BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135801.4 + phase: 0
(61 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6ETN4 Putative small nuclear ribonucleoprotein polype... 112 2e-24
UniRef100_Q9SUM2 Probable small nuclear ribonucleoprotein F [Ara... 110 1e-23
UniRef100_UPI0000430827 UPI0000430827 UniRef100 entry 96 2e-19
UniRef100_Q6IBQ1 SNRPF protein [Homo sapiens] 96 3e-19
UniRef100_UPI00001E3716 UPI00001E3716 UniRef100 entry 95 4e-19
UniRef100_UPI00001CFCB0 UPI00001CFCB0 UniRef100 entry 95 4e-19
UniRef100_UPI0000368AB1 UPI0000368AB1 UniRef100 entry 95 4e-19
UniRef100_UPI0000368AB0 UPI0000368AB0 UniRef100 entry 95 4e-19
UniRef100_UPI00003A974C UPI00003A974C UniRef100 entry 95 4e-19
UniRef100_Q6NZQ3 Hypothetical protein [Mus musculus] 95 4e-19
UniRef100_Q6P4I0 Hypothetical protein [Homo sapiens] 95 4e-19
UniRef100_P62306 Small nuclear ribonucleoprotein F [Homo sapiens] 95 4e-19
UniRef100_Q6DRC1 Small nuclear ribonucleoprotein F [Brachydanio ... 94 7e-19
UniRef100_UPI00000140C0 UPI00000140C0 UniRef100 entry 93 2e-18
UniRef100_UPI0000318DA4 UPI0000318DA4 UniRef100 entry 93 2e-18
UniRef100_Q24297 Small nuclear ribonucleoprotein F [Drosophila m... 91 6e-18
UniRef100_Q7PR85 ENSANGP00000002801 [Anopheles gambiae str. PEST] 89 4e-17
UniRef100_Q61E25 Hypothetical protein CBG12250 [Caenorhabditis b... 87 1e-16
UniRef100_P34659 Probable small nuclear ribonucleoprotein F [Cae... 86 3e-16
UniRef100_UPI00001C85D3 UPI00001C85D3 UniRef100 entry 82 3e-15
>UniRef100_Q6ETN4 Putative small nuclear ribonucleoprotein polypeptide F [Oryza
sativa]
Length = 86
Score = 112 bits (281), Expect = 2e-24
Identities = 53/58 (91%), Positives = 56/58 (96%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDA 58
MEYKGYLVSVDSYMNLQLANTEEYI+G F+GNLGEILIRCNNVLY+RGVPED EIEDA
Sbjct: 28 MEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDTEIEDA 85
>UniRef100_Q9SUM2 Probable small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 88
Score = 110 bits (274), Expect = 1e-23
Identities = 51/61 (83%), Positives = 55/61 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
MEYKG+L SVDSYMNLQL NTEEYI+G TGNLGEILIRCNNVLY+RGVPEDEE+EDA
Sbjct: 28 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 87
Query: 61 D 61
D
Sbjct: 88 D 88
>UniRef100_UPI0000430827 UPI0000430827 UniRef100 entry
Length = 88
Score = 96.3 bits (238), Expect = 2e-19
Identities = 44/59 (74%), Positives = 52/59 (87%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
EYKGYLVSVD YMNLQLANTEE+I+GN TGNLGE+LIRCNNV+Y+RGV E++E + D
Sbjct: 30 EYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNVMYIRGVEEEDEEGEMKD 88
>UniRef100_Q6IBQ1 SNRPF protein [Homo sapiens]
Length = 86
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE + D
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDGEMRD 86
>UniRef100_UPI00001E3716 UPI00001E3716 UniRef100 entry
Length = 143
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 84 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 137
>UniRef100_UPI00001CFCB0 UPI00001CFCB0 UniRef100 entry
Length = 98
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 39 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 92
>UniRef100_UPI0000368AB1 UPI0000368AB1 UniRef100 entry
Length = 125
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 66 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 119
>UniRef100_UPI0000368AB0 UPI0000368AB0 UniRef100 entry
Length = 133
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 74 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 127
>UniRef100_UPI00003A974C UPI00003A974C UniRef100 entry
Length = 110
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 51 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 104
>UniRef100_Q6NZQ3 Hypothetical protein [Mus musculus]
Length = 112
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 53 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 106
>UniRef100_Q6P4I0 Hypothetical protein [Homo sapiens]
Length = 117
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 58 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 111
>UniRef100_P62306 Small nuclear ribonucleoprotein F [Homo sapiens]
Length = 86
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/54 (79%), Positives = 50/54 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEYI+G +G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80
>UniRef100_Q6DRC1 Small nuclear ribonucleoprotein F [Brachydanio rerio]
Length = 86
Score = 94.4 bits (233), Expect = 7e-19
Identities = 42/54 (77%), Positives = 49/54 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEEY++G G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRCNNVLYIRGVEEEEE 80
>UniRef100_UPI00000140C0 UPI00000140C0 UniRef100 entry
Length = 86
Score = 92.8 bits (229), Expect = 2e-18
Identities = 41/54 (75%), Positives = 49/54 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEE+++G G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRCNNVLYIRGVEEEEE 80
>UniRef100_UPI0000318DA4 UPI0000318DA4 UniRef100 entry
Length = 87
Score = 92.8 bits (229), Expect = 2e-18
Identities = 41/54 (75%), Positives = 49/54 (89%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKGYLVSVD YMN+QLANTEE+++G G+LGE+LIRCNNVLY+RGV E+EE
Sbjct: 28 MEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRCNNVLYIRGVEEEEE 81
>UniRef100_Q24297 Small nuclear ribonucleoprotein F [Drosophila melanogaster]
Length = 88
Score = 91.3 bits (225), Expect = 6e-18
Identities = 41/59 (69%), Positives = 51/59 (85%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
EYKG+LVSVD YMN+QLANTEE IEG+ TGNLGE+LIRCNNVLY++G+ +D+E + D
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD 88
>UniRef100_Q7PR85 ENSANGP00000002801 [Anopheles gambiae str. PEST]
Length = 88
Score = 88.6 bits (218), Expect = 4e-17
Identities = 38/59 (64%), Positives = 51/59 (86%)
Query: 2 EYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
EYKG+LVSVD YMN+QLANTEE+++G TG+LGE+LIRCNNVLY+RG+ +++E + D
Sbjct: 30 EYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLGEVLIRCNNVLYIRGIDDEDEEGEMRD 88
>UniRef100_Q61E25 Hypothetical protein CBG12250 [Caenorhabditis briggsae]
Length = 86
Score = 86.7 bits (213), Expect = 1e-16
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRG 48
MEYKG LV+VDSYMNLQLAN EEYI+GN TGNLGEILIRCNNVLY+ G
Sbjct: 29 MEYKGILVAVDSYMNLQLANAEEYIDGNNTGNLGEILIRCNNVLYVGG 76
>UniRef100_P34659 Probable small nuclear ribonucleoprotein F [Caenorhabditis
elegans]
Length = 85
Score = 85.9 bits (211), Expect = 3e-16
Identities = 41/54 (75%), Positives = 46/54 (84%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYKG LV+VDSYMNLQLA+ EEYI+GN GNLGEILIRCNNVLY+ GV + E
Sbjct: 29 MEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGVDGENE 82
>UniRef100_UPI00001C85D3 UPI00001C85D3 UniRef100 entry
Length = 90
Score = 82.4 bits (202), Expect = 3e-15
Identities = 37/54 (68%), Positives = 47/54 (86%)
Query: 1 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEE 54
MEYK YLVS+D YM+ QLANTEEYI+G +G+LGE+LIR +NVLY+RG+ E+EE
Sbjct: 31 MEYKDYLVSIDGYMDTQLANTEEYIDGALSGHLGEVLIRYSNVLYVRGIEEEEE 84
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.313 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,371,823
Number of Sequences: 2790947
Number of extensions: 3520631
Number of successful extensions: 5432
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5332
Number of HSP's gapped (non-prelim): 128
length of query: 61
length of database: 848,049,833
effective HSP length: 37
effective length of query: 24
effective length of database: 744,784,794
effective search space: 17874835056
effective search space used: 17874835056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135801.4