protein [Oryza sativa]
Length = 1537
Score = 94.0 bits (232), Expect = 2e-17
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V+EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 485 MPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 544
Query: 61 YLL 63
YLL
Sbjct: 545 YLL 547
>UniRef100_Q6F2D6 Putative polyprotein [Solanum demissum]
Length = 1769
Score = 94.0 bits (232), Expect = 2e-17
Identities = 45/61 (73%), Positives = 51/61 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +EL EL QLEDL+ F RPSVSPWGAPVL VKKKDG+MR+ IDYRQLNKVT+KNR
Sbjct: 856 MAPAELRELSAQLEDLLGKGFIRPSVSPWGAPVLFVKKKDGTMRMCIDYRQLNKVTVKNR 915
Query: 61 Y 61
Y
Sbjct: 916 Y 916
>UniRef100_Q6L3Q2 Putative polyprotein, 3'-partial [Solanum demissum]
Length = 1622
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +EL EL QL+DL+ F RPSVSPWGAPVL VKKKDG+MR+ IDYRQLNKVT+KNR
Sbjct: 819 MAPAELKELSVQLQDLLGKGFIRPSVSPWGAPVLFVKKKDGTMRMCIDYRQLNKVTVKNR 878
Query: 61 YLL 63
Y L
Sbjct: 879 YPL 881
>UniRef100_Q9XE44 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 949
Score = 92.4 bits (228), Expect = 5e-17
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +E+AELKKQLE+L+ F RPS SPWGAPVL VKKKDGS RL IDYR LNKVT+KN+
Sbjct: 162 MAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNK 221
Query: 61 YLL 63
Y L
Sbjct: 222 YPL 224
>UniRef100_Q9SK57 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1611
Score = 92.0 bits (227), Expect = 7e-17
Identities = 44/63 (69%), Positives = 53/63 (83%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +E+A+LKKQLE+L++ F RPS SPWGAPVL VKKKDGS RL IDYR LNKVT+KN+
Sbjct: 667 MAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNK 726
Query: 61 YLL 63
Y L
Sbjct: 727 YPL 729
>UniRef100_Q9XE68 Polyprotein [Sorghum bicolor]
Length = 924
Score = 91.7 bits (226), Expect = 9e-17
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
MSV EL ELKKQL++L + + RPS SPWG+PVL VKKKDGSMR+ IDYR LN VT+KN+
Sbjct: 1 MSVDELEELKKQLKELADKGYIRPSASPWGSPVLFVKKKDGSMRMCIDYRNLNAVTVKNK 60
Query: 61 YLL 63
Y L
Sbjct: 61 YPL 63
>UniRef100_Q8S680 Putative polyprotein [Oryza sativa]
Length = 1569
Score = 91.7 bits (226), Expect = 9e-17
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 9/91 (9%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V+EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 649 MPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 708
Query: 61 YLLRELMI*WIS*WVQKFLARLI*GKVITRL 91
Y L W+ +L KV +++
Sbjct: 709 YPLP---------WIDDLFDQLKGAKVFSKI 730
>UniRef100_Q7XZG5 Putative gag-pol polyprotein [Oryza sativa]
Length = 823
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V++L ELKKQ+ +L E +F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 1 MPVNDLEELKKQIRELQEKEFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 60
Query: 61 YLL 63
Y L
Sbjct: 61 YPL 63
>UniRef100_Q7XXI2 OSJNBa0059H15.7 protein [Oryza sativa]
Length = 920
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V+EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 131 MPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 190
Query: 61 YLL 63
Y L
Sbjct: 191 YPL 193
>UniRef100_Q7XRV6 OSJNBb0049I21.5 protein [Oryza sativa]
Length = 1644
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V+EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 640 MPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 699
Query: 61 YLL 63
Y L
Sbjct: 700 YPL 702
>UniRef100_Q75HH6 Putative polyprotein [Oryza sativa]
Length = 1312
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V++L ELKKQ+ +L E +F RPS SPWGAPVL VKKKDGSMR+ +DYR LN+VTIKN+
Sbjct: 465 MPVNDLEELKKQIRELQEKEFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNK 524
Query: 61 YLL 63
Y L
Sbjct: 525 YPL 527
>UniRef100_Q7XEG7 Putative polyprotein [Oryza sativa]
Length = 1093
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/63 (68%), Positives = 53/63 (83%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +ELAE+K+Q+E+L + RPS SPWGAPVLLVKKKDGS R+ IDYR LN+VTIKN+
Sbjct: 255 MAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNK 314
Query: 61 YLL 63
YLL
Sbjct: 315 YLL 317
>UniRef100_Q8W1D1 Gag-pol [Zea mays]
Length = 1470
Score = 89.7 bits (221), Expect = 4e-16
Identities = 42/63 (66%), Positives = 50/63 (78%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M V +L ELKKQ+E+L+E F RPS SPWGAPVL V KKDGS R+ +DYR LN+VTIKN+
Sbjct: 549 MDVKDLVELKKQIEELLEKGFIRPSSSPWGAPVLFVNKKDGSRRMCVDYRSLNEVTIKNK 608
Query: 61 YLL 63
Y L
Sbjct: 609 YPL 611
Score = 37.4 bits (85), Expect = 2.1
Identities = 14/21 (66%), Positives = 20/21 (94%)
Query: 352 EVFSDHKTLKYLFDQKELNVR 372
++F+DHK+LKY+F QKELN+R
Sbjct: 900 KIFTDHKSLKYIFTQKELNLR 920
>UniRef100_Q9SJ92 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1411
Score = 89.7 bits (221), Expect = 4e-16
Identities = 44/63 (69%), Positives = 50/63 (78%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M+ +E+ ELKKQLEDL+ F RPS SPWGAPVL VKKKDGS RL IDYR LN VT+KN+
Sbjct: 525 MAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNK 584
Query: 61 YLL 63
Y L
Sbjct: 585 YPL 587
Score = 37.0 bits (84), Expect = 2.7
Identities = 14/23 (60%), Positives = 21/23 (90%)
Query: 350 RFEVFSDHKTLKYLFDQKELNVR 372
+ +VF+DHK+LKY+F+Q ELN+R
Sbjct: 874 KVQVFTDHKSLKYIFNQPELNLR 896
>UniRef100_Q6MWG4 B1160F02.12 protein [Oryza sativa]
Length = 713
Score = 89.4 bits (220), Expect = 5e-16
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNR 60
M ++EL ELKKQ+ +L E F RPS SPWGAPVL VKKKDGS+R+ +DYR LN+VTIKN+
Sbjct: 139 MPINELEELKKQIAELQEKGFIRPSSSPWGAPVLFVKKKDGSLRMCVDYRALNEVTIKNK 198
Query: 61 YLL 63
Y L
Sbjct: 199 YPL 201
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.366 0.163 0.618
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,182,000,255
Number of Sequences: 2790947
Number of extensions: 39736635
Number of successful extensions: 243705
Number of sequences better than 10.0: 1913
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 825
Number of HSP's that attempted gapping in prelim test: 241345
Number of HSP's gapped (non-prelim): 2689
length of query: 921
length of database: 848,049,833
effective HSP length: 137
effective length of query: 784
effective length of database: 465,690,094
effective search space: 365101033696
effective search space used: 365101033696
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 80 (35.4 bits)
Medicago: description of AC137553.4