BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135464.5 - phase: 0 /pseudo
         (1087 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vul...   266  3e-69
UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa]               184  2e-44
UniRef100_O65244 F21E10.5 protein [Arabidopsis thaliana]              179  4e-43
UniRef100_Q8LK27 Putative AP endonuclease/reverse transcriptase ...   177  1e-42
UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcrip...   174  1e-41
UniRef100_Q5W6F4 Hypothetical protein OSJNBb0006B22.8 [Oryza sat...   173  2e-41
UniRef100_Q7X970 BZIP-like protein [Oryza sativa]                     173  3e-41
UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa]        172  5e-41
UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]        171  9e-41
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip...   171  9e-41
UniRef100_Q7Y1P7 Putative reverse transcriptase [Oryza sativa]        171  1e-40
UniRef100_Q8S5Q3 Putative non-LTR retroelement reverse transcrip...   169  3e-40
UniRef100_Q9SA04 F28K20.4 protein [Arabidopsis thaliana]              169  3e-40
UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]              168  9e-40
UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like...   167  1e-39
UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]                  167  2e-39
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip...   165  8e-39
UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa]        164  1e-38
UniRef100_O64473 Putative non-LTR retroelement reverse transcrip...   160  2e-37
UniRef100_Q9C6L3 Hypothetical protein F2J7.11 [Arabidopsis thali...   159  3e-37

>UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vulgaris]
          Length = 507

 Score =  266 bits (679), Expect = 3e-69
 Identities = 145/416 (34%), Positives = 230/416 (54%), Gaps = 7/416 (1%)

Query: 26  FSDFIVDNSLIDLSLCGRRFTWFKGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGLSD 85
           F +FI +  LI++S     FTWF+G     S++DR  +  EW   +P+     L R  SD
Sbjct: 34  FQNFINNMGLIEISPIKGFFTWFRGQSK--SKLDRLFVQPEWLTSFPSLKLNILKRSPSD 91

Query: 86  HCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFIKT 145
           HCPL      +NWGP+P R L CW   P   + + +              + +KL+ +K 
Sbjct: 92  HCPLLAFSSHQNWGPKPFRFLNCWLTHPQCMKIISEIWTKNHNSS-----VPDKLRTLKE 146

Query: 146 ALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSS 205
           ALK+W+      I   I   +++    D+  +   L  +E+ E      +L +  + + S
Sbjct: 147 ALKQWNQKEFGIIDDNIKHCEEKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSES 206

Query: 206 ILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRD 265
                SR  W+K+GD+N++YFH++ + RR +N +  +  +   +     I+   +++F+ 
Sbjct: 207 YWALNSRARWIKEGDSNTRYFHTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQH 266

Query: 266 HFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFI 325
            FA   ++R   + L F  LS ++ S L  PF+ +E+  AV  CD+ K+PGPDG NF FI
Sbjct: 267 IFAEEFSTRPVFNGLNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFI 326

Query: 326 KEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKI 385
           K  W+ +K+D+ + + DF  +G L  G N+ FIALI K   P+  N+FRPIS+VG LYKI
Sbjct: 327 KSSWEVIKKDIYKIVEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKI 386

Query: 386 LSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKRN*CCSKL 441
           ++K+LA RL+ V+  +I   Q++F+K RQILDG+LIA+E++D  R+ K      KL
Sbjct: 387 IAKILARRLQRVMDHLIGPYQSSFIKGRQILDGVLIASELIDSCRRMKNEAVVLKL 442


>UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa]
          Length = 1324

 Score =  184 bits (466), Expect = 2e-44
 Identities = 134/436 (30%), Positives = 200/436 (45%), Gaps = 5/436 (1%)

Query: 1    DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGN-AMSRID 59
            DFN +  A ++ +S     +     F   I    L ++ L  R+FTW     +  M R+D
Sbjct: 597  DFNMIYRACDKSNSN--INLRRMRRFRAAINHCELKEIHLQNRKFTWTNERRHPTMVRLD 654

Query: 60   RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
            RF  +E W L + +     L  G SDHCPL LS  +    PR  +    W  LPG+   V
Sbjct: 655  RFFCNENWDLAFGHHILHTLSSGTSDHCPLLLSNPQGPQRPRTFKFENFWTKLPGFRTEV 714

Query: 120  KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
            +   +           L +KL     ALK+W  G  S +  K           D   +  
Sbjct: 715  QLAWERTSTHHEPLHRLADKLSHTALALKKWARGICSEVKLKFHLALDVIQRLDVAQENR 774

Query: 180  DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
            DL+  E     G+   L   + +  +   Q SR+  +K+GDAN+KYFH  ++ R+RRN I
Sbjct: 775  DLTQAEFRLRLGLKRRLLGYAAIERARKKQASRITNIKEGDANTKYFHRKVNARKRRNHI 834

Query: 240  ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
              L   +            +  HFR     R   R    N P   L+ TD + L +PFS 
Sbjct: 835  FRLRRQNGWAVTHAEKEGVIADHFRQ-VMGRPEPRTSDLNWPSLDLAPTDLTRLEEPFSE 893

Query: 300  DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGI-NTTFI 358
             E++ A+ +    K+PGPDG    F K  WD ++ DV+   +  H    +   + N+  +
Sbjct: 894  AEIRKAINEMPGDKAPGPDGFTGKFFKSCWDIIQVDVIAAFNALHNMRSVHLNLLNSANV 953

Query: 359  ALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDG 418
             LI K D  + INDFRPISL+    K+ SKVLA RL+ ++  +IS +Q+AF++ R I D 
Sbjct: 954  VLIPKKDGAEGINDFRPISLIHGFAKLSSKVLAIRLRPLMQSLISPNQSAFIRGRSIHDN 1013

Query: 419  ILIANEVVDEARKNKR 434
             +    +V    K +R
Sbjct: 1014 FMYVRNMVRRYHKTRR 1029


>UniRef100_O65244 F21E10.5 protein [Arabidopsis thaliana]
          Length = 928

 Score =  179 bits (454), Expect = 4e-43
 Identities = 138/463 (29%), Positives = 226/463 (48%), Gaps = 33/463 (7%)

Query: 1   DFNAVRYAEERKSSRG----ISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNAM- 55
           DFN +   EE  +SR      +G+ D   F   +   S+ DL+  G  FTW     N + 
Sbjct: 30  DFNEILDMEEHSNSRENPVTTTGMRD---FQMAVNHCSITDLAYHGPLFTWSNKRENDLI 86

Query: 56  -SRIDRFLLSEEWCLQWPNSFQVALLRGLSDH--CPLQLSVDEENW--GPRPSRMLKCWQ 110
             ++DR L+++ W   +P S+ V    G SDH  C + L+V       G RP + +    
Sbjct: 87  AKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCRINLNVGAGAVVKGKRPFKFVNVIT 146

Query: 111 DLPGYNQFVK---DKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGK----ID 163
           ++  +   V+   ++ ++  +     F   +KLK +K  L+        N+  +     +
Sbjct: 147 EMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFE 206

Query: 164 SLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANS 223
           +L ++QA       + + S   + E          ++ +    L Q+S+L WL  GD N+
Sbjct: 207 TLCQKQAM-----KMANPSPSSMQEENEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNN 261

Query: 224 KYFHSVLSGRRRRNSIISLLA-DSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGI----- 277
           K FH  +  R  +NSI  ++  D ++    + I+     HFR+          GI     
Sbjct: 262 KAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIAVEEL 321

Query: 278 -DNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDV 336
            D LP++C S +D   LT   SA+E+   V+   + KSPGPDG    F K  W+ +  + 
Sbjct: 322 QDLLPYRC-SDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEF 380

Query: 337 MRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKL 396
           +  I  F   G L +GIN+T +ALI K    + + D+RPIS    LYK++SK++ANRLKL
Sbjct: 381 ILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKL 440

Query: 397 VLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKRN*CCS 439
           VL K I  +Q+AFVKDR +++ +L+A E+V +  K+  +  C+
Sbjct: 441 VLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCA 483


>UniRef100_Q8LK27 Putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  177 bits (450), Expect = 1e-42
 Identities = 120/415 (28%), Positives = 209/415 (49%), Gaps = 20/415 (4%)

Query: 26  FSDFIVDNSLIDLSLCGRRFTWFKGDGN--AMSRIDRFLLSEEWCLQWPNSFQVALLRGL 83
           F + ++ +++ DL   G  +TW+    N     +IDR L+++ W +  P S+        
Sbjct: 167 FRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEF 226

Query: 84  SDHCPLQLSVDEENWGP-RPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKF 142
           SDHCP  +++  ++ G  +P ++       P + + ++        +G   F L +K KF
Sbjct: 227 SDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKF 286

Query: 143 IKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLH----S 198
           +K  ++ ++  H S +  ++      QA  + K    +L A     L G+  + H     
Sbjct: 287 LKGTIRTFNREHYSGLEKRVV-----QAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAE 341

Query: 199 LSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNL-VEGVQPIRN 257
           L+      L Q+SR+LWLK GD+N+ +FH +++ RR  N I  LL  +   +E    ++ 
Sbjct: 342 LALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQT 401

Query: 258 AVLSHFRDHFAARH--TSRVGIDNLP----FKCLSHTDGSGLTKPFSADEVKSAVWDCDS 311
             +  F++ F +     S  GI  +     FKC  +T    L    S  ++KS  +   S
Sbjct: 402 HCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQL-LEAEVSEADIKSEFFALPS 460

Query: 312 YKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRIN 371
            KSPGPDG    F K+ W  +   ++  + +F R+G+L    N+T + ++ K  +  RI 
Sbjct: 461 NKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRIT 520

Query: 372 DFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVV 426
           +FRPIS   ++YK++SK+LA RL+ +L   IS SQ+AFVK R + + +L+A E+V
Sbjct: 521 EFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELV 575


>UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1614

 Score =  174 bits (442), Expect = 1e-41
 Identities = 123/442 (27%), Positives = 215/442 (47%), Gaps = 17/442 (3%)

Query: 1    DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
            DFN  ++A E+ +S      +D   F+ FI D  L ++ + G +FTW  K        +D
Sbjct: 760  DFNLYKFASEKSNSNIDVRCMDM--FNKFISDLDLREVHIIGPKFTWTNKQYCPTQEVLD 817

Query: 60   RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGP-RPSRMLKCWQDLPGYNQF 118
            R L+S++W  ++PNS   ++LR  SDH PL L   E      R  R    W  + G+   
Sbjct: 818  RILVSDDWDDRYPNSLISSVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAVEGFKDL 877

Query: 119  VKDKLK----SFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
            V  K      S+ +E W      +K   ++  L  W I   S       SL+K+  + D 
Sbjct: 878  VGKKFPDRDGSYILEFWN-----KKQVEMRRFLTGWGINKQSEDRRAKLSLQKKLEEIDS 932

Query: 175  KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRR 234
            K    +L+ADE      +   L  +  +      ++    WL +GD N++Y+H + +GR+
Sbjct: 933  KAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRIANGRK 992

Query: 235  RRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDN---LPFKCLSHTDGS 291
            +R +I SL+     +   + +++ ++ +++  F +  +S + +     +   CL   D +
Sbjct: 993  KRCTITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESSSSIHLSQGVWVDSLCLKEEDKN 1052

Query: 292  GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
             L +PF+ +E+   + +     + GPDG +  F + FW +L+ D+   +   +      +
Sbjct: 1053 TLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLMLYNEELDLK 1112

Query: 352  GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
             +N   I+LI K  +P  I  FRPI ++   +K +SK + NRL  +   +IS +QTAF+ 
Sbjct: 1113 RLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISPTQTAFIP 1172

Query: 412  DRQILDGILIANEVVDEA-RKN 432
             R IL+G +I +EV+ E  RKN
Sbjct: 1173 GRFILEGCVIIHEVLHEMNRKN 1194


>UniRef100_Q5W6F4 Hypothetical protein OSJNBb0006B22.8 [Oryza sativa]
          Length = 1237

 Score =  173 bits (439), Expect = 2e-41
 Identities = 126/451 (27%), Positives = 219/451 (47%), Gaps = 33/451 (7%)

Query: 1    DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLID------LSLCGRRFTWFKGDGN- 53
            DFN +R  +E+ +        +Y     F+  N++ID      + + GR FTW     N 
Sbjct: 781  DFNILRSHDEKNND-------NYDDRWPFLF-NAIIDGLCLREIQMSGRNFTWANNLANP 832

Query: 54   AMSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWG--PRPSRMLKCWQD 111
               ++DR L+S EW  ++P S  VAL R +SDH PL L+ +  +        +    W  
Sbjct: 833  TYEKLDRVLMSTEWEQKFPLSSVVALNRDISDHTPLPLNTNSSSLSNAQHSFKFELGWLL 892

Query: 112  LPGYNQFVKDKLKSFQ-----IEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLK 166
              G+ + VK+   S       +E W     + K++ ++  L+ W   H+S +  K     
Sbjct: 893  RDGFVEMVKEIWSSVDEGNTAMERW-----QAKIRRLRQHLRGWS-KHSSGLYKKEKKKI 946

Query: 167  KRQADFDDKGDVGDLSADEILELRGITHD-LHSLSRVNSSILWQQSRLLWLKDGDANSKY 225
              + D  DK     L + E L++R    + L S+ R      +Q+++   + +GD+N+KY
Sbjct: 947  LDKLDLLDKKAENSLLSPEELDIRWFCRNRLSSILREEEIKWYQRAKSKDILEGDSNTKY 1006

Query: 226  FHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDN---LPF 282
            FH V +G+ R+  I  L    +L++G   +++ + ++++  F     S +  D       
Sbjct: 1007 FHLVANGKHRKTRIFQLQDSDHLIDGDANLKSHITTYYKGLFGPPDDSLLQFDESRVADI 1066

Query: 283  KCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISD 342
              +S  +   LT+ F+  E+K A++  +  K+ GPDG    F + FW+ +K D++    +
Sbjct: 1067 PQISLLENEALTQDFTEKEIKKAIFQMEHNKASGPDGFPAEFYQVFWNVIKNDLLDLFKE 1126

Query: 343  FHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKII 402
            FH        +N   I L+ K     +I  +RPI L+   +KI +KV  NR+  V  K+I
Sbjct: 1127 FHNGSLPLFSLNFGTIILLPKCVEAMKIQQYRPICLLNVSFKIFTKVATNRVMSVAQKVI 1186

Query: 403  SDSQTAFVKDRQILDGILIANEVVDEA-RKN 432
            S +QTAF+  R I++G++I +E + E  RKN
Sbjct: 1187 SPTQTAFIPGRNIMEGVVILHETLHELHRKN 1217


>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
          Length = 2367

 Score =  173 bits (438), Expect = 3e-41
 Identities = 128/447 (28%), Positives = 216/447 (47%), Gaps = 27/447 (6%)

Query: 1    DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF---KGDGNAMSR 57
            DFN   +  E   SR   G      F D + D  L DL   G   T+    +G  N   R
Sbjct: 867  DFNETMWQFEH-FSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVR 925

Query: 58   IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKC------WQD 111
            +DR +  ++W   +  +  V L+   SDHCP+ L++  ++  P   R  KC      W+ 
Sbjct: 926  LDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKD--PHQLRQ-KCLHYEIVWER 982

Query: 112  LPGYNQFVKDKLKSFQIEGWGGFV--LREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQ 169
             P   Q +++   ++ + G    +  + + L  + TAL+ W      N+  +++  +K+ 
Sbjct: 983  EPEATQVIEE---AWVVAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKL 1039

Query: 170  ADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSV 229
            A+  +       +AD  + +R  T  ++ L      +  Q+SR+ WLKD D N+K+FHS 
Sbjct: 1040 AELIES------NADRTV-IRNATDHMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSR 1092

Query: 230  LSGRRRRNSIISLL-ADSNLVEGVQPIRNAVLSHFRDHFAAR-HTSRVGIDNLPFKCLSH 287
               R ++N I  L  A+  +      + +    +F+D + A  + +   +  L  + ++ 
Sbjct: 1093 AVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTD 1152

Query: 288  TDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNG 347
                 L + F+ DE+  A++     KSPGPDG    F +  W  +K D++  +  F + G
Sbjct: 1153 IMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTG 1212

Query: 348  KLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQT 407
             +  G+N T I LI K + P  + DFRPISL   +YK++SK L NRL+ +L  ++S  Q+
Sbjct: 1213 LMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQS 1272

Query: 408  AFVKDRQILDGILIANEVVDEARKNKR 434
            AFV+ R I D  L+A E     +KNK+
Sbjct: 1273 AFVQGRMITDNALLAFECFHAMQKNKK 1299


>UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa]
          Length = 870

 Score =  172 bits (436), Expect = 5e-41
 Identities = 129/437 (29%), Positives = 206/437 (46%), Gaps = 7/437 (1%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNA-MSRID 59
           DFN +  A ++ +S     +     F   I    L ++ L  R+FTW      A + ++D
Sbjct: 145 DFNMIYRARDKNNSN--LNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLD 202

Query: 60  RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
           R   +EEW L +P+    AL  G SDHCPL LS  +    PR  +    W  +PG+   V
Sbjct: 203 RCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKV 262

Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
           KD              L +KL+     L++W  G  S    +           D   +  
Sbjct: 263 KDIWSQPSSHTEPMHRLNQKLQRTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQEHR 322

Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
           +LS  E      +   +  L+ +  +   Q SR+  +++GDAN+K+FH  ++ RRRRN+I
Sbjct: 323 ELSPPETRLRAALKRKVLRLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTI 382

Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
             L  DS          + +  HF   F  R   R    N     ++  D + L +PF+ 
Sbjct: 383 QRLKKDSGWAVTHGEKESTIHDHFAS-FMGRPGPRPNELNWETLDITLIDLATLGEPFTE 441

Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH--RNGKLTRGINTTF 357
           +EV  A+ +  + K+PGPDG    F K  W+ +K+D++   S  +  R   L   +N+  
Sbjct: 442 EEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHLNL-LNSAN 500

Query: 358 IALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILD 417
           I LI K D  + ++D+RPISL+ S+ KI +K+LA RL+  + ++IS +Q+AF+K R I D
Sbjct: 501 IVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHD 560

Query: 418 GILIANEVVDEARKNKR 434
             L    +     + +R
Sbjct: 561 NYLFVRNMTRRYHRLRR 577


>UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]
          Length = 1833

 Score =  171 bits (434), Expect = 9e-41
 Identities = 129/461 (27%), Positives = 225/461 (47%), Gaps = 21/461 (4%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTW--FKGDG-NAMSR 57
           DFN   +  E KS R  S       F + + +  L D+   G  +T+   + +G N   R
Sbjct: 117 DFNEAMWQTEHKSHRKRSES-QMRDFREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVR 175

Query: 58  IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQ 117
           +DR + S  W  ++P +    L    SDH PL L  +E     RP ++++ ++++     
Sbjct: 176 LDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLEREETTLA-RPMKIMR-YEEVWERES 233

Query: 118 FVKDKLKSFQIEGWGGFVL---REKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
            + + ++     G     L    +K+K   T L  W      N+  KI  L+++  +  +
Sbjct: 234 SLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRN 293

Query: 175 KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQ-SRLLWLKDGDANSKYFHSVLSGR 233
              +G L  D   E+  +  +L  +      I W+Q SR+ WLK+GD N++YFH   S R
Sbjct: 294 ---IGLLDTDN--EVHSVKKELEEMLH-REEIWWKQRSRITWLKEGDLNTRYFHLKASWR 347

Query: 234 RRRNSIISLLA-DSNLVEGVQPIRNAVLSHFRDHFAAR-HTSRVGIDNLPFKCLSHTDGS 291
            ++N I  L   D +     + ++    S F+  +    + + V + N+  + +S    +
Sbjct: 348 AKKNKIKKLKKNDGSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNA 407

Query: 292 GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
            L KPF+ +E+  A++     K+PGPDG    F++  W  LK +V+  + +F  +  +  
Sbjct: 408 DLIKPFTNEEISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFFEDEVMQE 467

Query: 352 GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
           G+N T I +I K +  + + DFRPISL   +YK+++K L NR++ +L +IIS++Q+AF+ 
Sbjct: 468 GVNDTVIVMIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNRMRPMLQEIISEAQSAFIP 527

Query: 412 DRQILDGILIANEV---VDEARKNKRN*CCSKLILRRLLTR 449
            R I D  LIA E    +   ++  +N C  KL L +   R
Sbjct: 528 GRLITDNALIAFECFHSIKNCKRENQNFCALKLDLSKAYDR 568


>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  171 bits (434), Expect = 9e-41
 Identities = 120/424 (28%), Positives = 208/424 (48%), Gaps = 33/424 (7%)

Query: 26  FSDFIVDNSLIDLSLCGRRFTWF--KGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGL 83
           F   +    L +++  G +F+W+  + D     R+DR + ++ W   +P +    L +  
Sbjct: 160 FRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKIC 219

Query: 84  SDHCPLQLSVDEENWGPRPS-RMLKCWQDLPGYNQFVKDKLKSF--QIEGWGGFVLREKL 140
           SDH PL  ++  +NW      +  K W    G+    KD L +F  Q       ++ EK+
Sbjct: 220 SDHSPLINNLVGDNWRKWAGFKYDKRWVQREGF----KDLLCNFWSQQSTKTNALMMEKI 275

Query: 141 KFIKTALKEWHIGHASNIPGKIDSLK------KRQADFDDKGDVGDLSADEILELRGITH 194
              +  + +W      +   +I  L+       +Q  FD +            EL  +  
Sbjct: 276 ASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRR------------ELARLKK 323

Query: 195 DLHSLSRVNSSILWQQ-SRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLV-EGV 252
           +L S    N    WQ+ SR++W+++GD N+KYFH+    RR +N I  L+ +        
Sbjct: 324 EL-SQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSD 382

Query: 253 QPIRNAVLSHFRDHFAARHTSRV--GIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCD 310
           + +     ++F+  FA+         ++NL    +S    + L  P + +EV+ A +  +
Sbjct: 383 EDLGRVAEAYFKKLFASEDVGYTVEELENLT-PLVSDQMNNNLLAPITKEEVQRATFSIN 441

Query: 311 SYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRI 370
            +K PGPDG+N    ++FW+ + + +   +  F R+G +  G+N T I LI KI   +++
Sbjct: 442 PHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKM 501

Query: 371 NDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEAR 430
            DFRPISL   +YK++ K++ANRLK +L  +IS++Q AFVK R I D ILIA+E++    
Sbjct: 502 TDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALS 561

Query: 431 KNKR 434
            N +
Sbjct: 562 SNNK 565


>UniRef100_Q7Y1P7 Putative reverse transcriptase [Oryza sativa]
          Length = 1556

 Score =  171 bits (432), Expect = 1e-40
 Identities = 120/422 (28%), Positives = 205/422 (48%), Gaps = 19/422 (4%)

Query: 26   FSDFIVDNSLIDLSLCGRRFTWFKGDGN-AMSRIDRFLLSEEWCLQWPNSFQVALLRGLS 84
            F+  I   +L +L   GR FTW     N    ++DR L+S E+  ++P S    L R +S
Sbjct: 944  FNAVIDTLNLRELESSGRSFTWANHLQNQTFEKLDRILVSTEFETKFPLSTVSILTREIS 1003

Query: 85   DHCPLQLSVDEENWGPRPSRMLKC-WQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFI 143
            DH PL  +    +   +P    +  W    G++  VK+  +   IEG      + K++ +
Sbjct: 1004 DHTPLLYNSGGASAAYQPQFKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRL 1063

Query: 144  KTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEI------LELRGITHD-L 196
            +  L+ W    A NI G   + KK + +  DK D     A+        L ++ + +D L
Sbjct: 1064 RQFLRGW----AKNITG---AYKKEKKELLDKLDTLVKKAEHTILNEFELNVKHVLNDRL 1116

Query: 197  HSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIR 256
              L R      +Q++++  L +GDAN+KY+H + +GR R+  I  L   + ++ G   ++
Sbjct: 1117 AELLREEEIKWYQRAKVKHLLEGDANTKYYHLLANGRHRKTRIFQLQDGNEVITGDAQLK 1176

Query: 257  NAVLSHFRDHFAARHTSRVGIDNLP---FKCLSHTDGSGLTKPFSADEVKSAVWDCDSYK 313
              +  +F+  F    TS + +D       + +S  +   LT  F+ +E+K A++      
Sbjct: 1177 EHITKYFKTLFGPSQTSSIFLDESQVDDIRQVSAEENESLTADFTEEEIKCAIFQMKHNT 1236

Query: 314  SPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDF 373
            +PGPDG    F + FW  +K+D++   SDF +       +N   I L+ K    + I  +
Sbjct: 1237 APGPDGFPPEFYQAFWTIIKDDLLALFSDFQQGSLPLNSLNFGTIILLPKQKDVRTIQQY 1296

Query: 374  RPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNK 433
            RPI L+   +KI +KV  NRL  V  K+I  +QTAF+  R I++G +I +E + E    K
Sbjct: 1297 RPICLLNVSFKIFTKVATNRLTSVAQKVIKPTQTAFLPGRNIMEGAIILHETLHELHTKK 1356

Query: 434  RN 435
            ++
Sbjct: 1357 QD 1358


>UniRef100_Q8S5Q3 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1228

 Score =  169 bits (429), Expect = 3e-40
 Identities = 118/439 (26%), Positives = 210/439 (46%), Gaps = 16/439 (3%)

Query: 1    DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMSRID 59
            DFN  R+A E+ ++   S  +D   F+ FI +  L ++   G +FTW  K D      +D
Sbjct: 658  DFNLYRFASEKSNTNTNSRNMDM--FNSFIANLDLREIYRSGPKFTWTNKQDSLVQEVLD 715

Query: 60   RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENW-GPRPSRMLKCWQDLPGYNQF 118
            R L++ +W   +P +   ++LR  SDH PL L   E      +  +    W     + + 
Sbjct: 716  RILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWLAEESFKEL 775

Query: 119  VKDKL----KSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDD 174
            V  +L     S+ +E W      +K   ++  L  W   + S    +  +L+ +  + D 
Sbjct: 776  VIQRLLPRDNSYILEFWN-----KKQSSLRRFLVGWGKNNRSKKLREKRTLQCKIEELDK 830

Query: 175  KGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRR 234
            K    +L++DE  +     +DL  +  +      ++    W+ +GD N+++FH V +GR+
Sbjct: 831  KALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFHRVANGRK 890

Query: 235  RRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKC---LSHTDGS 291
            R+  I SL+     +     IR  ++ +++  F    T+ + +    +     LS     
Sbjct: 891  RKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPTANIHLSQGVWTNHLNLSDASKE 950

Query: 292  GLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTR 351
             LT+PF   E+   + +     +PGPDG +  F + FW ++K D+   +   H      +
Sbjct: 951  NLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEMLLMLHNEDLDLK 1010

Query: 352  GINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVK 411
             +N   I+LI K ++P  I  FRPI ++   +K LSKV+ NRL  V  +++S +QTAF+ 
Sbjct: 1011 RLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADEVVSQTQTAFIP 1070

Query: 412  DRQILDGILIANEVVDEAR 430
             R IL+G +I +EV+ E +
Sbjct: 1071 GRFILEGCVIIHEVLHELK 1089


>UniRef100_Q9SA04 F28K20.4 protein [Arabidopsis thaliana]
          Length = 1253

 Score =  169 bits (429), Expect = 3e-40
 Identities = 121/442 (27%), Positives = 207/442 (46%), Gaps = 21/442 (4%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGN--AMSRI 58
           DFN V    E   +  ++       F D + +  L DL   G  FTW+          ++
Sbjct: 93  DFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKL 152

Query: 59  DRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDE-ENWGPRPSRMLKCWQDLPGYNQ 117
           DR L++E WC ++P+++ V      SDH    + ++   +   RP R        P +  
Sbjct: 153 DRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFIS 212

Query: 118 FVKDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGD 177
            V +   S  + G   F + +KLK +K  ++ + + + SN+  ++           +K  
Sbjct: 213 LVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTL 272

Query: 178 VGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRN 237
                 +  LE+      L  L +   S   Q+SR+ W+ +GD+N+ YFH +   R+  N
Sbjct: 273 SDPTIPNAALEMEAQRKWL-ILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVN 331

Query: 238 SIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNL---------PFKCLSHT 288
           +I  ++ D+ +    Q     +  H  ++F+      VG   L         PF+C SH 
Sbjct: 332 TIHIIIDDNGVKIDTQL---GIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRC-SHD 387

Query: 289 DGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGK 348
               L   FS  ++KSA +   S K+ GPDG    F KE W  +  +V   +S+F  +  
Sbjct: 388 QKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSV 447

Query: 349 LTRGINTTFIALISKIDSPQRINDFRPISLVG----SLYKILSKVLANRLKLVLGKIISD 404
           L +  N T + LI KI +  ++NDFRPIS       +LYK+++++L NRL+ +L ++IS 
Sbjct: 448 LLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISP 507

Query: 405 SQTAFVKDRQILDGILIANEVV 426
            Q+AF+  R + + +L+A E+V
Sbjct: 508 FQSAFLPGRFLAENVLLATELV 529


>UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]
          Length = 1189

 Score =  168 bits (425), Expect = 9e-40
 Identities = 127/437 (29%), Positives = 204/437 (46%), Gaps = 7/437 (1%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNA-MSRID 59
           DFN +  A ++ +S     +     F   I    L ++ L  R+FTW      A + ++D
Sbjct: 145 DFNMIYRARDKNNSN--LNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLD 202

Query: 60  RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
           R   +EEW L +P+    AL  G SDH PL LS  +    PR  +    W  +PG+   V
Sbjct: 203 RCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKV 262

Query: 120 KDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVG 179
           KD              L +KL+     L++W  G  S    +           D   +  
Sbjct: 263 KDIWSQPSSHTEPMHRLNQKLQHTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQEHR 322

Query: 180 DLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSI 239
           +L+  E      +   +  L+ +  +   Q SR+  +++GDAN+K+FH  ++ RRRRN+I
Sbjct: 323 ELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTI 382

Query: 240 ISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFSA 299
             L  DS            +  HF   F  R   R    N     ++  D + L +PF+ 
Sbjct: 383 QRLKKDSGWAVTHGDKELTIHDHFAS-FMGRPGPRPNELNWETLDITPIDLATLGEPFTE 441

Query: 300 DEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH--RNGKLTRGINTTF 357
           +EV  A+ +  + K+PGPDG    F K  W+ +K+D++   S  +  R   L   +N+  
Sbjct: 442 EEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHLNL-LNSAN 500

Query: 358 IALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILD 417
           I LI K D  + ++D+RPISL+ S+ KI +K+LA RL+  + ++IS +Q+AF+K R I D
Sbjct: 501 IVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHD 560

Query: 418 GILIANEVVDEARKNKR 434
             L     +    + +R
Sbjct: 561 NYLFVRNTIRRYHRQRR 577


>UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  167 bits (424), Expect = 1e-39
 Identities = 118/415 (28%), Positives = 201/415 (48%), Gaps = 18/415 (4%)

Query: 34  SLIDLSLCGRRFTWF--KGDGNAMSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQL 91
           SL D++  G  FTW   +  G  M ++DR L+++ W   +  S+ V    G SDH   ++
Sbjct: 176 SLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRI 235

Query: 92  SVDEENW----GPRPSRMLKCWQDLPGYNQFVKDKLKSFQ---IEGWGGFVLREKLKFIK 144
           S++ E      G +P + +    D+  +   V    K  +   +     F   + LK +K
Sbjct: 236 SLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLK 295

Query: 145 TALKEWHIGHASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNS 204
             ++        N+  K +   K         ++ + S+  + E          ++ +  
Sbjct: 296 PKIRSMARDRLGNLSKKANEAYKILCA-KQHVNLTNPSSMAMEEENAAYSRWDRVAILEE 354

Query: 205 SILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGV-QPIRNAVLSHF 263
             L Q+S+L W + GD N+K FH   + R   N+I  +L++  +V+     I+      F
Sbjct: 355 KYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFF 414

Query: 264 RDHFAARHTSRVGI------DNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGP 317
           R+          G+        LP +C S  D   L +P +A+E++  ++   S KSPGP
Sbjct: 415 REFLQLIPNDFEGVTITELQQLLPVRC-SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGP 473

Query: 318 DGVNFGFIKEFWDELKEDVMRFISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPIS 377
           DG    F K  W+ + ++    +  F   G L +GIN+T +ALI K    + + D+RPIS
Sbjct: 474 DGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPIS 533

Query: 378 LVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKN 432
               LYK++SK++ANRLKLVL K I+ +Q+AFVKDR +++ +L+A E+V +  K+
Sbjct: 534 CCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKD 588


>UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]
          Length = 1023

 Score =  167 bits (423), Expect = 2e-39
 Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 5/403 (1%)

Query: 35  LIDLSLCGRRFTWFKGDGNA-MSRIDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSV 93
           L ++ L  R+FTW      A + ++DR   +EEW L +P+    A   G SDHCPL LS 
Sbjct: 11  LHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCPLVLSN 70

Query: 94  DEENWGPRPSRMLKCWQDLPGYNQFVKDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIG 153
            +    PR  +    W  +PG+   VKD              L +KL+     L++W  G
Sbjct: 71  PQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHHLNQKLQRTAVGLRDWTKG 130

Query: 154 HASNIPGKIDSLKKRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRL 213
             S    +           D   +  +LS  E      +   +  L+ +  +   Q SR+
Sbjct: 131 ICSEAKLQFHMALNVIQRLDVAQEHRELSPPETRLRAALKRKVLGLASIERARKKQASRV 190

Query: 214 LWLKDGDANSKYFHSVLSGRRRRNSIISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTS 273
             +++GDAN+K+FH  ++ RRRRN+I  L  DS            +  HF   F  R   
Sbjct: 191 THIREGDANTKFFHLRVNARRRRNTIQRLKKDSGWAVTHGEKELTIHDHFAS-FMGRPGP 249

Query: 274 RVGIDNLPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELK 333
           R    N     ++  D + L +PF+ +EV  A+ +  + K+PGPDG    F K  W+ +K
Sbjct: 250 RPNELNWETLDITPIDLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIK 309

Query: 334 EDVMRFISDFH--RNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLA 391
           +D++   S  +  R   L   +N+  I LI K D  + ++D+RPISL+ S+ KI +K+LA
Sbjct: 310 DDILLVFSSIYNLRCAHLNL-LNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLA 368

Query: 392 NRLKLVLGKIISDSQTAFVKDRQILDGILIANEVVDEARKNKR 434
            RL+  + ++IS +Q+AF+K R I D  L    ++    + +R
Sbjct: 369 LRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNMIRRYHRLRR 411


>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1382

 Score =  165 bits (417), Expect = 8e-39
 Identities = 134/447 (29%), Positives = 210/447 (46%), Gaps = 26/447 (5%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWF-KGDGNAMS--R 57
           DFN V   +E    R  S      HF   + D  LIDL   G +FTW  K D N+ S  R
Sbjct: 142 DFNEVLCLDEHLGMRERSEP-HMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVR 200

Query: 58  IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPS------RMLKCWQD 111
           +DR + + E+   + +     ++   SDH  + + +   N G R        R    W  
Sbjct: 201 LDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLR 260

Query: 112 LPGYNQFVKDKLKSFQIEGWGGFVLR---EKLKFIKTALKEWHIGHASNIPGKIDSLKKR 168
              Y + V++   S++I   G   LR     L+ +  +LK+W      ++  KI  ++++
Sbjct: 261 AEDYREVVEN---SWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERK 317

Query: 169 QADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHS 228
                 +  V D+    I E + I   L  L      +  Q+SR+ WL++GD N+ +FH+
Sbjct: 318 LKSLR-QSPVNDVV---IQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHA 373

Query: 229 VLSGRRRRNSIISLLADSNL----VEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKC 284
             S RRR N I  L+ D        EG++ +      +            V +D +P K 
Sbjct: 374 RASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEEV-LDAIPNKV 432

Query: 285 LSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFH 344
               +G  L K ++ +E+K+A++   S K+PGPDG    F +  W  L+E +   +  F 
Sbjct: 433 GDFINGE-LGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFL 491

Query: 345 RNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISD 404
              ++  G+  + + LI K+++   ++ FRPISL   LYKI SKVLANRLK  L  I+S+
Sbjct: 492 LGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSE 551

Query: 405 SQTAFVKDRQILDGILIANEVVDEARK 431
            Q+AFV  R I D  L+A E +   RK
Sbjct: 552 FQSAFVPGRLITDSALVAYECLHTIRK 578


>UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa]
          Length = 1349

 Score =  164 bits (415), Expect = 1e-38
 Identities = 128/437 (29%), Positives = 207/437 (47%), Gaps = 8/437 (1%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGN-AMSRID 59
           DFN +  A  + + R    ++    F   I    + +L+L GRRFTW K   N   ++ID
Sbjct: 470 DFNLIYLASGKNNDRLNRRMMQ--RFKGTIDRLGIKELALNGRRFTWAKDGANPTQTKID 527

Query: 60  RFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENWGPRPSRMLKCWQDLPGYNQFV 119
           R     +W + + +++  AL    SDH PL L   E+       R    W   P + +  
Sbjct: 528 RAFCKPDWDILFGSAYMAALSSSSSDHAPLFLVGCEQRELNTSFRFEAYWLKFPEFLEVA 587

Query: 120 KDKLKSFQIEGWGGFV-LREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGDV 178
            +      I G   F  L  KLK +   LK W      +I  +     +     D   + 
Sbjct: 588 SESWNR-PIRGSNPFAKLNLKLKRLARDLKRWSKFRIGDIRLQHAIANEVIFQLDVAQEE 646

Query: 179 GDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRNS 238
             L+ +E+L    +   +  L+ +    + Q++RL WLK GD NSK+FH   + R+R+N 
Sbjct: 647 RALTDEELLLKSTLKSRVLGLATLVKIRIRQRARLTWLKCGDVNSKFFHLKANSRKRKNF 706

Query: 239 IISLLADSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGIDNLPFKCLSHTDGSGLTKPFS 298
           I +L+  S +    +  + A L  +      ++  R    N     L   D S + + F+
Sbjct: 707 IPALITPSGIAVTTEQ-KEAELERYFSQRLGQYVPRSLTLNWSELSLPSLDLSEVEEDFT 765

Query: 299 ADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHR-NGKLTRGINTTF 357
            +E+K A+ +    K+PGPD     F K+ W+ +K D+++ I+ F   N      +N+  
Sbjct: 766 EEELKEAISNLPPQKAPGPDSYIGAFFKKAWEVIKSDLLQAINHFSSLNSDRLEDLNSAN 825

Query: 358 IALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFVKDRQILD 417
           I LI K     R+ DFRPISL+ S  KIL+K+LANRL   L +++S +Q+AF++ R I D
Sbjct: 826 ICLIPKKGEATRVEDFRPISLMHSFAKILAKMLANRLAPKLHELVSPNQSAFIRKRAIHD 885

Query: 418 GIL-IANEVVDEARKNK 433
             L + N + + +RK K
Sbjct: 886 NFLYVQNMIKNFSRKKK 902


>UniRef100_O64473 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1447

 Score =  160 bits (406), Expect = 2e-37
 Identities = 123/445 (27%), Positives = 209/445 (46%), Gaps = 27/445 (6%)

Query: 1   DFNAVRYAEERKSSRGISGV-IDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNAM--SR 57
           DFN     EE         V +    F   +   SL D++  G  +TW     + +   +
Sbjct: 550 DFNETLELEEHSKVEDNPVVSMGMRDFRSMVNYCSLTDMAHHGPLYTWSNKREHDLIAKK 609

Query: 58  IDRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENW----GPRPSRMLKCWQDLP 113
           +DR ++++ W   +P S+ V    G  DH   ++++++       G RP + +    ++ 
Sbjct: 610 LDRVMVNDVWTQSFPQSYSVFEAGGCLDHLRGRINLNDGPGSIVRGKRPFKFVNVLTEME 669

Query: 114 GYNQFVKDKLKSFQ---IEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKI----DSLK 166
            +   V    K  +   +     F   +KLK +K  L+        N+  K     D+L 
Sbjct: 670 DFKPTVDSYWKETEPIFLSTSSLFRFSKKLKSLKPLLRNLAKERLGNLVKKTREAYDTLC 729

Query: 167 KRQADFDDKGDVGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYF 226
           K+Q     +  + + + + + E          ++ +    L ++S+L WL  GD N+K F
Sbjct: 730 KKQ-----ESTLNNPTPNAMKEEVEAHDRWEHVAGLEEKFLKKKSKLHWLDGGDKNNKAF 784

Query: 227 HSVLSGRRRRNSIISLLA-DSNLVEGVQPIRNAVLSHFRDHFAARHTSRVGI------DN 279
           H  +  R  +NSI  +   D ++      I+      FR+          G+      D 
Sbjct: 785 HRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAERFFREFLQLIPNEYEGVTMADLQDL 844

Query: 280 LPFKCLSHTDGSGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRF 339
           LPF+C S T+   LT+  +A+E+K  ++   + KSPGPDG    F K  W+ L  + +  
Sbjct: 845 LPFRC-SETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILA 903

Query: 340 ISDFHRNGKLTRGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLG 399
           I  F   G L +GINTT +ALI K    + + D+RPIS    +YK++SK++ANRLKLV  
Sbjct: 904 IQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKLVPP 963

Query: 400 KIISDSQTAFVKDRQILDGILIANE 424
           K I+ +Q+AFVKDR +++ +L+A +
Sbjct: 964 KFIAGNQSAFVKDRLLIENVLLATD 988


>UniRef100_Q9C6L3 Hypothetical protein F2J7.11 [Arabidopsis thaliana]
          Length = 1213

 Score =  159 bits (403), Expect = 3e-37
 Identities = 119/436 (27%), Positives = 202/436 (46%), Gaps = 13/436 (2%)

Query: 1   DFNAVRYAEERKSSRGISGVIDYHHFSDFIVDNSLIDLSLCGRRFTWFKGDGNA--MSRI 58
           DFN V   +E  +   ++  I+   F D ++   L DL   G  FTW+          +I
Sbjct: 144 DFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAKKI 203

Query: 59  DRFLLSEEWCLQWPNSFQVALLRGLSDHCPLQLSVDEENW-GPRPSRMLKCWQDLPGYNQ 117
           DR L+++ W   +P+S  +      SDH    + ++E +    RP +          +  
Sbjct: 204 DRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLN 263

Query: 118 FVKDKLKSFQIEGWGGFVLREKLKFIKTALKEWHIGHASNIPGKIDSLKKRQADFDDKGD 177
            V+D   +  + G   F + +KLK +K  +K++   + S +  +            D+  
Sbjct: 264 LVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTL 323

Query: 178 VGDLSADEILELRGITHDLHSLSRVNSSILWQQSRLLWLKDGDANSKYFHSVLSGRRRRN 237
                 +   EL       H L+    S   Q+SR+ W  +GD N+KYFH +   R   N
Sbjct: 324 ADPTPINASFELEA-ERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSN 382

Query: 238 SIISLLADSN--LVEGVQPIRNAVLSHFRDHFAARHTSRVGIDN-----LPFKCLSHTDG 290
           SI S L D N  LV+  + I +   S+F           +   N     L ++C S    
Sbjct: 383 SI-SALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRC-SPAQV 440

Query: 291 SGLTKPFSADEVKSAVWDCDSYKSPGPDGVNFGFIKEFWDELKEDVMRFISDFHRNGKLT 350
             L   FS +++++A++     KS GPDG    F  + W  +  +V   I +F  +G L 
Sbjct: 441 CELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLL 500

Query: 351 RGINTTFIALISKIDSPQRINDFRPISLVGSLYKILSKVLANRLKLVLGKIISDSQTAFV 410
           +  N T I LI KI +P   +DFRPIS + +LYK+++++L +RL+ +L  +IS +Q+AF+
Sbjct: 501 KQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFL 560

Query: 411 KDRQILDGILIANEVV 426
             R + + +L+A ++V
Sbjct: 561 PGRSLAENVLLATDLV 576


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.344    0.155    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,728,848,598
Number of Sequences: 2790947
Number of extensions: 72007637
Number of successful extensions: 268541
Number of sequences better than 10.0: 598
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 267289
Number of HSP's gapped (non-prelim): 863
length of query: 1087
length of database: 848,049,833
effective HSP length: 138
effective length of query: 949
effective length of database: 462,899,147
effective search space: 439291290503
effective search space used: 439291290503
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 80 (35.4 bits)