BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.4 - phase: 0 
         (581 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_O82276 Putative non-LTR retroelement reverse transcrip...   220  8e-56
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip...   177  6e-43
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip...   168  5e-40
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]        168  5e-40
UniRef100_Q7X970 BZIP-like protein [Oryza sativa]                     166  2e-39
UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis tha...   165  4e-39
UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]                      163  1e-38
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri...   159  3e-37
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip...   156  2e-36
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip...   148  5e-34
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr...   147  8e-34
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A...   145  2e-33
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi...   145  4e-33
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha...   144  9e-33
UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]        144  9e-33
UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis th...   143  1e-32
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip...   140  1e-31
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip...   139  2e-31
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip...   135  3e-30
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip...   133  2e-29

>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  220 bits (561), Expect = 8e-56
 Identities = 157/598 (26%), Positives = 269/598 (44%), Gaps = 23/598 (3%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
            +  RLA WK R L+  GR+TL  +VL+SIP + M    LP +  D++D+ +R F+W  T 
Sbjct: 635  VSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTM 694

Query: 60   TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT- 118
              K  HL++W+KI  PK  GG+ +R+AR+ N +L+ K+ W ++Q    LW  ++  KY  
Sbjct: 695  EKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV 754

Query: 119  -GGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPI--- 172
             G  +T +     R S TW S+ +  + ++  G  W  G G +  FW   W    P+   
Sbjct: 755  GGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL 814

Query: 173  -GNYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIW 231
              + +P  +   ++++    L   G +  +L   LP  V+  + ++  Q      D + W
Sbjct: 815  GTDMIP--EGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISW 872

Query: 232  SQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLS 291
               ++G +T +S ++ L+   V     +   ++ IW+L  PE+ +  IWL  QN + T  
Sbjct: 873  KGTQDGAFTVRSAYS-LLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNV 931

Query: 292  LLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK-IGFTSNDFVTTATTYDWIKL 350
                R ++ + IC+ C   +ET +H +RDC   + IW++ +    +    + +  +W+  
Sbjct: 932  ERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFT 991

Query: 351  G---ISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN----SAFNG 403
                + G   ++F  G+WW W+ R         +   RL   I   A+        A   
Sbjct: 992  NMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKICRDRL-KFIKDMAEEVRRVHVGAVGN 1050

Query: 404  EENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNS 463
              N    +R+++W   +     +  DG+  G       GG +RN  G ++ GF+ L   S
Sbjct: 1051 RPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFA-LNIGS 1109

Query: 464  ADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLL 523
                LAEL   + GL +  D     +    D  L V  ++      H  + L++  +   
Sbjct: 1110 CAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFF 1169

Query: 524  -NDRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGIYFVR 580
              D  + + H  RE N+ AD  A +       L    + P  +  LL AD  G  F R
Sbjct: 1170 TRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPR 1227


>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  177 bits (450), Expect = 6e-43
 Identities = 150/588 (25%), Positives = 245/588 (41%), Gaps = 62/588 (10%)

Query: 4    RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
            ++  W++  L+  G+  L  +V  ++P+Y M    +P+ IC  I+     F W+     +
Sbjct: 775  KVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGR 834

Query: 63   GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
            G+H   W  +S PK +GGL  +     N +LLGK +W M+   + L   +  ++Y    +
Sbjct: 835  GLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSD 894

Query: 123  TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
             L A   +R S  W SI  A+ ++K G    IG+G + + W   W    P      V   
Sbjct: 895  PLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRS 954

Query: 182  HDLQLSVRDVLSAPGNHARVLYTNLPPDVEN-HINNIHTQFNDNIE-------------- 226
            H        V     N   V+   L PD  + + N +   F DN +              
Sbjct: 955  H-------LVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR 1007

Query: 227  DALIWSQNKNGTYTTKSGFNWLITSRV-----------PAIEPILHAWSWIWRLKVPEKY 275
            D   W  +++G Y+ KSG+ W++T  +           P+++PI   +  IW+L VP K 
Sbjct: 1008 DRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNPQEVLQPSLDPI---FQQIWKLDVPPKI 1063

Query: 276  KFLIWLACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTS 335
               +W    N +   S L +R +A    C RC    ET  H +  C F++  W      +
Sbjct: 1064 HHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPA 1123

Query: 336  ---NDFVTTATTYDWIKLGISGSR------SSIFLAGLWWVWRHRNLMCLNNETLSLFRL 386
                ++  +        L +  S+       ++    LW +W++RN +         F  
Sbjct: 1124 PPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGRE---FTA 1180

Query: 387  CNNIISAADAANSAFNGEENPPH-----SDRLVKWNNRNHQDFILNVDGSCIGTPPRTGY 441
               I+ A +  ++  N +E  P       DR VKW   +H     N DG+        G 
Sbjct: 1181 PQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGV 1240

Query: 442  GGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNL 501
            G VLRN  G  +      +P+   +L  E+ A+   +  ++  N   ++  SDS   V+L
Sbjct: 1241 GWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSL 1300

Query: 502  IAN--DTPRYHIYAALIQNIKDLLND-RNISLHHTLREGNQCADFFAK 546
            I N  D P     A  IQ+I++LL     +    T REGN  AD  A+
Sbjct: 1301 IQNEMDIPS---LAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTAR 1345


>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score =  168 bits (425), Expect = 5e-40
 Identities = 146/553 (26%), Positives = 229/553 (41%), Gaps = 49/553 (8%)

Query: 1   MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
           M  ++ +W N+LL+  G+  L  S++T+IP+Y M    LP  +   I    R F W  T 
Sbjct: 227 MDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTK 286

Query: 61  NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
            K  I  V W K++ PK +GGL+IR  ++ N +LL K  W ++Q    L   +   KY  
Sbjct: 287 VKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFP 346

Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
               L A A ++SS  W SI+    ++  G  +  G+G++   W  NW  L+P    V  
Sbjct: 347 KERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGT 406

Query: 179 IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
            D    QL V D+L     +  +L   +  +   HI  I         DA+ W    +G 
Sbjct: 407 CDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSIT-GANDAITWIYTHDGN 465

Query: 239 YTTKSGFNWL--ITSRVPAIEPILH------AWSWIWRLKVPEKYKFLIWLACQNAVPTL 290
           Y+ KSG++ L  ++ +  A  P  +       ++ IW+   P K K   W +  NA+PT 
Sbjct: 466 YSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTA 525

Query: 291 SLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI--------GFTSNDFVTTA 342
             L  R +     C RCGE  E   H +  C  SK+IW++            SN F    
Sbjct: 526 GNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNL 585

Query: 343 TTYDWIKLGISGSRS-SIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAF 401
            +    KL  S  +  S+F    W +W+ RN +  NN+  S+       +        + 
Sbjct: 586 ESIQ--KLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQWKESL 643

Query: 402 NGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLR-----NSAGLFISGF 456
           N  E      +L   +N             C        YGG L+     + A   + G 
Sbjct: 644 NCNEQQQRKPQLHDSHN-----------NKC--------YGGHLKTLRTLSKAQFVLRGM 684

Query: 457 SGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTP--RYHIYAA 514
           S + P S   L AE  A+   +  +  L   +I+ + D       I   T    Y   A 
Sbjct: 685 SSIPPTSTP-LEAEAEALKLAMIHLQRLGYEDIIFHGDVAALFQPITRTTHSCEYSPIAT 743

Query: 515 LIQNIKDLLNDRN 527
            +++I+++  D N
Sbjct: 744 FLRDIENIAADTN 756


>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
          Length = 791

 Score =  168 bits (425), Expect = 5e-40
 Identities = 156/609 (25%), Positives = 246/609 (39%), Gaps = 65/609 (10%)

Query: 4   RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
           R+  W    L+  G+  L  +V+ +IP Y M    LP+++ D + + T+NF W      +
Sbjct: 185 RVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQR 244

Query: 63  GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
             H   W  ++ PK++GGL  R     N +LL +  W ++   + L   +L  KY    +
Sbjct: 245 KTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGS 304

Query: 123 TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
            +  S  + SSP W SI    ++LK G  WR+G+G+S   W   W  L    +  P+   
Sbjct: 305 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPW--LPRDHSRRPITGK 362

Query: 182 HDLQLS-VRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNI-------EDALIWSQ 233
            + +L  V D+++  G+          P +  + +N+  +   NI       ED + W  
Sbjct: 363 ANCRLKWVSDLITEDGSWD-------VPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 415

Query: 234 NKNGTYTTKSGFNWLITSRVPAIEP--------ILHAWSWIWRLKVPEKYKFLIWLACQN 285
           +KNG ++ +S +   + +++  IE         I  AW  IW+ KVP+K K   W    N
Sbjct: 416 DKNGMFSVRSAYR--LAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 473

Query: 286 AVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW---QKIGFTSNDFVTTA 342
            + T+     R +  S +C  C  E+E   H +  C  +  +W    K G  S D   + 
Sbjct: 474 CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASV 533

Query: 343 TTYDWI---KLGISGSRSSIFLAGLWWVWRHRNLMCLNNE---TLSLFRLCNNIISAADA 396
               W+      I     ++FL  LW  W  RN +        T +  R   + +     
Sbjct: 534 LGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQ 593

Query: 397 ANSAFNGE-ENPPHSDRLVKWNN-------RNHQD---------FILNVDGSCIGTPPRT 439
              A   +     H  R V            NHQ            LNVDGS   +  + 
Sbjct: 594 IRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKG 653

Query: 440 GYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAV 499
           G G +LRNSAG  I      +    + L +EL A  +GLKL     +  I   +D    V
Sbjct: 654 GLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVV 713

Query: 500 NLIANDTPRYHIYAALIQNIKDLL-NDRNISLHHTLREGN---------QCADFFAKFGA 549
            L+      + + A +I   + LL  +R IS+    R  N           ADF A F  
Sbjct: 714 QLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWL 773

Query: 550 NSDAALVVH 558
                L+ H
Sbjct: 774 GESCNLISH 782


>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
          Length = 2367

 Score =  166 bits (419), Expect = 2e-39
 Identities = 145/564 (25%), Positives = 233/564 (40%), Gaps = 55/564 (9%)

Query: 4    RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-K 62
            R+  W    L+  G+  L  +V+ +IP Y M    LP+++ D + + T+NF W      +
Sbjct: 1509 RVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQR 1568

Query: 63   GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
              H   W  ++ PK++GGL  R  R  N +LL +  W ++   + L   +L  KY    +
Sbjct: 1569 KTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGS 1628

Query: 123  TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
             +  S  + SSP W SI    ++LK G  WR+G+G+S   W  +W  L    +  P+   
Sbjct: 1629 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSW--LPRDHSRRPITGK 1686

Query: 182  HDLQLS-VRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNI-------EDALIWSQ 233
             + +L  V D+++  G+          P +  + +N+  +   NI       ED + W  
Sbjct: 1687 ANCRLKWVSDLITEDGSWD-------VPKIHQYFHNLDAEVILNICISSRSEEDFIAWHP 1739

Query: 234  NKNGTYTTKSGFNWLITSRVPAIEP--------ILHAWSWIWRLKVPEKYKFLIWLACQN 285
            +KNG ++ +S +   + +++  IE         I  AW  IW+ KVP+K K   W    N
Sbjct: 1740 DKNGMFSVRSAYR--LAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 1797

Query: 286  AVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW---QKIGFTSNDFVTTA 342
             + T+     R +  S +C  C  E+E   H +  C  +  +W    K G  S D   + 
Sbjct: 1798 CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASV 1857

Query: 343  TTYDWI---KLGISGSRSSIFLAGLWWVWRHRNLMCLNNE---TLSLFRLCNNIISAADA 396
                W+      I     ++FL  LW  W  RN +        T +  R   + +     
Sbjct: 1858 LGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQ 1917

Query: 397  ANSAFNGE-ENPPHSDRLVKWNN-------RNHQD---------FILNVDGSCIGTPPRT 439
               A   +     H  R V            NHQ            LNVDGS   +  + 
Sbjct: 1918 IRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKG 1977

Query: 440  GYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAV 499
            G G +LRNSAG  I      +    + L +EL A  +GLKL     +  I   +D    V
Sbjct: 1978 GLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVV 2037

Query: 500  NLIANDTPRYHIYAALIQNIKDLL 523
             L+      + + A +I   + LL
Sbjct: 2038 QLLQGIGRDFSVLANIIHEARHLL 2061


>UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis thaliana]
          Length = 947

 Score =  165 bits (417), Expect = 4e-39
 Identities = 137/538 (25%), Positives = 228/538 (41%), Gaps = 66/538 (12%)

Query: 1   MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
           + +RLA WK R L+  GRLTL  SVL+ IP + M T  LPQ+  + +D+  R F+   + 
Sbjct: 449 VSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSA 508

Query: 61  NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
            K  +HLV W ++ LPK+ GGL IR ++  N +L+ K+ W ++     LW  +L +KY  
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYRV 568

Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
           G                      + ++  G  W +G+G    FW  NW S   + N   +
Sbjct: 569 G---------------------LREVVSRGSRWVVGNGRDILFWSDNWLSHEALINRAVI 607

Query: 179 -IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHIN-NIHTQFNDNI---EDALIWSQ 233
            I   + +L V+D+ +   N        + P +  H    +     D++    D L W  
Sbjct: 608 EIPNSEKELRVKDLWA---NGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGY 664

Query: 234 NKNGTYTTKSGFNWLITSRVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
           + +G +T KS +  L     P   P + A +  +WR+   E+ K  +W            
Sbjct: 665 SADGVFTVKSAYRLLTEDHDP--RPNMAAFFDRLWRVVALERVKTFLW------------ 710

Query: 293 LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDF-VTTATTYDW--IK 349
                +  + +C  C   DET +H ++DC     IW+++      +     + + W  + 
Sbjct: 711 ----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVN 766

Query: 350 LGISGSR-----SSIFLAGLWWVWRHRNLMCLN-----NETLSLFRLCNNIISAADAANS 399
           LG+  +      +++F   +WW W+ R            + +  FR     +S A A +S
Sbjct: 767 LGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHS 826

Query: 400 AFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGL 459
              G       +RLV W   + +   LN DG+  G       GGVLR+  G +  GF+ L
Sbjct: 827 QNGGLRT--RVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFA-L 883

Query: 460 IPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQ 517
                   LAEL  ++ GL +  +     +    DS L V  +       H  + L++
Sbjct: 884 DIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFLVR 941


>UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  163 bits (412), Expect = 1e-38
 Identities = 137/538 (25%), Positives = 220/538 (40%), Gaps = 38/538 (7%)

Query: 65  HLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG--HN 122
           HLV W K+  PK  GGL +RAA+  N +L+ K+ W ++Q  N LW  +L  KY  G   +
Sbjct: 194 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRD 253

Query: 123 TLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVID 180
           + +       S TW SI I  ++++  G  W  G G    FW   W S  P+        
Sbjct: 254 SRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPLLELDNGER 313

Query: 181 VHDLQLSVRDVLSAPGNHARVLYTNLPPDVENH----INNIHTQFNDNIEDALIWSQNKN 236
             D    V   L  PG      +  + P   N+    +  +         D L W  +++
Sbjct: 314 PTDCDTVVAKDLWIPGRGWD--FAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQD 371

Query: 237 GTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHR 296
           G ++ +S +  L    VP    +   ++ +W+++VPE+ K  +WL    AV T    + R
Sbjct: 372 GQFSVRSAYEMLTVDEVPR-PNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRR 430

Query: 297 SMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI-------GFTSNDFVTTATTYDWIK 349
            ++ S +C  C    E+ +H +RDC     IW ++       GF S       + ++W+ 
Sbjct: 431 HLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSK------SLFEWLY 484

Query: 350 LGISGSR--------SSIFLAGLWWVWRHR--NLMCLNNETLSLFRLCNN-IISAADAAN 398
             + G R        S+IF   +WW W+ R  N+   N +     +      +    A +
Sbjct: 485 DNL-GDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHS 543

Query: 399 SAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
                    P  +R++ W +       +N DG+  G P     GGVLR+  G +  GFS 
Sbjct: 544 GNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFS- 602

Query: 459 LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQN 518
           L         AEL  ++ GL    +  V  +    DS + V  +       H  + L++ 
Sbjct: 603 LNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRL 662

Query: 519 IKDLL-NDRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALG 575
               L  D  + + H  RE N+ AD  A +  +           P  +  LLR D LG
Sbjct: 663 CHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLG 720


>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  159 bits (401), Expect = 3e-37
 Identities = 105/391 (26%), Positives = 188/391 (47%), Gaps = 38/391 (9%)

Query: 1   MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIW-RGT 59
           + TRLA WK R L+  GR+TL  +VL+SIP + M T  LP++  D +D+ +R+F+W    
Sbjct: 297 LTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSV 356

Query: 60  TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKY-- 117
           T +  HL++WK++  P++ GGL IR A++ N +LL K+ W ++Q  + LW  ++   Y  
Sbjct: 357 TQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRV 416

Query: 118 TGGHNTLYASANNRSSPTWSSI-IRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNY 175
               +  +    +  S TW S+ +  + ++  G +W IG G    FW   W +  P+   
Sbjct: 417 QDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLA-- 474

Query: 176 VPVIDVHDLQLSVRDVLSA-PGNHARVLYTN--------LPPDVENHINNIHTQ--FNDN 224
                    +L V++  +   G  AR L  N        + P + ++ N +  Q    D+
Sbjct: 475 ---------ELLVQEPPAGWKGMRARDLRRNGIGWDMATIAPYISSY-NRLQLQSFVLDD 524

Query: 225 I---EDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWL 281
           I    D + W ++++G +   + +++L     P  + +   +  +W +  PE+ +  +WL
Sbjct: 525 ITGARDRISWGESQDGRFKVSTTYSFLTRDEAPR-QDMKRFFDRVWSVTAPERVRLFLWL 583

Query: 282 ACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTT 341
             Q A+ T    + R ++ + IC  C    E+ +H +RDC   + IW ++     + V+ 
Sbjct: 584 VAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIWLRLISDLANEVSA 643

Query: 342 ATTYDWIKLGISGSRSSIFLAGLWWVWRHRN 372
           A       L +SG+   I        WR  N
Sbjct: 644 A------HLKLSGNTKEIVQVERQVSWRKPN 668


>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  156 bits (394), Expect = 2e-36
 Identities = 144/554 (25%), Positives = 226/554 (39%), Gaps = 31/554 (5%)

Query: 7    SWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIH 65
            SW +R L++ G+  +  +VL S+P Y M    LP  +C  I      F W    + +   
Sbjct: 673  SWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTS 732

Query: 66   LVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLY 125
             V W K++ PKN GGL  R     N SLL KL W ++ S   L   +L  KY    + + 
Sbjct: 733  WVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFME 792

Query: 126  ASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLS-PIGNYVPVIDVH- 182
                ++ S  W SII  + ILK+G  W I +G   S W   W S+S P+    P +  H 
Sbjct: 793  CKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQ 852

Query: 183  DLQLSV---RDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTY 239
            DL++S    ++ L    N   V+     P+ EN I  +    +  + D L W   K+G Y
Sbjct: 853  DLRVSALINQNTLQWDWNKIAVIL----PNYENLIKQLPAPSSRGV-DKLAWLPVKSGQY 907

Query: 240  TTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMA 299
            T++SG+     + +P  +   +  S +W+L+   K K L+W A   A+P    L  R ++
Sbjct: 908  TSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHIS 967

Query: 300  PSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD---WIKLGISGSR 356
            PS  C RCG  + T  H    C F+  +W+            ++  D    +K  I    
Sbjct: 968  PSAACHRCGAPEST-THLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPP 1026

Query: 357  SSIFLAGL--WWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAFNGEENPPHSDRLV 414
            + +  A L  W    +  L  +    L           A  +A        N  H    +
Sbjct: 1027 TGVTSAALFPWICGIYGKLGTMTRAILDAL--------AWQSAQRCLPKTRNVVHPISQL 1078

Query: 415  KWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGL--FISGFSGLIPNSADILLAELT 472
                  +  F   VD + I      G G V +++  L    + +S         L AE  
Sbjct: 1079 PVLRSGYFCF---VDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALSAEAW 1135

Query: 473  AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLLNDRNISLHH 532
            AI   L     L   ++M  SDS   V+ + ++     IY  L++     ++  ++  + 
Sbjct: 1136 AIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNF 1195

Query: 533  TLREGNQCADFFAK 546
              R  N  AD  AK
Sbjct: 1196 ISRSANAIADATAK 1209


>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1382

 Score =  148 bits (373), Expect = 5e-34
 Identities = 137/577 (23%), Positives = 235/577 (39%), Gaps = 45/577 (7%)

Query: 4    RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG 63
            R+  W +R L++ G  T+  +V  +IP+Y M    +P +IC+ +     +  W     K 
Sbjct: 790  RVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKK 849

Query: 64   -IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
             +H  +W  +S PK +GG+  R     N ++LG+  W ++   + L   +L  +Y    +
Sbjct: 850  KMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSS 909

Query: 123  TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSFWFS-NW---------NSLSPI 172
               A+     S TW S++  + +L  G  W +G G +   FS NW          +LSP 
Sbjct: 910  FWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPF 969

Query: 173  GNYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWS 232
                   D     L   D     G+  R L+   P D+   I  I    + +  D   W 
Sbjct: 970  PT-----DATVSCLMNEDARCWDGDLIRSLF---PVDIAKEILQIPISRHGD-ADFASWP 1020

Query: 233  QNKNGTYTTKSGFNWLITSRVPAIEP---------ILHA---WSWIWRLKVPEKYKFLIW 280
             +K G Y+ +S +N   +    A +          +L +   W  +W++  P K K  +W
Sbjct: 1021 HDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLW 1080

Query: 281  LACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI------GFT 334
             A    + T   L  R +  +  C  C   D+T  H    C F+  IW++I         
Sbjct: 1081 RAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLG 1139

Query: 335  SNDFVTTAT-TYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISA 393
             N F T     +D++K G S   +++     W +W  RN    NN T+   R+   I+S 
Sbjct: 1140 RNGFSTMRQWIFDFLKRG-SSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSY 1198

Query: 394  ADAA---NSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAG 450
             D     N+     +   ++  + +W       +++N D +   +    G G ++R++ G
Sbjct: 1199 VDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTG 1258

Query: 451  LFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYH 510
              +   S +I +     LAE  AI + L L  +  +  I+  SD L  +  I        
Sbjct: 1259 KCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRS 1318

Query: 511  IYAALIQNIKDLLNDRNI-SLHHTLREGNQCADFFAK 546
                +I++IK L +   + S  H  R  N  A   A+
Sbjct: 1319 GVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLAR 1355


>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  147 bits (371), Expect = 8e-34
 Identities = 126/540 (23%), Positives = 227/540 (41%), Gaps = 44/540 (8%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
            ++++L+SW ++ L++ G+  +  +V  ++P + M    LP+  C ++     +F W    
Sbjct: 620  LKSKLSSWFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSAND 679

Query: 61   N-KGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
            + + IH ++W+K+ LPK  GGL  R     N +LL K  W ++Q  + L+  L+ ++Y  
Sbjct: 680  HQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFP 739

Query: 120  GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNW---NSLSPIGNY 175
                L +   +R S  W SI+  +++L  G   R+G+G S   W   W   N L      
Sbjct: 740  VGEFLDSDVGSRPSFGWRSILHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIK 799

Query: 176  VPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNK 235
             P+I+V  L   + D         ++     P DV     N       +++D  IW  NK
Sbjct: 800  NPIINVDLLVSDLIDYEKRDWRLDKLEEQFFPDDVVKIRENRPVV---SLDDFWIWKHNK 856

Query: 236  NGTYTTKSGFNWLITSR---VPAIEPILH-----AWSWIWRLKVPEKYKFLIWLACQNAV 287
            +G Y+ K G+ WL +++     AIE ++        + +W+L+   K K  +W     A+
Sbjct: 857  SGDYSVKLGY-WLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAI 915

Query: 288  PTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK-------IGFTSNDFVT 340
            P + LL +R M     C  CG E E+  H +  C F + +W         +GF       
Sbjct: 916  PVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYA 975

Query: 341  TATTY----DWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIIS---- 392
                +    D +K  +   RS  ++  +W +W++RNL     +  ++      +      
Sbjct: 976  NLYHFLINRDNLKWPVELRRSFPWI--IWRIWKNRNLFFFEGKRFTVLETILKVRKDVED 1033

Query: 393  --AADAANSAFNGEE--------NPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYG 442
              AA         E         +P +   +V+W          NV  S        G  
Sbjct: 1034 WFAAQVVEKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTDWVKCNVGLSWSRRNRLAGVA 1093

Query: 443  GVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLI 502
             VLRN  G  +        N +  L A+  +I   ++ +   +VN ++   ++ + V +I
Sbjct: 1094 WVLRNDRGNVLMHSRRAFSNISSFLEAQFLSIVWAVESMVSHHVNRVVFGVEAAVLVGVI 1153


>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  145 bits (367), Expect = 2e-33
 Identities = 132/570 (23%), Positives = 236/570 (41%), Gaps = 28/570 (4%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
            +Q+R+  W  + L+K G+  +  SV  ++P Y M    LP+ I   +      F W    
Sbjct: 556  LQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG 615

Query: 60   TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
             ++G+H + W K+   K+ GGL  R   + N++LL K +W ++ + + L+  +   +Y  
Sbjct: 616  DSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFR 675

Query: 120  GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPV 178
              N L +  +   S  W S+I A++++  G   R+GSG+S S W   W            
Sbjct: 676  KSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYG 735

Query: 179  IDVHDLQLSVRDVLSAPGNHARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNG 237
              + D  L V+ ++ +  N   + L   L    +  + +     N N+ED L W   K G
Sbjct: 736  GSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAG 795

Query: 238  TYTTKSGFNWL---ITSRVPAIEPILHAW-SWIWRLKVPEKYKFLIWLACQNAVPTLSLL 293
             YT KSG++     +      I P L    ++IW+++ P K +  +W      VP    L
Sbjct: 796  NYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENL 855

Query: 294  YHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIG-------FTSNDFVTTATTYD 346
              R +     C  CG  +E+  H +  C  ++ IW           F SN   T      
Sbjct: 856  RKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLF 915

Query: 347  WIKLGISGSRSSIFLAGLWWVWRHRNLMCLNN---ETLSLFRLCNNIISAADAANSAFNG 403
            W     SG  S+ +   +W++W+ RN     N   + + +  L      +   A    + 
Sbjct: 916  W--RIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHS 973

Query: 404  EENPPHS-DRLVK----WNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSG 458
            E +   S D  ++      +     F   +DGS   +   +G G    +S G   +  + 
Sbjct: 974  ERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAA 1033

Query: 459  LIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDT--PRYHIYAALI 516
             +  S   L  E+ A+   +K +   +   +  ++D    V ++++ T  P + +Y   +
Sbjct: 1034 NVRRSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEEL 1093

Query: 517  QNIKDLLNDRNISLHHTLREGNQCADFFAK 546
            Q+ ++     N SL    R  N  AD  A+
Sbjct: 1094 QSDREEFT--NFSLSLISRSANVKADKLAR 1121


>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  145 bits (365), Expect = 4e-33
 Identities = 145/572 (25%), Positives = 242/572 (41%), Gaps = 50/572 (8%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
            ++ R  SW  R L+  G+  L  +VL+S+PSY M    LP ++C  I      F W    
Sbjct: 713  IRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKP 772

Query: 61   NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
            +K  +  V+W K++LP N GGL  R        +  KL W +++  + L   +L  KY  
Sbjct: 773  DKRKMAWVSWDKLTLPINEGGLGFR-------EIEAKLSWRILKEPHSLLSRVLLGKYCN 825

Query: 120  GHNTLYASAN-NRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVP 177
              + +  SA+ + +S  W  I+  +++L+ G  W IG G S + W   W  LSP     P
Sbjct: 826  TSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAW--LSPSSPQTP 883

Query: 178  V---------IDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDA 228
            +         + VHDL     DV S    +   +  +LP   E+ I  I       ++D+
Sbjct: 884  IGPPTETNKDLSVHDL--ICHDVKSW---NVEAIRKHLP-QYEDQIRKITINALP-LQDS 936

Query: 229  LIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVP 288
            L+W   K+G YTTK+G+     +  PA +   +    IW++    K K  +W A + A+P
Sbjct: 937  LVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALP 996

Query: 289  TLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYDWI 348
                L  R++     C RCG + E+ +H +  C ++K +W+      N    +  T+  +
Sbjct: 997  VGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPYAKKVWELAPVLFN---PSEATHSSV 1052

Query: 349  KLGISGSRSSIFLAG------------LWWVWRHRNLMCLNNETLSLFRLCNNIISAADA 396
             L +  ++  + L              LW +W+ RN +  +N + S   L    I  A A
Sbjct: 1053 ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARA 1112

Query: 397  ANSAFNGEENP-PHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISG 455
               A     +P P SD      N       ++   +  G     G G  L++   + I  
Sbjct: 1113 WMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSG---YCGMGWFLQDPYKVKIKE 1169

Query: 456  FSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL 515
                       L+AE  A+H  L       V ++  +SD    ++L+ N          L
Sbjct: 1170 NQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLL-NSGKSIVELRGL 1228

Query: 516  IQNIKDL-LNDRNISLHHTLREGNQCADFFAK 546
            + +I++L ++  ++      R  N  AD  AK
Sbjct: 1229 LHDIRELSVSFTHLCFFFIPRLSNVVADSLAK 1260


>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
          Length = 851

 Score =  144 bits (362), Expect = 9e-33
 Identities = 111/403 (27%), Positives = 178/403 (43%), Gaps = 32/403 (7%)

Query: 1   MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
           ++ R ASW  + L+  G+  L  SV  ++P Y M    LPQ I   I+    NF W   +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452

Query: 61  NK-GIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
           NK GI  V WK++   K  GGL  R   + N +LL K  W ++Q  N L+  ++  +Y  
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFK 512

Query: 120 GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSFWFSNWNSLSPIGNYVP-- 177
            ++ + A   ++ S  WSS++    +L+ G  + IG G +          + + ++ P  
Sbjct: 513 DNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKT----IRLGIDNVVDSHPPRP 568

Query: 178 -VIDVHDLQLSVRDVLSAPGNHARV-----LYTNLPPDVENHINNIHTQFNDNIEDALIW 231
            + D     LS+ ++    G H+R      L T +     ++I  I+        D LIW
Sbjct: 569 LLTDEQHNGLSLDNLFQHRG-HSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSK-TDRLIW 626

Query: 232 SQNKNGTYTTKSGFNWLIT----SRVPAI---EPILHAWSWIWRLKVPEKYKFLIWLACQ 284
           S N  G YT +SG+ WL T    + +P +      +   + IW L +  K K  +W    
Sbjct: 627 SYNSTGDYTVRSGY-WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILS 685

Query: 285 NAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQ-------KIGFTSND 337
            A+PT   L  R M   P C RC  E+E+  H +  C F+   W+       +    SN+
Sbjct: 686 KALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNN 745

Query: 338 FVTTATTYDWI--KLGISGSRSSIFLAGLWWVWRHRNLMCLNN 378
                +    +     I+ S+  I    LW +W+ RN +  NN
Sbjct: 746 IEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNN 788


>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
          Length = 1557

 Score =  144 bits (362), Expect = 9e-33
 Identities = 105/383 (27%), Positives = 171/383 (44%), Gaps = 23/383 (6%)

Query: 4    RLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG 63
            ++  W    L+  G+  L  +V+ +IP Y M    LP+++C+ +   TRNF W     K 
Sbjct: 1144 KILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKR 1203

Query: 64   -IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHN 122
              H   WK ++  K++GGL  +  R  N +LL +  W ++ + + L   +L  KY    +
Sbjct: 1204 KTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGS 1263

Query: 123  TLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSS-SFWFSNWNSLSPIGNYVPVIDV 181
             +  S    +SP W +I     ++K G  WRIG+G S   W   W  L    +  P+   
Sbjct: 1264 IVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPW--LPRDLSRRPITPK 1321

Query: 182  HDLQLS-VRDVLSAPG--NHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGT 238
            ++ ++  V D++   G  +  ++    LP DVE  I  + T   D  ED + W  +K G 
Sbjct: 1322 NNCRIKWVADLMLDNGMWDANKINQIFLPVDVE-IILKLRTSSRDE-EDFIAWHPDKLGN 1379

Query: 239  YTTKSGF----NWL--ITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSL 292
            ++ ++ +    NW     S   +   I  AW  +W+  VP K K   W A  N +PT   
Sbjct: 1380 FSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDN 1439

Query: 293  LYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTY----DWI 348
               R++  S  C  CG E E  MH +  C  +K +W  +   SND       +     W+
Sbjct: 1440 KKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMK-ESNDLSLRMDDHLLGPSWL 1498

Query: 349  --KLG-ISGSRSSIFLAGLWWVW 368
              +L  +      +FL  LW +W
Sbjct: 1499 FNRLALLPDHEQPMFLMVLWRIW 1521


>UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis thaliana]
          Length = 575

 Score =  143 bits (361), Expect = 1e-32
 Identities = 135/558 (24%), Positives = 225/558 (40%), Gaps = 48/558 (8%)

Query: 28  SIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTN-KGIHLVNWKKISLPKNIGGLSIRAA 86
           ++P+Y M    LP+ +C  I     +F WR     KG+H   W  +S  K  GG+  +  
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 87  REANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNIL 146
              N +LLGK +W M+     L   +  ++Y    + L A   +R S  W SI  ++ IL
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 147 KDGYTWRIGSGSS-SFWFSNWNSLSPIG-----NYVPVIDVHDLQ--LSVRDVLSAPGNH 198
           + G    +G+G     W   W    P         VP  +   +   L V D++   G  
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181

Query: 199 ARV-LYTNLPPDVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRV---- 253
            R  +   L P+VE  +          I D+  W    +G YT KSG+ W++T  +    
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQIINKRS 240

Query: 254 -------PAIEPILHAWSWIWRLKVPEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTR 306
                  P++ PI   +  IW+ +   K +  +W    N++P    L +R ++    C R
Sbjct: 241 SPQEVSEPSLNPI---YQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297

Query: 307 CGEEDETFMHCVRDCCFSKDIWQ------KIGFTSNDFVTTATTYDWIKLGISGSR---- 356
           C    ET  H +  C F++  W        +G    D +     Y    LG    +    
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSI-YVNLYWVFNLGNGNPQWEKA 356

Query: 357 SSIFLAGLWWVWRHRNLMCLNNETLS----LFRLCNNIISAADAANSAFNGEENPPHSDR 412
           S +    LW +W++RN +       +    L R  +++        +   G +   +   
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416

Query: 413 LVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELT 472
             +W    HQ    N D +      R G G VLRN  G      +  +P    +L AEL 
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELE 476

Query: 473 AIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAAL---IQNIKDLLND-RNI 528
           A+   +  ++    N ++  SDS + + ++ ND     I+ +L   IQ+++ LL+    +
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEILNND----EIWPSLKPTIQDLQRLLSQFTEV 532

Query: 529 SLHHTLREGNQCADFFAK 546
                 REGN  A+  A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550


>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1344

 Score =  140 bits (353), Expect = 1e-31
 Identities = 105/438 (23%), Positives = 196/438 (43%), Gaps = 27/438 (6%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
            +Q+RL  W  + L++ G+  L  S+  ++P Y M    LP+N+C  +     +F W    
Sbjct: 750  LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809

Query: 61   NKG-IHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTG 119
             K  IH ++W++++LPK+ GG   +  +  N +LL K  W ++Q    L+  +  ++Y  
Sbjct: 810  QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869

Query: 120  GHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSSF-----WFSNWNSLSPIGN 174
              + L A+  +R S  W SI+  + +L  G    IG+G  +F     W  + ++  P+ N
Sbjct: 870  NSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPL-N 928

Query: 175  YVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLP-PDVENHINNIHTQFNDNIEDALIWSQ 233
                I+V DL++S     ++   +  +L    P  DVE  +      F    ED+  W  
Sbjct: 929  RRRFINV-DLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK---EDSFCWLH 984

Query: 234  NKNGTYTTKSGFNWLITS------RVPAIEPILHA-WSWIWRLKVPEKYKFLIWLACQNA 286
            + NG Y+ K+G+ +L         +   ++P +++ +  IW L    K +  +W A   A
Sbjct: 985  SHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGA 1044

Query: 287  VPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDFVTTATTYD 346
            +P    L  R +     C  C  E+ET  H + +C  ++ +W     +S     + + Y 
Sbjct: 1045 IPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1104

Query: 347  WIKLGISGSRSS------IFLAG--LWWVWRHRNLMCLNNETLSLFRLCNNIISAADAAN 398
             +   I  ++ +       F++   LW++W++RN +    +      L +    A     
Sbjct: 1105 NMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWF 1164

Query: 399  SAFNGEENPPHSDRLVKW 416
            SA    +N     ++ KW
Sbjct: 1165 SAQTHMQNDEKHLKITKW 1182


>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score =  139 bits (350), Expect = 2e-31
 Identities = 115/482 (23%), Positives = 204/482 (41%), Gaps = 48/482 (9%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGT- 59
            +Q+ L+ W ++ L++ G+  L  S+  ++P Y M    LP+ +C  +     +F W    
Sbjct: 724  LQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSME 783

Query: 60   -TNKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYT 118
             +NK IH +  KK++LPK++GG   +  +  N +LL K  W +   S  +   +  ++Y 
Sbjct: 784  FSNK-IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYF 842

Query: 119  GGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSG-SSSFWFSNW----NSLSPIG 173
               + L A    R S TW SI+  + +L  G    IG+G  ++ W   W    +S  P+ 
Sbjct: 843  MNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPM- 901

Query: 174  NYVPVIDVHDLQLSVRDVLSAPGNHARVLYTNLPPDVENHINNIHTQFNDNIEDALIWSQ 233
            N   ++++H     + D L+   N  ++       DV+     +H +   + ED+  W+ 
Sbjct: 902  NLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQ---LIMHQRPLISSEDSYCWAG 958

Query: 234  NKNGTYTTKSGFN----------WLITSRVPAIEPILHAWSWIWRLKVPEKYKFLIWLAC 283
              NG YT KSG+           +      P++ P+   +  +W L+   K K  +W A 
Sbjct: 959  TNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPL---FDKVWSLETVPKIKVFMWKAL 1015

Query: 284  QNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIW-------QKIGFTSN 336
            + A+     L  R +  +  C  C EE ET  H +  C F++ +W          GF ++
Sbjct: 1016 KGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTS 1075

Query: 337  DFVT-TATTYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLS-------LFRLCN 388
             F        +    GI     ++    LW +W++RN        L+        +  CN
Sbjct: 1076 IFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECN 1135

Query: 389  NIISAADAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNS 448
              I+A + ++   +  E+        KWN     +   N+  +        G   VLR+S
Sbjct: 1136 LWINAQEKSSGGVSPSEH--------KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDS 1187

Query: 449  AG 450
             G
Sbjct: 1188 MG 1189


>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  135 bits (341), Expect = 3e-30
 Identities = 136/592 (22%), Positives = 229/592 (37%), Gaps = 53/592 (8%)

Query: 1    MQTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTT 60
            ++ R   W    L+  G+  +  ++  ++P Y M    LP  IC+ I+     F W    
Sbjct: 1134 VKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG--- 1190

Query: 61   NKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG 120
                           +N G L  +   + N +LL K  W ++ +   L   L    Y   
Sbjct: 1191 --------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPN 1236

Query: 121  HNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGSSS-FWFSNW-NSLSPIGNYVPV 178
               L A+    +S  W+SI   K +L+ G   R+G G ++  W   W  +L P     P+
Sbjct: 1237 TTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPI 1296

Query: 179  IDVHDLQLSVRDVLSAPGNH-ARVLYTN-LPPDVENHINNIHTQFNDNIEDALIWSQNKN 236
            +D     + V D+          V++   L P+ +    +++   N    D+  W+  +N
Sbjct: 1297 LDE---DMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLS-NYAARDSYKWAYTRN 1352

Query: 237  GTYTTKSGFNWLITSRVPAIEPILHAWSW-------IWRLKVPEKYKFLIWLACQNAVPT 289
              YT +SG+ W+ T      E I++           IWRLK+  K K  IW     A+ T
Sbjct: 1353 TQYTVRSGY-WVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALST 1411

Query: 290  LSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFT-SNDFVTTATTYDWI 348
             + L +R++   P C RC   DET  H +  C +++ +W+   F+ SN    T    + I
Sbjct: 1412 TTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENI 1471

Query: 349  KLGISGSRSS--IFLAGL------WWVWRHRNLMCLNNETLSLFRLCNNIISAA------ 394
            +L + G ++     L GL      W +W+ RN           +++       A      
Sbjct: 1472 RLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVET 1531

Query: 395  ---DAANSAFNGEENPPHSDRLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGL 451
               D A S    + N     R  +W++        N D   +     T  G +LR+  G 
Sbjct: 1532 MVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGR 1591

Query: 452  FISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHI 511
             +      +  S   L AE       L++V       +    D+L   NLI N T  +H+
Sbjct: 1592 VLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLI-NKTEDHHL 1650

Query: 512  YAALIQNIKDLLNDRNI-SLHHTLREGNQCADFFAKFGANSDAALVVHQSPP 562
               L+ +I+  +      S+ +  RE N  AD   K+  +  +       PP
Sbjct: 1651 LETLLYDIRFWMTKLPFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPP 1702


>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score =  133 bits (334), Expect = 2e-29
 Identities = 125/488 (25%), Positives = 204/488 (41%), Gaps = 35/488 (7%)

Query: 43   ICDSIDQTTRNFIWRGTT-NKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDM 101
            I   +     NF W+    + GIH + W K+  P + GGL  R   E N  LL K +W +
Sbjct: 694  IRSKLSSVVANFWWKTREESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRL 753

Query: 102  VQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNILKDGYTWRIGSGS-SS 160
            ++  N L   +L  +Y    + +     NR S  W SI+ AK +L  G    IGSG  + 
Sbjct: 754  IRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTR 813

Query: 161  FWFSNWNSLSPIGNYVPVIDVHDLQLSVRDVLSAPGNHARV--LYTNLPPDVENHINNIH 218
             W   W    P      ++++ D  L V D++       ++  L   + P     I  I 
Sbjct: 814  VWEDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIR 873

Query: 219  TQFNDNIEDALIWSQNKNGTYTTKSGFNWLI------TSRVPAIEPILHA-WSWIWRLKV 271
                   +D   WS  K+G YT KSG+ W        T  +P   P + A  + +W++K 
Sbjct: 874  PSRTYKSDD-FSWSFTKSGNYTVKSGY-WAARDLSRPTCDLPFQGPSVSALQAQVWKIKT 931

Query: 272  PEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKI 331
              K+K   W      + T   L+ R +    +C RCG E+E+  H +  C  S+ IW   
Sbjct: 932  TRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALS 991

Query: 332  GFTSNDFVTTATT----YDWI-----KLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLS 382
               S++++    +    +D++     +  I+     IF   LW++W+ RN     N   S
Sbjct: 992  PIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIES 1051

Query: 383  LFRLCNNIISAADA---ANSAFNGEENPPHSDRLVKWN---NRNHQDFILNVDGSCIGTP 436
               + +  I  A+    ANS     E PP   ++V  N    RN    +   D S     
Sbjct: 1052 PQVILDFAIQEANVWKQANSKEVATEYPP--PQVVPANLPPTRN----VCQFDASWHLKD 1105

Query: 437  PRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSL 496
              +G+G VL +   + + G       S   L AE+ ++   ++ +  L V++    SDS 
Sbjct: 1106 TLSGHGWVLVDQDIVLLLGLKS-ARKSLSPLHAEVDSLLWAMECMISLGVSDCSFASDSA 1164

Query: 497  LAVNLIAN 504
              ++L+ N
Sbjct: 1165 DFISLLEN 1172


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,064,389,182
Number of Sequences: 2790947
Number of extensions: 47362341
Number of successful extensions: 107052
Number of sequences better than 10.0: 423
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 106212
Number of HSP's gapped (non-prelim): 572
length of query: 581
length of database: 848,049,833
effective HSP length: 133
effective length of query: 448
effective length of database: 476,853,882
effective search space: 213630539136
effective search space used: 213630539136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)