BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135848.1 + phase: 0
(64 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XHI6 Putative bHLH131 transcription factor [Arabidop... 53 2e-06
UniRef100_Q9SZK7 Hypothetical protein F20D10.190 [Arabidopsis th... 53 2e-06
UniRef100_Q9S7Y1 Putative DNA-binding protein; 36199-34606 [Arab... 40 0.012
UniRef100_O80674 Hypothetical protein At2g41130 [Arabidopsis tha... 39 0.035
UniRef100_Q6ZJC8 BHLH protein family-like [Oryza sativa] 39 0.035
UniRef100_Q6ZA99 DNA-binding protein-like [Oryza sativa] 36 0.22
UniRef100_Q9LET0 Putative HLH DNA binding protein [Arabidopsis t... 33 2.5
UniRef100_Q6ESL3 DNA binding protein-like [Oryza sativa] 32 3.2
UniRef100_Q69MD0 BHLH-like protein [Oryza sativa] 32 3.2
UniRef100_Q9LS08 Putative HLH DNA-binding protein [Arabidopsis t... 32 5.5
>UniRef100_Q7XHI6 Putative bHLH131 transcription factor [Arabidopsis thaliana]
Length = 256
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVE-NESLGMLKSTLKVVMHKPS 56
MS ++ ++ ++KAK V+ E++TVGGRT+ L+VQGV NE L LK +LK+V++ S
Sbjct: 182 MSEVAESMKAVKAKAVRAEIMTVGGRTKCALFVQGVNGNEGLVKLKKSLKLVVNGKS 238
>UniRef100_Q9SZK7 Hypothetical protein F20D10.190 [Arabidopsis thaliana]
Length = 1496
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVE-NESLGMLKSTLKVVMHKPS 56
MS ++ ++ ++KAK V+ E++TVGGRT+ L+VQGV NE L LK +LK+V++ S
Sbjct: 1422 MSEVAESMKAVKAKAVRAEIMTVGGRTKCALFVQGVNGNEGLVKLKKSLKLVVNGKS 1478
>UniRef100_Q9S7Y1 Putative DNA-binding protein; 36199-34606 [Arabidopsis thaliana]
Length = 368
Score = 40.4 bits (93), Expect = 0.012
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 6 RALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENES--------LGMLKSTLKVVMHK 54
+ L +M+ K +K E+ TVGGR ++VL+V G E+ +G ++ LK VM K
Sbjct: 277 KTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESSGEEVEEEYCIGTIEEALKAVMEK 333
>UniRef100_O80674 Hypothetical protein At2g41130 [Arabidopsis thaliana]
Length = 253
Score = 38.9 bits (89), Expect = 0.035
Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 4/60 (6%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVEN----ESLGMLKSTLKVVMHKPS 56
+ + L S+ K ++ EMVT+GGRTRSVL V + ES+ L++ LK ++ + S
Sbjct: 166 LPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLERSS 225
>UniRef100_Q6ZJC8 BHLH protein family-like [Oryza sativa]
Length = 223
Score = 38.9 bits (89), Expect = 0.035
Identities = 24/61 (39%), Positives = 38/61 (61%), Gaps = 9/61 (14%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGV------ENE---SLGMLKSTLKVV 51
MS + RA+ S+ A+ V+ E+ TVGGRTRSVL + V +N+ +L L++ L+ V
Sbjct: 132 MSDLGRAVRSVSARPVRAEVATVGGRTRSVLELDVVVASDAADNDRAVALSALRAALRTV 191
Query: 52 M 52
+
Sbjct: 192 L 192
>UniRef100_Q6ZA99 DNA-binding protein-like [Oryza sativa]
Length = 345
Score = 36.2 bits (82), Expect = 0.22
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 4 ISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENE 39
I+RAL +++ + + E+ T+GGR RSVL + VE E
Sbjct: 231 IARALAALRLRARRAEIATLGGRVRSVLLIAAVEEE 266
>UniRef100_Q9LET0 Putative HLH DNA binding protein [Arabidopsis thaliana]
Length = 230
Score = 32.7 bits (73), Expect = 2.5
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVEN----ESLGMLKSTLKVVMHKPS 56
+ + L S++ + + +M TVGGRTR+VL V + +S+ L++ LK ++ + S
Sbjct: 143 LKDLMETLKSLQMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLERSS 202
>UniRef100_Q6ESL3 DNA binding protein-like [Oryza sativa]
Length = 363
Score = 32.3 bits (72), Expect = 3.2
Identities = 14/36 (38%), Positives = 24/36 (65%)
Query: 4 ISRALLSMKAKVVKVEMVTVGGRTRSVLWVQGVENE 39
I+RAL +++ + + E+ T+GGR RSVL + E +
Sbjct: 230 IARALAALRLRARRAEITTLGGRVRSVLLITADEQQ 265
>UniRef100_Q69MD0 BHLH-like protein [Oryza sativa]
Length = 215
Score = 32.3 bits (72), Expect = 3.2
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVL 31
MS + A S+ A+ V+ E+ TVGGRTRS L
Sbjct: 132 MSELGDAERSVSARAVRAEIATVGGRTRSDL 162
>UniRef100_Q9LS08 Putative HLH DNA-binding protein [Arabidopsis thaliana]
Length = 344
Score = 31.6 bits (70), Expect = 5.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 1 MSSISRALLSMKAKVVKVEMVTVGGRTRSVLWV 33
M + AL S++ + +K E+ TVGGR +++L++
Sbjct: 228 MHDVINALKSLRLRTLKAEIATVGGRVKNILFL 260
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.319 0.129 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,336,449
Number of Sequences: 2790947
Number of extensions: 1764710
Number of successful extensions: 3705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3696
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 848,049,833
effective HSP length: 40
effective length of query: 24
effective length of database: 736,411,953
effective search space: 17673886872
effective search space used: 17673886872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135848.1