BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137553.12 + phase: 0
(535 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6L3U7 Putative RNase H domain containing protein [Sol... 125 3e-27
UniRef100_Q5XWN7 Hypothetical protein [Solanum tuberosum] 114 5e-24
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 113 1e-23
UniRef100_Q8S391 Reverse transcriptase [Medicago sativa] 112 2e-23
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 110 1e-22
UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcrip... 106 2e-21
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 105 4e-21
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 103 2e-20
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 100 2e-19
UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa] 97 2e-18
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 95 6e-18
UniRef100_Q9FYJ4 F17F8.5 [Arabidopsis thaliana] 92 4e-17
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 90 1e-16
UniRef100_O81284 T14P8.10 protein [Arabidopsis thaliana] 89 3e-16
UniRef100_Q9XIH8 Putative non-LTR retrolelement reverse transcri... 87 1e-15
UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like... 87 2e-15
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 86 4e-15
UniRef100_Q9SY58 F14N23.4 [Arabidopsis thaliana] 85 6e-15
UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sa... 84 1e-14
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 84 1e-14
>UniRef100_Q6L3U7 Putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 125 bits (314), Expect = 3e-27
Identities = 117/451 (25%), Positives = 188/451 (40%), Gaps = 40/451 (8%)
Query: 66 SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNMLPK---- 121
S WS ++ +N W++ G+ ++ W DNW G + N+LP
Sbjct: 63 SHTWSKMLKIRHSVENNILWIIYAGN-VSMWWDNWMGNGALS---------NILPPPSHY 112
Query: 122 ---KLRNYMQNFNWCFPDDILSLFPDM---RLLASKVTIPKHCIRDKLIWKHSNNGELTL 175
+++++ W F D + + P ++++ + P D IW S NG T
Sbjct: 113 NKDNVKDFIHKREWDF-DKLSDILPPQVVNQIVSIPIGDPNQS--DYAIWIPSENGHFTT 169
Query: 176 QDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSL 235
+ AY K + IW P + L WR + NKLP D + N+ S C
Sbjct: 170 KSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYDTVGKFVDNIDSNCVC 229
Query: 236 CNNM-SETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDL----WNICNGSWNPQCKT 290
C NM +ET +H+FL A LW F G L S +L WN+ +
Sbjct: 230 CKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKTWWNV---QTHNSIHN 286
Query: 291 VIIASL-INIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASPSI---S 346
VII +L I I IW R ++ + K W ++ + + +S ++ PS +
Sbjct: 287 VIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMEN---HVWWNLKMSLRMTFPSFEIGN 343
Query: 347 NFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSLSSCGGIFRNCNSEML 406
++ L +L P KI+ W P +N K NTDGS S + G I R+ M+
Sbjct: 344 SWRDLLNKVESLRPYPKWKIVH--WNTPNINCVKINTDGSFSSGNAGLGWIVRDHTRRMI 401
Query: 407 ICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRN 466
+ F + ++ AE A I + + N +LE+DS+LV+ +N ++
Sbjct: 402 MAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLKIKG 461
Query: 467 RWMNCMLLTRNMNFIATHIFRERNVCADLLA 497
+ + + MN H +RE N AD LA
Sbjct: 462 VVEDIIQVVAKMNCEVNHCYREANQVADALA 492
>UniRef100_Q5XWN7 Hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 114 bits (286), Expect = 5e-24
Identities = 98/346 (28%), Positives = 147/346 (42%), Gaps = 17/346 (4%)
Query: 161 DKLIWKHSNNGELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDD 220
D IW S NG T + AY K + IW P + L WR + NKLP D
Sbjct: 333 DYAIWIPSENGHFTTKSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYD 392
Query: 221 NLMNKGCNLPSMCSLCNNM-SETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDL--- 276
+ N+ S C C NM +ET +H+FL A LW F G L S +L
Sbjct: 393 TVGKFVDNIDSNCVCCKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKT 452
Query: 277 -WNICNGSWNPQCKTVIIASL-INIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTG 334
WN+ + VII +L I I IW R ++ + K W ++ + +
Sbjct: 453 WWNV---QTHNSIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMEN---HVWWNL 506
Query: 335 NLSRKVASPSI---SNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSL 391
+S ++ PS +++ L +L P KI+ W P +N K NTDGS S
Sbjct: 507 KMSLRMTFPSFEIGNSWRDLLNKVESLRPYPKWKIVH--WNTPNINCVKINTDGSFSSGN 564
Query: 392 SSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
+ G I R+ M++ F + ++ AE A I + + N +LE+DS+LV+
Sbjct: 565 AGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVV 624
Query: 452 RAFKNQSIVPWHLRNRWMNCMLLTRNMNFIATHIFRERNVCADLLA 497
+N ++ + + + MN H +RE N AD LA
Sbjct: 625 DMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVADALA 670
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 113 bits (283), Expect = 1e-23
Identities = 130/535 (24%), Positives = 222/535 (41%), Gaps = 85/535 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSR-----VIRNS 57
++W+K+C EGG+G+RS +N A K+ W L Q +E WA+V+R + V S
Sbjct: 702 LSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTS 761
Query: 58 TCIHHHVYSSIWSGAKTEFQN-LIDNSNWLVGDGDTINCWLDNW-CGETLVDLFDIDSQQ 115
+SS W + ++ W+ GDG TI WLD W E LV+L
Sbjct: 762 WLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL------G 815
Query: 116 LNMLPKKLRNYMQNFNWC----FPDDILSLF-PD--MRLLASKVTIPKHCIRDKLIWKHS 168
+M+P+ R + W + +IL L+ P+ R L S V D++ WK +
Sbjct: 816 TDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGT 875
Query: 169 NNGELTLQDAYKFKKTNF---PKV-NWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMN 224
+G T++ AY + + P + ++ IW P + +W N + T+ +
Sbjct: 876 QDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVR 935
Query: 225 KGCNLPSMCSLCNNMSETTHHLFLECSFALNLW----------SWFAGILN--CSINIQS 272
+ + ++CS+CN ET H+ +C +W +F+ L N+
Sbjct: 936 RHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDP 995
Query: 273 KEDLWNICNG-----SWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASII 327
+ +W G +W +C V +R+ ++ + +A +
Sbjct: 996 VKGIWPTLFGMGIWWAWKWRCCDVF---------------GERKICRDRLKFIKDMAEEV 1040
Query: 328 SNASLTGNLSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVI-WQPPPLNWTKCNTDGS 386
R+V ++ N P ++ +I WQ P W K TDG+
Sbjct: 1041 ----------RRVHVGAVGN------------RPNGVRVERMIRWQVPSDGWVKITTDGA 1078
Query: 387 TSGS--LSSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLE 444
+ G+ L++ GG RN E L F N G + AEL GA + +A + + L+
Sbjct: 1079 SRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELD 1138
Query: 445 VDSELVIRAFKNQSIVPWHLRNRWMNCM--LLTRNMNFIATHIFRERNVCADLLA 497
+D +LV+ F + + H + + TR+ +H++RE N AD LA
Sbjct: 1139 LDCKLVV-GFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLA 1192
>UniRef100_Q8S391 Reverse transcriptase [Medicago sativa]
Length = 168
Score = 112 bits (281), Expect = 2e-23
Identities = 54/162 (33%), Positives = 82/162 (50%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQWAQVLRSRVIRNSTCIHHH 63
V+W KVC D G L +R +N AS + + W L S EQWA + R R + N T H+
Sbjct: 3 VSWSKVCQSKDTGVLAVRDPAQVNRASLLLLTWKLITSNEQWAHICRVRFLNNYTPKSHY 62
Query: 64 VYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNMLPKKL 123
+ SS+W G K+ Q + +S W VG+G I W D W + + ++I ++ + K+
Sbjct: 63 ITSSVWPGLKSNIQYIFYHSIWTVGNGRNIRFWSDKWLDSPIAEHWNIPPSLISDIELKV 122
Query: 124 RNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIW 165
+++ N WC PD I P + +T+P I D L W
Sbjct: 123 NDFIVNGTWCLPDYIQQKDPALAAKIQSITLPVDDIPDVLHW 164
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 110 bits (275), Expect = 1e-22
Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 61/344 (17%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQWAQVLRSRVIRNSTCIHHH 63
V W VC+ D+GGLG+ L +N A K W L E W +++ ++ +
Sbjct: 645 VNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENEEGWWQEIIYAKYCSDKPLSGLR 704
Query: 64 VY---SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE----------------- 103
+ S W G + +VG+G+ W D+W G
Sbjct: 705 LKAGSSHFWQGVMEVKDDFFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITK 764
Query: 104 --TLVDL----FDIDSQQLNMLPKKLRNYMQNFN-WCFPDDILSLFPDMRLLASKVTIPK 156
T+ DL D + ++ KLR++ + N W + + +
Sbjct: 765 RITIADLNRKGIDCMKFRRDLHGDKLRDWRKIVNSW-----------------EGLNLVE 807
Query: 157 HCIRDKLIWKHSNNGELTLQDAY---KFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFML 213
+C +DKL W S +G+ T++ Y K ++T+FP K IW +P + +W F
Sbjct: 808 NC-KDKLWWTLSKDGKFTVRSFYRALKLQQTSFPN----KKIWKFRVPLKIRIFIWFFTK 862
Query: 214 NKLPTDDNLMNKGCNL-PSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQ- 271
NK+ T DNL+ +G + C C+ + ET HLF +C A +W+ I+ C++N++
Sbjct: 863 NKILTKDNLLKRGWRKGDNKCQFCDKV-ETVQHLFFDCPLARLIWN----IIACALNVKP 917
Query: 272 --SKEDLWNICNGSWNPQCKTVIIASLINIINSIWYARNQRRFQ 313
S++DL+ S + K ++I + ++ SIW RN+ F+
Sbjct: 918 VLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCRNKACFE 961
>UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 106 bits (264), Expect = 2e-21
Identities = 108/476 (22%), Positives = 190/476 (39%), Gaps = 76/476 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEE-QWAQVLRSRVIRNSTCIH- 61
V+W+K+C + GGLG R + N A K W + Q +A+ +SR + +
Sbjct: 615 VSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEA 674
Query: 62 ------HHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDID--- 112
+ SI G + + L VG+G ++N W+D W +FDI
Sbjct: 675 DLGVRPSYACCSILFGRELLAKGLRKE----VGNGKSLNVWMDPW-------IFDIAPRL 723
Query: 113 ------SQQLNMLPKKLRNYMQNFNWCFPDDILS--LFP-DMRLLASKVTIPKHCIRDKL 163
S L++ L N+ C+ D+L +P D+ L+ + + + D
Sbjct: 724 PLQRHFSVNLDLKVNDLINFEDR---CWKRDLLEELFYPTDVELITKRNPVVN--MDDFW 778
Query: 164 IWKHSNNGELTLQDAY----------KFKKTNF-PKVNWAKH-IWSPDIPPSKALLVWRF 211
+W H+ GE +++ Y ++ N P N K +WS P + +WR
Sbjct: 779 VWLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRI 838
Query: 212 MLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQ 271
+ LP D ++ +G ++ C +C + E+T+H+ CS A +W+ +G+ Q
Sbjct: 839 LSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWA-LSGVPTPEFGFQ 897
Query: 272 SKEDLWNICNGSWNPQCKTVIIASLIN-----IINSIWYARNQRRFQNIKIHWRSSIASI 326
+ NI K +++ L+ ++ +W RN+ F I +SI
Sbjct: 898 NASIFANI--QFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIV-- 953
Query: 327 ISNASLTGNLSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVI--WQPPPLNWTKCNTD 384
K+ ++ F + V+ ++I W+PPP W KCN
Sbjct: 954 ------------KIQEDTLEWFQAQSQIRVS-ESEEGQRVIPFTHSWEPPPEGWVKCNIG 1000
Query: 385 GSTSGSLSSCGG--IFRNCNSEMLICFGEN-TGIGNSLHAELSGAMRAIELAISHQ 437
+ SG CGG + R+ + +++ G N A L AI+ SH+
Sbjct: 1001 SAWSGKKKVCGGAWVLRDEHGSVILHSRRAFNGCSNKKEASLRCIFWAIDSMRSHR 1056
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 105 bits (261), Expect = 4e-21
Identities = 113/471 (23%), Positives = 186/471 (38%), Gaps = 39/471 (8%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W L Q +A+V+++R ++ + +
Sbjct: 995 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDA 1054
Query: 63 HV---YSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V S W+ L + L+GDG I LDN + + M
Sbjct: 1055 KVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMT 1114
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNGELTLQD 177
L ++ + + D +S F D ++ + K DK+IW ++ GE T++
Sbjct: 1115 INNLFERKGSY-YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1173
Query: 178 AYKF----KKTNFPKVN-------WAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKG 226
Y TN P +N IW+ I P +WR + L T + L +G
Sbjct: 1174 GYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRG 1233
Query: 227 CNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAG---ILNCSINIQSKEDLWNICNGS 283
+ +C C+ +E+ +H C FA W W + I N ++ +E++ NI N
Sbjct: 1234 MRIDPICPRCHRENESINHALFTCPFATMAW-WLSDSSLIRNQLMSNDFEENISNILNFV 1292
Query: 284 WNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASP 343
+ + +I IW ARN F + S +++S + T + S
Sbjct: 1293 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFR---ESPSKTVLSAKAETHDWLNATQSH 1349
Query: 344 SISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTD-GSTSGSLSSCGGIFRNCN 402
KK T P R ++ W+ PP + KCN D G L + GG +
Sbjct: 1350 --------KK---TPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNH 1398
Query: 403 SEMLICFG--ENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
I +G + N L AE + A++ + +++E D + +I
Sbjct: 1399 YGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI 1449
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 103 bits (256), Expect = 2e-20
Identities = 113/470 (24%), Positives = 185/470 (39%), Gaps = 37/470 (7%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W L Q +A+V+++R ++ + +
Sbjct: 1221 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDA 1280
Query: 63 HV---YSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V S W+ L + L+GDG I LDN + + M
Sbjct: 1281 KVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMT 1340
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNGELTLQD 177
L ++ + + D +S F D ++ + K DK+IW ++ GE T++
Sbjct: 1341 INNLFERKGSY-YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1399
Query: 178 AYKF----KKTNFPKVN-------WAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKG 226
Y TN P +N IW+ I P +WR + L T + L +G
Sbjct: 1400 GYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRG 1459
Query: 227 CNLPSMCSLCNNMSETTHHLFLECSFALNLW--SWFAGILNCSINIQSKEDLWNICNGSW 284
+ C C+ +E+ +H C FA W S + I N ++ +E++ NI N
Sbjct: 1460 MRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQ 1519
Query: 285 NPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVASPS 344
+ + +I IW ARN F + S +++S + T + S
Sbjct: 1520 DTTMSDFHKLLPVWLIWRIWKARNNVVFNKFR---ESPSKTVLSAKAETHDWLNATQSH- 1575
Query: 345 ISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTD-GSTSGSLSSCGGIFRNCNS 403
KK T P R ++ W+ PP + KCN D G L + GG +
Sbjct: 1576 -------KK---TPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHY 1625
Query: 404 EMLICFG--ENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVI 451
I +G + N L AE + A++ + +++E D + +I
Sbjct: 1626 GTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI 1675
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 99.8 bits (247), Expect = 2e-19
Identities = 106/472 (22%), Positives = 185/472 (38%), Gaps = 81/472 (17%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQW-AQVLRSRVIRNSTCIHH 62
++W K+ + GGLG R + N A K W L Q + ++VLR++ C
Sbjct: 1040 LSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRP 1099
Query: 63 HVYSSI---WSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
S++ W + + L + W VGDG IN W D W + + N++
Sbjct: 1100 KQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGW-SRKPMTPRGANLV 1158
Query: 120 PKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHC-IRDKLIWKHSNNGELTLQDA 178
K + + + + +D+LS +A+ +IP H + D L W G T++ A
Sbjct: 1159 TK-VEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSA 1217
Query: 179 YKFKK--------TNFPKV-NWA-------KHIWSPDIPPSKALLVWRFMLNKLPTDDNL 222
YK ++ P V NW K +W +P +WR N L NL
Sbjct: 1218 YKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANL 1277
Query: 223 MNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNG 282
++G ++ + C +C +E HLF +C +W ++N+ E+L ++
Sbjct: 1278 HHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQ--------ALNL---EELRSMLEQ 1326
Query: 283 SWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGNLSRKVAS 342
+ + N++ SI+ R
Sbjct: 1327 QTSGK----------NVLQSIYCRPENER------------------------------- 1345
Query: 343 PSISNFVILKKFCVTLHPPRAPKIIE-VIWQPPPLNWTKCNTDGSTSGSL--SSCGGIFR 399
S V L ++ + ++P+ E +W+ PPLN+ K NTDG+ S ++ G + R
Sbjct: 1346 --TSAIVCLWQWWKERNEEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIR 1403
Query: 400 NCNSEMLIC-FGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELV 450
+ +L G + ++ HAE+ AI+ A + LE DS ++
Sbjct: 1404 DQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETDSMML 1455
>UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]
Length = 1833
Score = 96.7 bits (239), Expect = 2e-18
Identities = 66/278 (23%), Positives = 115/278 (40%), Gaps = 38/278 (13%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQW-AQVLRSRVIRNSTCIHH 62
+AW+K+ GGLG R + C N A + W L S + A+V +++ N +
Sbjct: 751 IAWEKILYPKSHGGLGFRDMKCFNQALLARQAWRLLTSPDSLCARVFKAKYYPNGNLVDT 810
Query: 63 H---VYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDIDSQQLNML 119
V SS+W G + L + W VG+G I W W + +N+L
Sbjct: 811 AFPTVSSSVWKGIQHGLDLLKQGTIWRVGNGHNIKIWRHKWVPH---------GEHINVL 861
Query: 120 PKKLRNYM-------QNFNWCFPDDILS--LFPDMRLLASKVTIPKHCIRDKLIWKHSNN 170
KK RN + N C+ + ++ L + K+ +P H + D W H +
Sbjct: 862 EKKGRNRLIYVNELINEENRCWNETLVRHVLKEEDANEVLKIRLPNHQMDDFPAWHHEKS 921
Query: 171 GELTLQDAYKFK---------------KTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNK 215
G T++ AYK T+ + W++ +W+ + + +W+ +K
Sbjct: 922 GLFTVKSAYKLAWNLSGKGVVQSSSSTATSGERKIWSR-VWNAKVQAKVKIFIWKLAQDK 980
Query: 216 LPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFA 253
LPT +N + + C +C E ++H +EC+ A
Sbjct: 981 LPTWENKRRRKIEMNGTCPVCGTKGENSYHATVECTKA 1018
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 94.7 bits (234), Expect = 6e-18
Identities = 100/411 (24%), Positives = 162/411 (39%), Gaps = 52/411 (12%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHH 62
VAWK++ EGGLG R L N A K W + Q +A+V+++R ++++ I
Sbjct: 460 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDA 519
Query: 63 HVYSSI---WSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFD----IDSQQ 115
S WS + L + +++GDG TI +DN +VD + +Q
Sbjct: 520 KTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN-----VVDSHPPRPLLTDEQ 574
Query: 116 LNMLPKKLRNYMQN--FNWCFPDDILSLFPDM--RLLASKVTIPKHCIRDKLIWKHSNNG 171
N L L N Q+ + C+ + L F D ++ + D+LIW +++ G
Sbjct: 575 HNGL--SLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTG 632
Query: 172 ELTLQDAYKFKKTNFPK------------VNWAKHIWSPDIPPSKALLVWRFMLNKLPTD 219
+ T++ Y + T+ P V+ IW+ I P +WR + LPT
Sbjct: 633 DYTVRSGY-WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTT 691
Query: 220 DNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF-AGILNCSINIQSKEDLWN 278
D L +G + C C +E+ +H C FA W + SI + ED N
Sbjct: 692 DRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIED--N 749
Query: 279 ICNGSWNPQCKTVIIASLIN---IINSIWYARNQRRFQNIKIHWRSSIASIISNASLTGN 335
I N Q T+ + + ++ IW ARN F N++ S +++ + T
Sbjct: 750 ISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLR---ESPSITVVRAKAETNE 806
Query: 336 LSRKVASPSISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCNTDGS 386
+ P R W P + + KCN D S
Sbjct: 807 WLNATQTQGPRRL-----------PKRTTAAGNTTWVKPQMPYIKCNFDAS 846
>UniRef100_Q9FYJ4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 92.0 bits (227), Expect = 4e-17
Identities = 68/276 (24%), Positives = 119/276 (42%), Gaps = 25/276 (9%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTCIHH 62
++W VC EGGLG+R+L N S +K+ W + S W + + +IR +
Sbjct: 507 ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL 566
Query: 63 HVYSSIWSGAKTEFQNLIDNSNWL----VGDGDTINCWLDNWCG-----ETLVDLFDID- 112
+S+ S + + D + VG+G++ + W D+W +T+ D ID
Sbjct: 567 KQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDL 626
Query: 113 --SQQLNMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIWKHSNN 170
++ ++ R + ++I + R+ S D ++W+ N+
Sbjct: 627 GIPREASVADAWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDA-------EDTVLWRGKND 679
Query: 171 ---GELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLM--NK 225
+ +D + K V+W K +W P AL W + N+LPT D ++ N
Sbjct: 680 VFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNS 739
Query: 226 GCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFA 261
++ C LC N S+T HLF CS+A +W+ A
Sbjct: 740 SGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALA 775
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 90.1 bits (222), Expect = 1e-16
Identities = 100/438 (22%), Positives = 161/438 (35%), Gaps = 69/438 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTCIHH 62
+ KK+ GG G + L C N A K W LF S+ +Q+ +SR N+ ++
Sbjct: 791 IGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNA 850
Query: 63 HVY---SSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-------TLVDLFDID 112
S W + L L+G+G+ N W+D W + L L +I
Sbjct: 851 RQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIH 910
Query: 113 SQQLNMLPKKLRNY-MQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKLIWKHSNNG 171
+ +++ RN+ ++ F + + L R L S D W +NNG
Sbjct: 911 MKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPLISS--------EDSYCWAGTNNG 962
Query: 172 ELTLQDAYK----------FKKTN-FPKVN-WAKHIWSPDIPPSKALLVWRFMLNKLPTD 219
T++ Y+ FK+ + +P VN +WS + P + +W+ + L +
Sbjct: 963 LYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVE 1022
Query: 220 DNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF-----AGILNCSINIQSKE 274
D L ++G C C ET +HL +C FA +W+ A SI
Sbjct: 1023 DRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINH 1082
Query: 275 DLWNICNGSWNPQCKTVIIASLINIINSIWYARNQRRFQNIKIHWRSSIASIISNASLTG 334
+ N N +TV ++ IW RN+ FQ + +A +L
Sbjct: 1083 VIQNSQNFGIPRHMRTVSPW----LLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWI 1138
Query: 335 NLSRKVA---SPSISNFVILKKFCVTLHPPRAPKIIEVIWQPPPLNWTKCN--TDGSTSG 389
N K + SPS E W PPP KCN S
Sbjct: 1139 NAQEKSSGGVSPS-----------------------EHKWNPPPAGELKCNIGVAWSRQK 1175
Query: 390 SLSSCGGIFRNCNSEMLI 407
L+ + R+ ++L+
Sbjct: 1176 QLAGVSWVLRDSMGQVLL 1193
>UniRef100_O81284 T14P8.10 protein [Arabidopsis thaliana]
Length = 657
Score = 89.0 bits (219), Expect = 3e-16
Identities = 68/276 (24%), Positives = 114/276 (40%), Gaps = 44/276 (15%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ---------WAQVLRSRVI 54
++W VC+ + GGLG++ L N +K+ W LF + W ++ + R +
Sbjct: 401 ISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLLFTASGSLWVSWVRWVWRKLCKLREV 460
Query: 55 RNSTCIHHHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-TLVDLFDIDS 113
I VG G T W DNW G L+ L +
Sbjct: 461 ARPFVICE------------------------VGSGITARFWQDNWTGHGPLIHLTGLTG 496
Query: 114 QQL--NMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCI----RDKLIWKH 167
QL + +R+ ++N +W S P + LL S + + + D +WK
Sbjct: 497 PQLVGLSITSVVRDAIRNDDWWIASS-RSRNPVILLLKSLLPPVGNLVDCEHDDSYLWKV 555
Query: 168 SN---NGELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMN 224
+ + + + D ++ + V+W K +W + P A + W N+L T D L +
Sbjct: 556 GDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRS 615
Query: 225 KGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWF 260
G +P+ C LCN + ET HLF C F+ +W++F
Sbjct: 616 WGLIVPAECVLCNLVDETRDHLFFACRFSSRIWTFF 651
>UniRef100_Q9XIH8 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 87.0 bits (214), Expect = 1e-15
Identities = 56/184 (30%), Positives = 85/184 (45%), Gaps = 11/184 (5%)
Query: 87 VGDGDTINCWLDNWCGE-TLVDLFDIDSQQLNMLPKK--LRNYMQNFNWCFPDDILSLFP 143
+G G+T + W DNW G+ L+DL + + +P +R+ ++ NW S P
Sbjct: 41 IGSGETASFWQDNWTGQGPLIDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSS-RSRNP 99
Query: 144 DMRLLASKVTIPKHCIR----DKLIWKHSNNGELTLQDAYKFKKTNFPK---VNWAKHIW 196
+ LL S + + I D WK ++ + A K P V W K +W
Sbjct: 100 SIALLKSVLPSSESMIECQHDDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVW 159
Query: 197 SPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNL 256
D P A + W +L T D L G N+P++C LCN + ET HLF +C F+ +
Sbjct: 160 FKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEI 219
Query: 257 WSWF 260
WS+F
Sbjct: 220 WSFF 223
>UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 86.7 bits (213), Expect = 2e-15
Identities = 68/277 (24%), Positives = 112/277 (39%), Gaps = 37/277 (13%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQ-SEEQWAQVLRSRVIRNSTC--I 60
++W VC DEGGLG+RSL N +K+ W + S W + + ++RN++ +
Sbjct: 860 ISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEV 919
Query: 61 HHHVYSSIWSGAKT-EFQNLIDN-SNWLVGDGDTINCWLDNWCG----------ETLVDL 108
V W K +++ + S VG+G + W DNW L+DL
Sbjct: 920 KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDL 979
Query: 109 -----FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPKHCIRDKL 163
++ N ++ RN + N +D L D R DK+
Sbjct: 980 GISRRMTVEEAWTNRRQRRHRNDVYNVI----EDALKKSWDTRTETE----------DKV 1025
Query: 164 IWKHSNN---GELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDD 220
+W+ ++ + +D + ++ +V W K IW P + W +LPT D
Sbjct: 1026 LWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGD 1085
Query: 221 NLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLW 257
++N + + C C ET HLF CSF +W
Sbjct: 1086 RMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIW 1122
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 85.5 bits (210), Expect = 4e-15
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 42/284 (14%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIH- 61
++W+++ D+GG G + L C N A K W + Q + +++V +SR NS +
Sbjct: 817 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSA 876
Query: 62 ------HHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGE-------TLVDL 108
+ + SI G + Q L ++G+G W D W +
Sbjct: 877 TRGSRPSYAWRSILFGRELLMQGL----RTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRF 932
Query: 109 FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFP--DMRLLASKVTIPKHCIRDKLIWK 166
++D + ++ RN+ N + LFP D+ ++ + P D W
Sbjct: 933 INVDLKVSQLIDPTSRNWNLNM-------LRDLFPWKDVEIILKQR--PLFFKEDSFCWL 983
Query: 167 HSNNGELTLQDAYKFKKTNF-----------PKVNWA-KHIWSPDIPPSKALLVWRFMLN 214
HS+NG +++ Y+F P VN IW+ P + +W+ +
Sbjct: 984 HSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHG 1043
Query: 215 KLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWS 258
+P +D L +G C +C+ +ET +H+ EC A +W+
Sbjct: 1044 AIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWA 1087
>UniRef100_Q9SY58 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 84.7 bits (208), Expect = 6e-15
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 87 VGDGDTINCWLDNWCGE-TLVDLFDIDSQQLNMLPKK--LRNYMQNFNWCFPDD-----I 138
VG G T + W DNW L+ L L LP +R+ +++ W +
Sbjct: 873 VGSGVTASFWHDNWTDHGPLLHLTGPAGPLLAGLPLNSVVRDALRDDTWRISSSRSRNPV 932
Query: 139 LSLFPDMRLLASKVTIPKHCIRDKLIWK---HSNNGELTLQDAYKFKKTNFPKVNWAKHI 195
++L R+L S ++ D +WK H+ + + D + + + + V W K +
Sbjct: 933 ITLL--QRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAV 990
Query: 196 WSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALN 255
W D P +A + W N+L T D L G ++P C LCN++ E+ HLF C F+
Sbjct: 991 WFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSE 1050
Query: 256 LWSWFAGILN 265
+WS+F LN
Sbjct: 1051 IWSFFMRALN 1060
>UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sativa]
Length = 387
Score = 84.0 bits (206), Expect = 1e-14
Identities = 89/343 (25%), Positives = 135/343 (38%), Gaps = 32/343 (9%)
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQWAQVLRSRVIRN----STC 59
+AW +VC +GGLGI+ L N A +K+ LF WA + S+ +N S
Sbjct: 36 IAWDQVCRSKKQGGLGIKHLQTQNTALLVKMLHRLFTQPSPWASWI-SKEHQNYPLGSID 94
Query: 60 IHHHVYSSIWSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCGETLVDLFDI---DSQQL 116
+ H W L ++ L GDG IN W D W L F + +L
Sbjct: 95 LGPH-----WRSLIALLPLLRKHTKMLPGDGRHINFWHDVWLDGQLSAKFQALYTHTVKL 149
Query: 117 NMLPKKLRNYMQNFNWCFPDDILSL----FPDMRLLASKVTIPKHCIRDKLIWK-HSNNG 171
N L + + ++F F I ++ L VT+ D+++ + NG
Sbjct: 150 NCLLSSVLH--EDFRCFFVPRITPTAQQQMMQLQYLLQNVTLSTE--PDEIVCNLKTKNG 205
Query: 172 ELTLQDAYKFKKTNFPKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPS 231
++ + Y+ + F IW PP W N+LPT NL K
Sbjct: 206 LISSSELYRSEMATFETWPPWSAIWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTP 265
Query: 232 MCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNGSWNPQCKTV 291
C LCN E T+H+FL C A W+ ++ I S DL N+ P
Sbjct: 266 TCELCNANLEDTYHIFLRCPMAAAFWN----MIQIIPEISSLSDLHNLELSGPLP----T 317
Query: 292 IIASLINIIN--SIWYARNQRRFQNIKIHWRSSIASIISNASL 332
++S ++ +W RN+ FQN+ I S + +A L
Sbjct: 318 FLSSTFFLLCCWRLWNHRNEVVFQNLPPSISRLINSCLQDAKL 360
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 83.6 bits (205), Expect = 1e-14
Identities = 72/296 (24%), Positives = 107/296 (35%), Gaps = 56/296 (18%)
Query: 1 MVTVAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQW-AQVLRSRVIRNSTC 59
M V+W K+ +EGGLG R + K+ W + + ++VL + S+
Sbjct: 777 MAWVSWDKLTLPINEGGLGFREI-------EAKLSWRILKEPHSLLSRVLLGKYCNTSSF 829
Query: 60 IHHHVYSSI----WSGAKTEFQNLIDNSNWLVGDGDTINCWLDNWCG------------E 103
+ S W G L W +G GD+IN W + W E
Sbjct: 830 MDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTE 889
Query: 104 TLVDL-------FDIDSQQLNMLPKKLRNYMQNFNWCFPDDILSLFPDMRLLASKVTIPK 156
T DL D+ S + + K L Y K+TI
Sbjct: 890 TNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQIR-------------------KITINA 930
Query: 157 HCIRDKLIWKHSNNGELTLQDAYKFKKTN-FPK----VNWAKHIWSPDIPPSKALLVWRF 211
++D L+W +GE T + Y K N FP NW K+IW P +W+
Sbjct: 931 LPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKA 990
Query: 212 MLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCS 267
M LP + L + C C +E++ HL L C +A +W + N S
Sbjct: 991 MKGALPVGEALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVWELAPVLFNPS 1045
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.324 0.136 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 991,448,868
Number of Sequences: 2790947
Number of extensions: 42962211
Number of successful extensions: 117926
Number of sequences better than 10.0: 277
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 117312
Number of HSP's gapped (non-prelim): 411
length of query: 535
length of database: 848,049,833
effective HSP length: 132
effective length of query: 403
effective length of database: 479,644,829
effective search space: 193296866087
effective search space used: 193296866087
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC137553.12