BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136840.1 + phase: 0 /pseudo
         (1308 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]        120  4e-25
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr...   119  5e-25
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]                      118  1e-24
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]                       118  1e-24
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]        117  2e-24
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]                 114  2e-23
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]                 114  2e-23
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip...   113  3e-23
UniRef100_Q7X970 BZIP-like protein [Oryza sativa]                     112  6e-23
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]              111  1e-22
UniRef100_P93295 Hypothetical mitochondrial protein AtMg00310 [A...   111  1e-22
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]        110  3e-22
UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]        106  4e-21
UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcrip...   104  2e-20
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]       103  3e-20
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip...   103  3e-20
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]               102  6e-20
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A...   101  1e-19
UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa]        101  1e-19
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip...   101  1e-19

>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
          Length = 1557

 Score =  120 bits (300), Expect = 4e-25
 Identities = 50/129 (38%), Positives = 83/129 (63%), Gaps = 1/129 (0%)

Query: 811  VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
            +P   CE + S+   FWWG+++G+RK HW     + K+K +GG+GF+  +  N A+L++Q
Sbjct: 1179 LPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQ 1238

Query: 871  GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
             WR++ N + L +  LK +Y+P G  +  S G N S  W++I H   E++ K  +WR+G+
Sbjct: 1239 AWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHG-LELVKKGIIWRIGN 1297

Query: 931  GRNIRVWKD 939
            GR++RVW+D
Sbjct: 1298 GRSVRVWQD 1306


>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score =  119 bits (299), Expect = 5e-25
 Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 8/165 (4%)

Query: 776 FGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGE 834
           F +SL +GGKEI+  L+     + +++     +    P   C ++ S ++ FWW +   +
Sbjct: 628 FSKSLSQGGKEIM--LKAVAMAMPVFAMSCFKL----PKTTCTNLASAMADFWWSANDHQ 681

Query: 835 RKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRG 894
           RKIHW+  +++C  K+ GG+GFR     N A+L+KQ WR+L   + L +  +K RYFP G
Sbjct: 682 RKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVG 741

Query: 895 DFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
           +FL + VG  PS+ WRSI+H + +++ +  V RVG+G++IRVW D
Sbjct: 742 EFLDSDVGSRPSFGWRSILHGR-DLLCRGLVKRVGNGKSIRVWID 785


>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  118 bits (296), Expect = 1e-24
 Identities = 68/176 (38%), Positives = 101/176 (56%), Gaps = 8/176 (4%)

Query: 765 EDKTSSVQNIGFGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMI 823
           +D+     ++ F R L +GGKE+L  L+     + +++     +    P   CE++ES +
Sbjct: 732 KDRLKEKLDVWFTRCLSQGGKEVL--LKSVALAMPVFAMSCFKL----PITTCENLESAM 785

Query: 824 SRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS 883
           + FWW S    RKIHW   + +C  K  GG+GFR  +  N A+L+KQ WR+LH  + LLS
Sbjct: 786 ASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 845

Query: 884 *CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
             LK RYF   DFL A++   PS+ WRSI+  + E++ K    RVGDG ++ VW D
Sbjct: 846 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGR-ELLSKGLQKRVGDGASLFVWID 900


>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  118 bits (296), Expect = 1e-24
 Identities = 68/176 (38%), Positives = 101/176 (56%), Gaps = 8/176 (4%)

Query: 765 EDKTSSVQNIGFGRSL-RGGKEILCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMI 823
           +D+     ++ F R L +GGKE+L  L+     + +++     +    P   CE++ES +
Sbjct: 735 KDRLKEKLDVWFTRCLSQGGKEVL--LKSVALAMPVFAMSCFKL----PITTCENLESAM 788

Query: 824 SRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS 883
           + FWW S    RKIHW   + +C  K  GG+GFR  +  N A+L+KQ WR+LH  + LLS
Sbjct: 789 ASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLS 848

Query: 884 *CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
             LK RYF   DFL A++   PS+ WRSI+  + E++ K    RVGDG ++ VW D
Sbjct: 849 RLLKSRYFDATDFLDAALSQRPSFGWRSILFGR-ELLSKGLQKRVGDGASLFVWID 903


>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
          Length = 1509

 Score =  117 bits (294), Expect = 2e-24
 Identities = 51/124 (41%), Positives = 77/124 (61%), Gaps = 1/124 (0%)

Query: 816  CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRIL 875
            C+ I  MI+++WW +++ + K+HW+  +++   K +GG+GFR     NLAML+KQGWR++
Sbjct: 1016 CDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLI 1075

Query: 876  HNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
             + + L S  L+ +YFP GD  +     N SYTWRSI      V+    +WRVGDG  I 
Sbjct: 1076 QDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKG-LRVLQNGMIWRVGDGSKIN 1134

Query: 936  VWKD 939
            +W D
Sbjct: 1135 IWAD 1138


>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
          Length = 1694

 Score =  114 bits (286), Expect = 2e-23
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 13/161 (8%)

Query: 782  GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGERKIH 838
            GGKEIL    L    +Y + L+          +P   CE +  ++  FWWG+++G R+ H
Sbjct: 1400 GGKEILIKAVLQAMPVYVMGLFK---------LPESVCEELTKLVRNFWWGAEKGMRRTH 1450

Query: 839  WIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRGDFLK 898
            W   D +   K  GGMGFR F+  N A+L++Q WR+L   + L +  LK  Y+P G  + 
Sbjct: 1451 WKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLID 1510

Query: 899  ASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
             S G N S  WR+I +   E++ K  +WR+G+G+++R+W+D
Sbjct: 1511 TSFGGNASPGWRAIEYG-LELLKKGIIWRIGNGKSVRLWRD 1550


>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
          Length = 1888

 Score =  114 bits (286), Expect = 2e-23
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 13/161 (8%)

Query: 782  GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGERKIH 838
            GGKEIL    L    +Y + L+          +P   CE +  ++  FWWG+++G R+ H
Sbjct: 1357 GGKEILIKAVLQAMPVYVMGLFK---------LPESVCEELTKLVRNFWWGAEKGMRRTH 1407

Query: 839  WIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRGDFLK 898
            W   D +   K  GGMGFR F+  N A+L++Q WR+L   + L +  LK  Y+P G  + 
Sbjct: 1408 WKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLID 1467

Query: 899  ASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
             S G N S  WR+I +   E++ K  +WR+G+G+++R+W+D
Sbjct: 1468 TSFGGNASPGWRAIEYG-LELLKKGIIWRIGNGKSVRLWRD 1507


>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1382

 Score =  113 bits (283), Expect = 3e-23
 Identities = 54/130 (41%), Positives = 82/130 (62%), Gaps = 1/130 (0%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P   CE +++ I+  WWG + G++K+HW     +   K +GGMGFR F   N AML +Q
Sbjct: 825 IPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQ 884

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR+L + + L S  LKGRYFP   F +A+   +PS+TWRS++  + E++ K   W VGD
Sbjct: 885 CWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGR-ELLAKGVRWGVGD 943

Query: 931 GRNIRVWKDN 940
           G+ I+++ DN
Sbjct: 944 GKTIKIFSDN 953


>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
          Length = 2367

 Score =  112 bits (281), Expect = 6e-23
 Identities = 49/130 (37%), Positives = 78/130 (59%), Gaps = 1/130 (0%)

Query: 811  VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
            +P    + +  +   FWW S  G+RK HW   D + K K +GG+GFR ++  N A+L++Q
Sbjct: 1544 LPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQ 1603

Query: 871  GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
             WR++   + L +  LK +YFP G  +  S G N S  WRSI +   +++ K  +WRVG+
Sbjct: 1604 AWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYG-LDLLKKGIIWRVGN 1662

Query: 931  GRNIRVWKDN 940
            G +IR+W+D+
Sbjct: 1663 GNSIRIWRDS 1672


>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
          Length = 1205

 Score =  111 bits (278), Expect = 1e-22
 Identities = 45/130 (34%), Positives = 80/130 (60%), Gaps = 1/130 (0%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P   CE  E ++  FWWG ++GE+K+HWI  +++   K +GG+GFR  +  N A+L++Q
Sbjct: 798 MPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQ 857

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR++ + + L +  LK +Y+P G     +     S TW+ I+H   E++ K  +WR+GD
Sbjct: 858 AWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHG-LELLKKGLIWRIGD 916

Query: 931 GRNIRVWKDN 940
           G   ++W+++
Sbjct: 917 GSKTKIWRNH 926


>UniRef100_P93295 Hypothetical mitochondrial protein AtMg00310 [Arabidopsis thaliana]
          Length = 154

 Score =  111 bits (278), Expect = 1e-22
 Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 2/125 (1%)

Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKV-GGMGFRTFKELNLAMLSKQGWRI 874
           C+ + S ++ FWW S + +RKI W+   ++CK+K+  GG+GFR     N A+L+KQ +RI
Sbjct: 18  CKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRI 77

Query: 875 LHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNI 934
           +H    LLS  L+ RYFP    ++ SVG  PSY WRSI+H + E++ +  +  +GDG + 
Sbjct: 78  IHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGR-ELLSRGLLRTIGDGIHT 136

Query: 935 RVWKD 939
           +VW D
Sbjct: 137 KVWLD 141


>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
          Length = 791

 Score =  110 bits (275), Expect = 3e-22
 Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 1/129 (0%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P    + +  +   FWW S  G+RK HW   D + K K +GG+GFR +   N A+L++Q
Sbjct: 220 LPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQ 279

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR++   + L +  LK +YFP G  +  S G N S  WRSI +   +++ K  +WRVG+
Sbjct: 280 AWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYG-LDLLKKGIIWRVGN 338

Query: 931 GRNIRVWKD 939
           G +IR+W+D
Sbjct: 339 GNSIRIWRD 347


>UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]
          Length = 1833

 Score =  106 bits (265), Expect = 4e-21
 Identities = 44/123 (35%), Positives = 73/123 (58%), Gaps = 1/123 (0%)

Query: 816 CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRIL 875
           C+    M+  FWWG   GERK+HWI  +++   K  GG+GFR  K  N A+L++Q WR+L
Sbjct: 727 CDDYTRMVRNFWWGHDNGERKVHWIAWEKILYPKSHGGLGFRDMKCFNQALLARQAWRLL 786

Query: 876 HNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
            + + L +   K +Y+P G+ +  +     S  W+ I H   +++ +  +WRVG+G NI+
Sbjct: 787 TSPDSLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQHG-LDLLKQGTIWRVGNGHNIK 845

Query: 936 VWK 938
           +W+
Sbjct: 846 IWR 848


>UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1138

 Score =  104 bits (260), Expect = 2e-20
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 14/179 (7%)

Query: 765 EDKTSSVQNIGFGRSLR-GGKEILC---LLQQEMY*LKLWSKKSLPM**VVPNG*CEHIE 820
           +DK  S  +  F R+L  GGKEIL     +  ++Y +  +               C+++ 
Sbjct: 545 KDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTT---------CKNLT 595

Query: 821 SMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEEL 880
           S +S FWW + + +RK HW+  +++C  K+ GG+GFR  +  N A+L+KQ WRIL     
Sbjct: 596 SAMSDFWWNALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSF 655

Query: 881 LLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKD 939
           L +   K RYF   +FL+A +G  PSY   SI+  + E++ K     VG+G+++ VW D
Sbjct: 656 LFARFFKSRYFDDEEFLEADLGVRPSYACCSILFGR-ELLAKGLRKEVGNGKSLNVWMD 713


>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
          Length = 1936

 Score =  103 bits (258), Expect = 3e-20
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 1/128 (0%)

Query: 812  PNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQG 871
            P+   + +  M   FWWG+  G R+ HW   D + K K  GG+GFR +K  N A+L++Q 
Sbjct: 1451 PDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQA 1510

Query: 872  WRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDG 931
            WR++     L +  LK +YFP G     +   N S TW  I +   +++ K  +WR+G+G
Sbjct: 1511 WRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYG-LDLLKKGIIWRIGNG 1569

Query: 932  RNIRVWKD 939
             ++R+W+D
Sbjct: 1570 NSVRIWRD 1577


>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  103 bits (257), Expect = 3e-20
 Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 3/130 (2%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P   C+ IES+++ FWW +K+  R +HW     + + K VGG+GF+  +  N+A+L KQ
Sbjct: 810 IPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQ 869

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRV-G 929
            WR++  ++ L++   K RYF + D L A +G  PS+ W+SI  A  +V+ K G+  V G
Sbjct: 870 LWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEA--QVLIKQGIRAVIG 927

Query: 930 DGRNIRVWKD 939
           +G  I VW D
Sbjct: 928 NGETINVWTD 937


>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
          Length = 1711

 Score =  102 bits (255), Expect = 6e-20
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 812  PNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQG 871
            P   C+ +  M   FWW +  G R+ HW   D + K K  GG+GFR +K  N A+L+ Q 
Sbjct: 1295 PESVCDDLTKMTRNFWWVADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLAPQA 1354

Query: 872  WRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDG 931
            WR++     L +  LK +YFP G     +   N S TW  I +   +++ K  +WR+G+G
Sbjct: 1355 WRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYG-LDLLKKGIIWRIGNG 1413

Query: 932  RNIRVWKD 939
             ++R+W+D
Sbjct: 1414 NSVRIWRD 1421


>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  101 bits (252), Expect = 1e-19
 Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P      + S +++FWW S    R +HW+  D++C +K  GG+GFR   + N A+L+KQ
Sbjct: 594 LPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQ 653

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR++   + L +   KGRYF + + L +   ++PSY WRS++ A+  ++ K  + RVG 
Sbjct: 654 LWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISAR-SLVYKGLIKRVGS 712

Query: 931 GRNIRVWKD 939
           G +I VW D
Sbjct: 713 GASISVWND 721


>UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa]
          Length = 1185

 Score =  101 bits (252), Expect = 1e-19
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P   C+ I   I+RFWWG  +  R+IHW     +C  K+ GG+GFR     N AML+KQ
Sbjct: 628 IPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQ 687

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR L + + L +  ++ +Y+P G+ L+A      SY W+SI+        K  +WR+GD
Sbjct: 688 IWRFLCDPDSLCARVMRCKYYPDGNILRARPKKGSSYAWQSILSG--SECFKGYIWRIGD 745

Query: 931 GRNIRVWKDN 940
           G  + +W+D+
Sbjct: 746 GSQVNIWEDS 755


>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1319

 Score =  101 bits (252), Expect = 1e-19
 Identities = 49/129 (37%), Positives = 74/129 (56%), Gaps = 1/129 (0%)

Query: 811 VPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQ 870
           +P G C  + S++  FWW S +   KIHWI   ++   K +GG GF+  +  N A+L+KQ
Sbjct: 762 LPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQ 821

Query: 871 GWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGD 930
            WR+  + + ++S   K RYF   DFL A  G  PSYTWRSI++ + E+++      +G+
Sbjct: 822 AWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGR-ELLNGGLKRLIGN 880

Query: 931 GRNIRVWKD 939
           G    VW D
Sbjct: 881 GEQTNVWID 889


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.358    0.160    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,758,860,953
Number of Sequences: 2790947
Number of extensions: 62769902
Number of successful extensions: 240073
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 239868
Number of HSP's gapped (non-prelim): 167
length of query: 1308
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1169
effective length of database: 460,108,200
effective search space: 537866485800
effective search space used: 537866485800
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 81 (35.8 bits)