BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135566.1 + phase: 0 /pseudo
(437 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris] 150 5e-35
UniRef100_Q6L975 GAG-POL [Vitis vinifera] 121 4e-26
UniRef100_Q9AXC3 Hypothetical protein [Antirrhinum hispanicum] 111 4e-23
UniRef100_Q5W6D7 Putative polyprotein [Oryza sativa] 107 7e-22
UniRef100_Q8W5I2 Putative gag-pol [Oryza sativa] 103 1e-20
UniRef100_Q94I49 Putative retroelement [Oryza sativa] 102 2e-20
UniRef100_Q9ARZ4 Putative polyprotein [Oryza sativa] 102 3e-20
UniRef100_Q7XXG4 OSJNBb0089K24.6 protein [Oryza sativa] 100 8e-20
UniRef100_Q7XQT5 OSJNBa0043L09.12 protein [Oryza sativa] 100 8e-20
UniRef100_Q6AUG2 Putative polyprotein [Oryza sativa] 100 1e-19
UniRef100_Q850U0 Putative polyprotein [Oryza sativa] 100 1e-19
UniRef100_Q6AV09 Putative polyprotein [Oryza sativa] 100 1e-19
UniRef100_Q7XSL9 OSJNBa0035O13.7 protein [Oryza sativa] 100 1e-19
UniRef100_Q75LT9 Putative reverse transcriptase [Oryza sativa] 99 2e-19
UniRef100_Q94HB8 Putative retroelement [Oryza sativa] 99 2e-19
UniRef100_Q93Y90 Putative gag-pol [Oryza sativa] 99 2e-19
UniRef100_Q9ZNW4 Polyprotein [Sorghum bicolor] 99 3e-19
UniRef100_Q8S5Q8 Putative retroelement [Oryza sativa] 99 3e-19
UniRef100_Q851J0 Putative GAG-POL [Oryza sativa] 98 4e-19
UniRef100_Q8W2U3 Putative polyprotein [Oryza sativa] 98 5e-19
>UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 150 bits (380), Expect = 5e-35
Identities = 113/437 (25%), Positives = 198/437 (44%), Gaps = 77/437 (17%)
Query: 22 IQQVQQQEKTDSHHGDLDEPEPQPFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFN 81
+Q +Q K + + ++ P+ PF+ I P+PD ++ + +DG DP EH+ +F
Sbjct: 189 VQHTRQSAKPVTPN-EVANPKGHPFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFR 247
Query: 82 TRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVL 141
T+M++Y ++ CK+ + + L W+ LP SI + + KFT Q++ +R +
Sbjct: 248 TQMTLYTTDRTVWCKVFPTSLREGPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTS 307
Query: 142 STSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPAD 201
S SL NV+Q ESLR ++ RF+ + + N N E+ + + + G+F ES+ ++P
Sbjct: 308 SMSLLNVKQERGESLRTFMNRFSKVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPC 367
Query: 202 SMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQN 261
+M+E+ RA +++ EE + A+ NS G R PP T ER++
Sbjct: 368 NMDELRTRATKFMQIEEHIDYHRKTYAENTDNSKGIR-----PP-----TIPTDRERHRP 417
Query: 262 RYVP--EHFTPLNTRPERILKEVFESKIIPPPPFSRARVMGQDKDAWCKYHLVQGHNTDD 319
P ++TPL ++L E + ++IP S+ D C+YH GH T+
Sbjct: 418 NRGPRFHNYTPLIVPRGKVLDEALQIELIPTLRPSQT-PPNADTSKRCQYHRNYGHTTEG 476
Query: 320 CVHLKREIEKLLLSGKLRGYAK---------ERRHNERQED------------------- 351
C LK +IE+L+ +G LR + K +R H+ R+
Sbjct: 477 CQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRRKR 536
Query: 352 -----------KPNPEQK------------------------HTLHTISGGFAGGGESSN 376
+PE++ ++ I+GGFAGGG S++
Sbjct: 537 SESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNS 596
Query: 377 SMKKYARQVMLLGDGPS 393
+ KK+ R + + P+
Sbjct: 597 ARKKHLRAIQSVHSTPT 613
>UniRef100_Q6L975 GAG-POL [Vitis vinifera]
Length = 549
Score = 121 bits (303), Expect = 4e-26
Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 18/335 (5%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
PF + I N P F P T+DG DP +H+ + M++ D+L CK+ +
Sbjct: 5 PFCSHIINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQG 64
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQF-SGTRHRKVLSTSLFNVRQGPSESLREYLARF 163
AL W+ LP S+ ++D+ + F Q+ RH++ +ST L N++ +ESLRE++ RF
Sbjct: 65 QALSWFHRLPPNSVGNFRDLSEAFVGQYLCSARHKQNIST-LQNIKMQDNESLREFVKRF 123
Query: 164 NDSTIKVSNPNQEVFVGAFQNGLWAG-QFNESIAQKPADSMEEIIARAECYVKGEESNAE 222
+ ++V + + + F+ + G F ES+A+KP +M+++ RA Y E+
Sbjct: 124 GQAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKPPTTMDDLFRRANKYSMLEDDVRA 183
Query: 223 KKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQ---NRYVPEHFTPLNTRPERIL 279
+ SG + PP+R KP +R Q +R TPL+ E++L
Sbjct: 184 ATQQVLVAGRPSGSNTERNTKPPDR-----PKPSDRRQEGPSRPKMPPLTPLSISYEKLL 238
Query: 280 KEVFESKIIPPPPFSRARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGY 339
+ P +D+ C +H GH T+ C + +E+L+ +G L+ Y
Sbjct: 239 PMIQGLSDFKWPRPIATDPSTRDRSRRCAFHKDHGHTTETCRSFQYLVERLIKAGHLKQY 298
Query: 340 AKE-------RRHNERQEDKPNPEQKHTLHTISGG 367
+ +HN + K ++ I+GG
Sbjct: 299 LRTDTGGRDVSQHNNPGAPRAPVATKAVINYINGG 333
>UniRef100_Q9AXC3 Hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 111 bits (278), Expect = 4e-23
Identities = 95/365 (26%), Positives = 156/365 (42%), Gaps = 26/365 (7%)
Query: 9 LEQNEALLASVETIQQVQQQEKTDSHHGDLDEPEP-QPFSAKIWNAPVPDNFKPPHLPTF 67
++ N ++ T + + Q G +E E PF+ I +P + + + +
Sbjct: 119 MDNNNQQFINMVTELKREVQALNRDRDGTAEEDEMGSPFAPHILAPEIPVSMRLSNPVVY 178
Query: 68 DG---RGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPCFSIMGYQDM 124
G DP +H+ F M + D C + T A W+ LP SI + ++
Sbjct: 179 TGDRNARDPRDHINQFLAVMDILSTPDHALCWIFRSTLTGRAQAWFSQLPRGSIRSFDEL 238
Query: 125 IKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEVFVGAFQN 184
+ F +QF+ R L + + ESLREY+ RF ++ I V + +
Sbjct: 239 RELFVRQFACNRRYPKTIGHLMTMVEAEGESLREYMRRFANTVIDVRHVGPHILSEFVAQ 298
Query: 185 GLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVP 244
G + +F S+ +PA S+EE++ RAE Y+ E++ K G G E R+
Sbjct: 299 GTRSVEFANSLVGRPARSLEELMHRAERYMLQEDTRLAK-------LGIQGHEDRSR--- 348
Query: 245 PNRDRGTFKKPYERNQNRYV-PEHFTPLNTRPERILKEVFESKIIPPPPFSRARVMGQDK 303
NR RG + RY+ P TPL ++ + ++ + PP +R +
Sbjct: 349 -NR-RGDNTHGRQDMVRRYLEPLPLTPLKISNTEVMNIMGGNQDLRCPPQARNFEAMRHT 406
Query: 304 DAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAK--------ERRHNERQEDKPNP 355
WC +H GH T++ LK EIE+LL G LR + K ER R+E +P
Sbjct: 407 GKWCLFHRSWGHRTENYDQLKIEIERLLKLGYLRRFIKRMEVYPRNERPGERREESRPRE 466
Query: 356 E-QKH 359
+ Q+H
Sbjct: 467 QAQEH 471
>UniRef100_Q5W6D7 Putative polyprotein [Oryza sativa]
Length = 1185
Score = 107 bits (267), Expect = 7e-22
Identities = 88/359 (24%), Positives = 145/359 (39%), Gaps = 32/359 (8%)
Query: 32 DSHHGDLDEPEPQPFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVAD 91
D H + F+ + + P+ F+P + +DG DP E + V++T G D
Sbjct: 296 DRQHPTAPSAGCRAFNRSLRDVRWPERFRPGAIEKYDGSTDPEEFLQVYSTVPYAAGADD 355
Query: 92 SLKCKLLAGTFADAALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQG 151
+ L +A W M LP +SI + D+ ++F F GT R ++ L + Q
Sbjct: 356 NALANYLPTALKGSARSWLMHLPPYSISSWADLWQQFVGNFQGTYKRHMIEDDLHALTQN 415
Query: 152 PSESLREYLARFNDSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAE 211
P ESLR+Y+ RFND + + AF+ G+ +A + + +
Sbjct: 416 PGESLRDYVRRFNDCRNTIPEITDASVIRAFKTGVRDRYTTLELATRQITTTRRLFE--- 472
Query: 212 CYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPL 271
V ++A+ R ++ +GGE++ P +D +P ++ +
Sbjct: 473 --VVDRCAHADDALRRKNDKPKAGGEKK-----PAKDA---PEPSKKKSGK--------- 513
Query: 272 NTRPERILKEVFESKIIPPPPFSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKL 330
+ + EVF S+ PP G D K WC H H+ +DC+ K+ +EK
Sbjct: 514 -SGKRKAQAEVFASEYERPP--KHPDPQGSDTKRIWCPIHKSDRHSLEDCLIFKKSLEKQ 570
Query: 331 LLSGK---LRGYAKERRHNERQEDKPNPEQK-HTLHTISGGFAGGGESSNSMKKYARQV 385
L+ K +R K + D P+ H LH G A S KK R+V
Sbjct: 571 LVLKKGKQVRVVEKAVEATTQDSDSAYPDSDLHVLHIFGGSTA--YSSKREYKKVEREV 627
>UniRef100_Q8W5I2 Putative gag-pol [Oryza sativa]
Length = 698
Score = 103 bits (257), Expect = 1e-20
Identities = 82/340 (24%), Positives = 134/340 (39%), Gaps = 30/340 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 212 PERFRPGAIKKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 271
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ FN+ +
Sbjct: 272 YSISSWADLWQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRHFNECRNTIPEITD 331
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E + ++A R ++ +G
Sbjct: 332 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----QCAHANDALRRKNDKPKTG 386
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P + KK +N R + E + E P P S
Sbjct: 387 GEKK----PATDTSESSKKKNRKNGKR---------KAQAEVLAAEYANPPKRPDPQSSN 433
Query: 296 ARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK---LRGYAKERRHNERQEDK 352
K +WC H H+ +DC+ K+ +EK + K +R K + D
Sbjct: 434 T------KKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRVVEKNEETAPHELDS 487
Query: 353 PNPEQK-HTLHTISGGFAGGGESSNSMKKYARQVMLLGDG 391
P+ H H SG S KK R+V L G
Sbjct: 488 AYPDYDFHVSHIFSGSTT--YSSKREYKKVEREVYLTWQG 525
>UniRef100_Q94I49 Putative retroelement [Oryza sativa]
Length = 1291
Score = 102 bits (255), Expect = 2e-20
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 26/341 (7%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPDNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDSKRRQ 228
Query: 225 AREAK-ERGNSGGERRNHYV----PPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERIL 279
A +A+ ++ + + V PP + + R T R +R
Sbjct: 229 AIQAEYDKASITAAQAQAQVQVAEPPPLSVRQSQPAIQGQPPRQSQAPITWRKFRTDRAG 288
Query: 280 KEVFESKII---------------PPPPFSRARVMGQDKDAWCKYHLVQGHNTDDCVHLK 324
K V + + P + R KD +C +H H T+ C ++
Sbjct: 289 KAVMAVEEVQALRKEFDAQQASNHQQPAHKKVR-----KDLYCAFHGRSSHTTEQCRNI- 342
Query: 325 REIEKLLLSGKLRGYAKERRHNERQEDKPNPEQKHTLHTIS 365
R+ +G E QE P EQ+ +H +S
Sbjct: 343 RQRGNAQNPRPQQGTTVEAPREAVQEQTPPAEQRQDVHQLS 383
>UniRef100_Q9ARZ4 Putative polyprotein [Oryza sativa]
Length = 1579
Score = 102 bits (253), Expect = 3e-20
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++ T
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPCYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLTLDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++++++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPQTLKQLLRIIDGFARGEEDSKRRQ 228
Query: 225 AREAK 229
A +A+
Sbjct: 229 AIQAE 233
>UniRef100_Q7XXG4 OSJNBb0089K24.6 protein [Oryza sativa]
Length = 1400
Score = 100 bits (249), Expect = 8e-20
Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 26/285 (9%)
Query: 46 FSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADA 105
FS + + P+ F+P + +DG DP E + V++T + G D+ L
Sbjct: 429 FSRSLRDVRWPERFRPRAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGY 488
Query: 106 ALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFND 165
A W M LP +SI + D+ ++F F GT R + L + Q ESLREY+ RFN+
Sbjct: 489 ARSWLMHLPPYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNE 548
Query: 166 STIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKA 225
+ + A ++G+ + +A + + + E ++A+
Sbjct: 549 CRNTIPEITDASVIRALKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHADDAL 603
Query: 226 REAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFES 285
R ++ +GGE++ P + KK +N R + EV +
Sbjct: 604 RRKNDKPKTGGEKK----PATDASESSKKKNRKNGKR--------------KAQAEVLAA 645
Query: 286 KIIPPPPFSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK 329
+ + PP R D K AWC H H+ +DC+ K+ +EK
Sbjct: 646 EYVNPP--KRPDPQSSDTKKAWCPIHKTDRHSLEDCLVFKKSLEK 688
>UniRef100_Q7XQT5 OSJNBa0043L09.12 protein [Oryza sativa]
Length = 1120
Score = 100 bits (249), Expect = 8e-20
Identities = 70/281 (24%), Positives = 117/281 (40%), Gaps = 24/281 (8%)
Query: 55 VPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLP 114
+ DN PP L +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 276 IADNPPPPALEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLP 335
Query: 115 CFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPN 174
+SI + D+ ++F F GT R + L + Q ESLREY+ FN+ +
Sbjct: 336 PYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVQCFNECKNTIPEIT 395
Query: 175 QEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNS 234
+ AF++G+ + +A + + + E ++A+ R ++ +
Sbjct: 396 DASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHADDALRRKNDKPKT 450
Query: 235 GGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFS 294
GGE++ P + KK +N R + EV ++ PP
Sbjct: 451 GGEKK----PATDAPESSKKKNRKNGKR--------------KAQAEVLAAEYANPPKHP 492
Query: 295 RARVMGQDKDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK 335
+ K AWC H H+ +DC+ K+ +EK + S K
Sbjct: 493 DPQ-SSDTKKAWCPIHKTDRHSLEDCLVFKKSLEKHIASEK 532
>UniRef100_Q6AUG2 Putative polyprotein [Oryza sativa]
Length = 1194
Score = 100 bits (248), Expect = 1e-19
Identities = 77/329 (23%), Positives = 136/329 (40%), Gaps = 27/329 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 444 PERFRPGAIEKYDGSTDPKEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 503
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ R N+ +
Sbjct: 504 YSISSWADLRQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRRLNECRNTIPEITD 563
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E + + A+ R +R +G
Sbjct: 564 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----QCAYADDALRRKNDRPKTG 618
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P + KK +N R + EV ++ PP R
Sbjct: 619 GEKK----PATDTSESSKKKNRKNGKR--------------KAQAEVLAAEYANPP--KR 658
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNERQEDKPN 354
D K +WC H H+ +DC+ K+ +EK + K + + E +P+
Sbjct: 659 LDPQSSDTKKSWCLIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRVVEMNEETAPHEPD 718
Query: 355 PEQKHTLHTISGGFAGGGESSNSMKKYAR 383
+ +S F GG + +S ++Y +
Sbjct: 719 SAYPDSDLHVSHIF-GGSTTYSSKREYKK 746
>UniRef100_Q850U0 Putative polyprotein [Oryza sativa]
Length = 1535
Score = 99.8 bits (247), Expect = 1e-19
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 306 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 365
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 366 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 425
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 426 QARCQVQDIIEASVINAASAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSKRRQ 485
Query: 225 AREAK 229
A +A+
Sbjct: 486 AIQAE 490
>UniRef100_Q6AV09 Putative polyprotein [Oryza sativa]
Length = 1551
Score = 99.8 bits (247), Expect = 1e-19
Identities = 78/334 (23%), Positives = 133/334 (39%), Gaps = 30/334 (8%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ +P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 389 PERLRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 448
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ RFN+ +
Sbjct: 449 YSISSWIDLWQQFVANFQGTYKRHAIEDDLHTLTQNSGESLREYVRRFNECRNTIPEITD 508
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R + +G
Sbjct: 509 AFVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHVDDALRRKNNKPKTG 563
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE++ P D K R + + EV ++ PP R
Sbjct: 564 GEKK-----PAVDASESSKKKNRKNGK-------------RKAQAEVLAAEYANPP--KR 603
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNE---RQED 351
G D K +WC H H+ +DC+ K+ +EK + K + ++ E + D
Sbjct: 604 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVCVVEKNEETPPHESD 663
Query: 352 KPNPEQKHTLHTISGGFAGGGESSNSMKKYARQV 385
P+ + I GG + S KK R+V
Sbjct: 664 SAYPDSDLHVSHIFGG-STTYSSKREYKKVEREV 696
>UniRef100_Q7XSL9 OSJNBa0035O13.7 protein [Oryza sativa]
Length = 1421
Score = 99.8 bits (247), Expect = 1e-19
Identities = 75/306 (24%), Positives = 131/306 (42%), Gaps = 34/306 (11%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L + +A W M LP
Sbjct: 106 PERFRPGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTAWKGSARSWLMHLPS 165
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + ESLR Y+ RFN+ +
Sbjct: 166 YSISSWSDLWQQFVANFQGTNKRHAIEDDLHALTHNSGESLRGYVRRFNECRNTIPEITD 225
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + + E ++ + R ++ +G
Sbjct: 226 ASVICAFKSGVRDHYTTQVLATRRITTTQRLFEIVE-----RCAHVDDALRRKNDKPKTG 280
Query: 236 GERRNHYVPPNRDRG-TFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFS 294
GE++ P D + KK +N R + EV ++ PP
Sbjct: 281 GEKK-----PTADASESSKKKNHKNGKR--------------KAQAEVLAAEYANPP--K 319
Query: 295 RARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK-LRGYAKERRHNERQ--- 349
R G D K +WC H H+ +DC+ K+ +EK + K RG A + + +E++
Sbjct: 320 RPDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRGAAPKMKWSEQRIEF 379
Query: 350 --EDKP 353
ED P
Sbjct: 380 SAEDHP 385
>UniRef100_Q75LT9 Putative reverse transcriptase [Oryza sativa]
Length = 1445
Score = 99.4 bits (246), Expect = 2e-19
Identities = 81/336 (24%), Positives = 139/336 (41%), Gaps = 40/336 (11%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P F+ + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 180 PKRFRSGAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLMHLPP 239
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L Q P ESLR+Y+ RFN+ +
Sbjct: 240 YSISLWADLWQQFVANFQGTYKRHAIEDDLHASTQNPGESLRDYVRRFNECRNTIPEITD 299
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADS---MEEIIARAECYVKGEESNAEKKAREAKERG 232
+ AF++G+ + +A + + + EI+ R ++A+ R ++
Sbjct: 300 ASVICAFKSGVRDRYTTQELATRRVTTTRRLFEIVDRC--------AHADDAVRRKNDKP 351
Query: 233 NSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPP 292
+GGE++ P +D K R + + +V ++ PPP
Sbjct: 352 KTGGEKK-----PAKDAPKSSKKKNRKSGK-------------RKAQAKVLATEYADPPP 393
Query: 293 FSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK--LLLSGK-LRGYAKERRHNER 348
R G D K WC H H+ +DC+ K+ + K L GK +R K+ +
Sbjct: 394 -KRPDPQGSDVKKIWCLIHKSDRHSLEDCLVFKKSLAKHMALEKGKRIRVVEKDAEAVTQ 452
Query: 349 QEDKPNPEQK-HTLHTISGGFAGGGESSNSMKKYAR 383
+ D P+ H H GG + +S ++Y +
Sbjct: 453 ESDSAYPDSDLHVSHIF-----GGSTAYSSKREYKK 483
>UniRef100_Q94HB8 Putative retroelement [Oryza sativa]
Length = 2079
Score = 99.4 bits (246), Expect = 2e-19
Identities = 73/302 (24%), Positives = 124/302 (40%), Gaps = 30/302 (9%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG DP E + V++T + G D+ L +A W M LP
Sbjct: 575 PERFRPGAIEKYDGSIDPEEFLQVYSTVLYAAGADDNAVANYLPTALKGSARSWLMHLPP 634
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + L + Q ESLREY+ RFN+ +
Sbjct: 635 YSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITD 694
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R ++ +G
Sbjct: 695 ASVIRAFKSGVRDRYTTQELATRHITTTRRLFQIVE-----RCAHVDDALRRKNDKPKTG 749
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE+++ D K R + + EV ++ PP R
Sbjct: 750 GEKKS-----AADTSESSKKKNRKNGK-------------RKAQAEVLAAEYANPP--RR 789
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGKLRGYAKERRHNERQEDKPN 354
G D K +WC H H+ +DC+ K+ +EK + K K R E+ E+ P
Sbjct: 790 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEK----GKRVRVVEKNEESPP 845
Query: 355 PE 356
E
Sbjct: 846 HE 847
>UniRef100_Q93Y90 Putative gag-pol [Oryza sativa]
Length = 1519
Score = 99.0 bits (245), Expect = 2e-19
Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 29/316 (9%)
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADAALRWYMSLPC 115
P+ F+P + +DG +P E + V++T + G D+ L+ +A W M LP
Sbjct: 292 PERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDNALANYLSTALKGSARSWLMHLPP 351
Query: 116 FSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFNDSTIKVSNPNQ 175
+SI + D+ ++F F GT R + +L + Q ESLREY+ RFN+ +
Sbjct: 352 YSISSWADLWQQFVANFQGTYKRHAIEDNLHALTQNSGESLREYVRRFNECRNTIPEITD 411
Query: 176 EVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSG 235
+ AF++G+ + +A + + + E ++ + R ++ +G
Sbjct: 412 ASVIRAFKSGVRDRYTTQELATRRITTTRRLFEIVE-----RCAHVDDALRRKNDKPKTG 466
Query: 236 GERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSR 295
GE+++ T + +NR + EV ++ PP R
Sbjct: 467 GEKKS---------ATDASESSKKKNR---------KNGKRKAQAEVLAAEYANPP--KR 506
Query: 296 ARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEKLLLSGK---LRGYAKERRHNERQED 351
G D K +WC H H+ +DC+ K+ +EK + K +R K + D
Sbjct: 507 PDPQGSDTKKSWCPIHKTDRHSLEDCLVFKKSLEKHMAFEKGKRVRIVEKNEETAPHESD 566
Query: 352 KPNPEQKHTLHTISGG 367
P+ + I GG
Sbjct: 567 YAYPDSDLHISHIFGG 582
>UniRef100_Q9ZNW4 Polyprotein [Sorghum bicolor]
Length = 1877
Score = 98.6 bits (244), Expect = 3e-19
Identities = 83/305 (27%), Positives = 130/305 (42%), Gaps = 33/305 (10%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S + +P P +KP LP F G+ DP + + F ++ G +++ K
Sbjct: 159 PLSEGLQTSPWPTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEG 218
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
AL WY L SI ++++ K F G + ST LF RQ E+LREY RF
Sbjct: 219 DALAWYSMLRPGSIYSWENLRDKILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFV 278
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKG-------- 216
+ + +EV + A GL G F +A++ SM E+ E Y +
Sbjct: 279 QTKARAPGVPKEVAIEAAIKGLRIGPFAAHLAREKPASMHELYHEFEKYCRSDNDYRKRL 338
Query: 217 EESNAEKKA---REAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNT 273
E+ N++K+ R ++++ S ERR P R+ G + N P++ P N
Sbjct: 339 EDQNSQKRQSNDRNSQKKDLSRDERR-----PQREAG------GQMMNIEQPKNDRPENN 387
Query: 274 RPERILKEVFESKIIPPPPFSRARVMGQDKD-------AWCKYH-LVQGHNTDDCVHLKR 325
RP E S+ +P R G K+ +C +H +GH+T DC K
Sbjct: 388 RPP---VEARSSERVPNQAGRGGRNAGWRKNQSQRPRKQYCFFHGEEKGHSTRDCPDAKE 444
Query: 326 EIEKL 330
E++
Sbjct: 445 TQERI 449
>UniRef100_Q8S5Q8 Putative retroelement [Oryza sativa]
Length = 1292
Score = 98.6 bits (244), Expect = 3e-19
Identities = 51/185 (27%), Positives = 90/185 (48%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + ++ K K++
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 108
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +LP SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 109 IARSWYFNLPDNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ +V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDSKRRQ 228
Query: 225 AREAK 229
A +A+
Sbjct: 229 AIQAE 233
>UniRef100_Q851J0 Putative GAG-POL [Oryza sativa]
Length = 831
Score = 98.2 bits (243), Expect = 4e-19
Identities = 77/318 (24%), Positives = 134/318 (41%), Gaps = 38/318 (11%)
Query: 46 FSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFADA 105
FS + + P+ F+P + +DG +P E + V++T + G DS L +
Sbjct: 337 FSRSLRDVRWPERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDSALVNYLPTALKGS 396
Query: 106 ALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFND 165
A W M LP +SI + D+ ++F F GT R + L + Q P ESL +Y+ RFN+
Sbjct: 397 ARSWLMHLPPYSISLWADLWQQFVANFQGTYKRHAIEDDLHALTQNPGESLSDYVWRFNE 456
Query: 166 STIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADS---MEEIIARAECYVKGEESNAE 222
+ + AF++G+ + +A + + + EI+ R ++ +
Sbjct: 457 CRNTIPEITDASVIRAFKSGVRDRYTTQELATRRVTTTRRLFEIVDRC--------AHTD 508
Query: 223 KKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRYVPEHFTPLNTRPERILKEV 282
R ++ +GGE++ P +D K R + + EV
Sbjct: 509 DALRRNNDKPKTGGEKK-----PAKDAPESSKKKNRKSGK-------------RKAQAEV 550
Query: 283 FESKIIPPPPFSRARVMGQD-KDAWCKYHLVQGHNTDDCVHLKREIEK-LLLSGKLRGYA 340
++ PP R G D K WC H H+ +DC+ K+ + K + L RG A
Sbjct: 551 LTTEYADPP--KRLDPQGSDTKKTWCPIHKSDRHSLEDCLVFKKSLAKHMALEKGKRGAA 608
Query: 341 KERRHNER-----QEDKP 353
+ + +E+ +ED P
Sbjct: 609 PKMKWSEQKIEFSEEDHP 626
>UniRef100_Q8W2U3 Putative polyprotein [Oryza sativa]
Length = 1931
Score = 97.8 bits (242), Expect = 5e-19
Identities = 51/185 (27%), Positives = 89/185 (47%)
Query: 45 PFSAKIWNAPVPDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVYGVADSLKCKLLAGTFAD 104
P S I P+P FK P +P + G DP E ++++ + + V ++ K K++
Sbjct: 496 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEVAHGDENTKAKVIHLALDG 555
Query: 105 AALRWYMSLPCFSIMGYQDMIKKFTQQFSGTRHRKVLSTSLFNVRQGPSESLREYLARFN 164
A WY +L SI ++ + F F GT L +RQ P ES+REY+ RF+
Sbjct: 556 IARSWYFNLLANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 615
Query: 165 DSTIKVSNPNQEVFVGAFQNGLWAGQFNESIAQKPADSMEEIIARAECYVKGEESNAEKK 224
+ V + + + A GL G+ IA K ++E ++ + + +GEE + ++
Sbjct: 616 QARCHVQDITEASVINATSAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSKRRQ 675
Query: 225 AREAK 229
A +A+
Sbjct: 676 AIQAE 680
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 791,921,167
Number of Sequences: 2790947
Number of extensions: 36346958
Number of successful extensions: 97127
Number of sequences better than 10.0: 554
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 96023
Number of HSP's gapped (non-prelim): 928
length of query: 437
length of database: 848,049,833
effective HSP length: 130
effective length of query: 307
effective length of database: 485,226,723
effective search space: 148964603961
effective search space used: 148964603961
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC135566.1