BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.5 + phase: 0
(162 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop... 92 6e-18
UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop... 91 1e-17
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo... 90 2e-17
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa] 89 3e-17
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana] 89 5e-17
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops... 88 7e-17
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or... 88 9e-17
UniRef100_Q7XSZ1 OSJNBb0056F09.5 protein [Oryza sativa] 87 1e-16
UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabid... 84 1e-15
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense] 82 5e-15
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana] 80 2e-14
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa] 79 5e-14
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa] 78 7e-14
UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa] 78 9e-14
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana] 77 2e-13
UniRef100_Q02900 Orf 1 [Arabidopsis thaliana] 75 8e-13
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa] 74 1e-12
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop... 74 2e-12
UniRef100_Q69FA7 Retrovirus-related pol polyprotein [Phaseolus v... 74 2e-12
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa] 72 4e-12
>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 91.7 bits (226), Expect = 6e-18
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 18/144 (12%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +I+ DLEN+ V + DED+AILLL ALP++F+ KDT+ Y + +TL+EV AA+ +
Sbjct: 139 EFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYS 198
Query: 65 KEL----------TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKL 114
KEL +++ L + NE + G G+G +G SK K C+ C +
Sbjct: 199 KELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKK----KPGCWTCGEE 254
Query: 115 GHFKRDCPEDNE---SSAQVVSEE 135
GHF+ CP N+ +QVV E
Sbjct: 255 GHFRSSCPNQNKPQFKQSQVVKGE 278
>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 90.9 bits (224), Expect = 1e-17
Identities = 52/150 (34%), Positives = 87/150 (57%), Gaps = 10/150 (6%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ KDT+ YGK T+ L+E+ A
Sbjct: 132 ENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEITGA 190
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ D + G S + R N+ S+S +++K C+ C K
Sbjct: 191 IRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVCGK 249
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALV 143
GHFK+ C E + + + E G++ ++
Sbjct: 250 EGHFKKQCYVWKEKNKKGNNSEKGESSNVI 279
>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
Length = 1328
Score = 89.7 bits (221), Expect = 2e-17
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
+ L FN ++ L N+ V++E+EDKAILLL +LP S+++ T+L+GK T+ L++V +
Sbjct: 119 LSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTS 177
Query: 61 AL------RTKELTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYK-CFKCHK 113
AL R K + + L + S N G G RG SK+ +K + + C+ C++
Sbjct: 178 ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 237
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
GHFKRDCP + + ++ D A +V
Sbjct: 238 PGHFKRDCPNPRKGKGETSGQKNDDNTAAMV 268
>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
Length = 382
Score = 89.4 bits (220), Expect = 3e-17
Identities = 47/116 (40%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+ +GK+ TV EE+ ++L ++
Sbjct: 126 FNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKTEEIISSLLARD 184
Query: 67 LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP 122
L +SK A + ++G S+ + G SKS K +C+KCH+ GH +R+CP
Sbjct: 185 LRRSKKNEATKASQGKSLLVKDKHDH-EAGVSKSKEKGA-RCYKCHEFGHIRRNCP 238
>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 88.6 bits (218), Expect = 5e-17
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGK-EGTVTLEEVQAALRT 64
EF +++ DLEN V + DED+AILLL +LP+ F+ KDT+ YG T++++EV AA+ +
Sbjct: 137 EFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYS 196
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
KEL + K +R + G+S K +GN+G S+S +K C+ C
Sbjct: 197 KELELGSNKKSIRGQAEGLYVKDKPETRGMSEQK----EKGNKGRSRSRSKGWKGCWICG 252
Query: 113 KLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+ GHFK CP + + + G G EG G ++
Sbjct: 253 EEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYV 297
>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 88.2 bits (217), Expect = 7e-17
Identities = 62/162 (38%), Positives = 91/162 (55%), Gaps = 21/162 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + +F K++ DLEN++V + DED+AI+LL +LPR F+ K+T+ Y K T+ LEE+ +A
Sbjct: 140 ENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEITSA 198
Query: 62 LRTKEL---TKSKDLRADED-----NEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
+R+K L K L+ + D + G S ++G G + N+ SKS K C+ C K
Sbjct: 199 IRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNK-NKSRSKSKGAGK-TCWICGK 256
Query: 114 LGHFKRDCPEDNESSAQVVSEEYG----------DAGALVVS 145
GHFK+ C E + Q + E G DA ALVVS
Sbjct: 257 EGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVS 298
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
Length = 556
Score = 87.8 bits (216), Expect = 9e-17
Identities = 48/116 (41%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP SFE T+ +GK+ TV EE+ ++L ++
Sbjct: 257 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKD-TVKTEEIISSLLARD 315
Query: 67 LTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP 122
L +SK A E ++ S+ G SKS K +C+KCH+ GH +R+CP
Sbjct: 316 LRRSKKNEAMEASQAESLLV-KAKHDHEAGVSKSKEKGA-RCYKCHEFGHIRRNCP 369
>UniRef100_Q7XSZ1 OSJNBb0056F09.5 protein [Oryza sativa]
Length = 371
Score = 87.0 bits (214), Expect = 1e-16
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+++GK+ T+ EE+ ++L ++
Sbjct: 146 FNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTLMHGKD-TIKTEEIISSLLARD 204
Query: 67 LTKSKDLRADEDN--EGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCP-- 122
L +SK A E + E L V + G S + G +C+KCH+ GH +R+CP
Sbjct: 205 LRRSKKNEAMEASQAESLLVKAKHDHEAGVLKSKEKG----ARCYKCHEFGHIRRNCPLL 260
Query: 123 ---EDNESSAQVVSEEYGDAGALVVSCWEEDEGE 153
+D +S ++ + +++ E GE
Sbjct: 261 KKRKDGIASLAARGDDSDSSSHEILTVSNEKSGE 294
>UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 84.0 bits (206), Expect = 1e-15
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K+T+ YG+EG + L++V +A
Sbjct: 105 ENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDVISA 163
Query: 62 LRTKEL-TKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRD 120
++KEL + + EGL V +G RG+ G + + K C+ C K GHFKR
Sbjct: 164 AKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKST--EGKKVCWICGKEGHFKRQ 220
Query: 121 C---PEDNESS----AQVVSEEYGDAGALVVSCWEEDEGE 153
C E N+++ +V ++ D LV S EG+
Sbjct: 221 CYKWLEKNKANGAGETALVKDDAQDLVGLVASEVNMSEGK 260
>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 82.0 bits (201), Expect = 5e-15
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
+ L N ++ L N+ V++E+EDK I+LL +LP S+++ T+L+GK+ ++ L++V +
Sbjct: 120 LSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQLKDVTS 178
Query: 61 ALRTKELTKSKDLRADE----DNEGLSV--SKGNGGGRGNRGSSKSGNKDKYK-CFKCHK 113
AL E + K + ++ G S S N G G RG SK +K K + C+ C +
Sbjct: 179 ALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQ 238
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
GHFKRDCP + ++ D A +V
Sbjct: 239 PGHFKRDCPNPKRGKGESSGQKNDDNTAAMV 269
>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 80.1 bits (196), Expect = 2e-14
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTV-TLEEVQAALRT 64
EF I+ DLEN+ V + DED+AILLL +LP+ F+ KDT+ Y TV +L+EV AA+ +
Sbjct: 139 EFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEVAAAIYS 198
Query: 65 KEL---TKSKDLRAD---------EDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCH 112
+EL + K ++ +N G S K G G+ ++ SK G C+ C
Sbjct: 199 RELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRG------CWICG 252
Query: 113 KLGHFKRDCPEDNE 126
+ GH K CP N+
Sbjct: 253 EDGHLKSTCPNKNK 266
>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
Length = 1181
Score = 78.6 bits (192), Expect = 5e-14
Identities = 54/172 (31%), Positives = 86/172 (49%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ +++D A++LLC+LP S+ +F+DT+LY ++ T+TL+EV
Sbjct: 118 MDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVYD 176
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ ++ S +G RG S
Sbjct: 177 ALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSC 236
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + KC KL G + ++ E A VV++E DA LV
Sbjct: 237 KYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLV 288
>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
Length = 1211
Score = 78.2 bits (191), Expect = 7e-14
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F KI+ DLE++EV+ ++ED ++LLC+LP S+ +F+DT+LY + T+TL+EV
Sbjct: 118 MDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVYD 176
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ + ++ S +G RG S
Sbjct: 177 ALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSC 236
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + +C KL G + ++ E A VV++E DA LV
Sbjct: 237 KYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLV 288
>UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]
Length = 1241
Score = 77.8 bits (190), Expect = 9e-14
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 32/173 (18%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ ++ED ++LLC+LP S+ +F+DT+LY ++ T+TL+EV
Sbjct: 27 MDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRD-TLTLKEVYD 85
Query: 61 ALRTKELTKSKDLRADEDN---EGLSV-----SKGNGGGRGNRGSS----KSGNKDKYK- 107
AL KE K K + ++ N EGL V K ++ SS +S ++ +YK
Sbjct: 86 ALHAKEKMK-KMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS 144
Query: 108 CFKCHKLGHFKRDC-----------------PEDNESSAQVVSEEYGDAGALV 143
C C + GH +C ++ E A VV++E DA LV
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLV 197
>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
Length = 1356
Score = 76.6 bits (187), Expect = 2e-13
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 22/177 (12%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
+ + EF +I+ +L ++E+Q+++E +AIL+L +LP S K T+ YG + T+T+++V ++
Sbjct: 143 QNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TLTVQDVTSS 201
Query: 62 LRT--KELTKSKDLRADE------DNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHK 113
++ +EL ++ DL + G + + N G +G S+S +K K C+ C K
Sbjct: 202 AKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVPCWYCKK 261
Query: 114 LGHFKRDC-------PEDNESSAQVVSEEYGDAGALVVS------CWEEDEGEGSHL 157
GH K+DC + + A V++E+ + AL V+ W D G SH+
Sbjct: 262 EGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHM 318
>UniRef100_Q02900 Orf 1 [Arabidopsis thaliana]
Length = 560
Score = 74.7 bits (182), Expect = 8e-13
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 2 EQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAA 61
E + EF KI+ +L ++E+ + +E +AIL L L + K T+ YG + ++L++V ++
Sbjct: 139 ENVNEFLKIVAELSSLEINVVEEVRAILFLNGLSSRYSQLKHTLKYGNKA-LSLQDVISS 197
Query: 62 LRT--KELTKSKD--------LRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYKCFKC 111
R+ +EL + K+ L +E L+ ++ G RG SKS + K C+ C
Sbjct: 198 ARSLERELDEQKETDKNTSTVLYTNERGRPLTRNQNQNKGGQGRGRSKSNSNAKLTCWYC 257
Query: 112 HKLGHFKRDC-------PEDNESSAQVVSEEYGDAGALVVS------CWEEDEGEGSHL 157
K GH K+DC +N A V++E+ + AL V+ WE D G SH+
Sbjct: 258 KKEGHVKKDCFARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWELDSGCPSHM 316
>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
Length = 1280
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 30/172 (17%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE+IEV+ ++ED ++LLC+LP S+ +F+DT+LY + T+ L+EV
Sbjct: 153 MDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVYD 211
Query: 61 ALRTKELTK----------------------SKDLRADEDNEGLSVSKGNGGGRGNRGSS 98
AL KE K K+ + ++ S +G RG S
Sbjct: 212 ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271
Query: 99 KSGNKDKYKCFKCHKL-------GHFKRDCPEDNESSAQVVSEEYGDAGALV 143
K +D + +C KL G + ++ E A VV++E D LV
Sbjct: 272 KYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLV 323
>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 73.6 bits (179), Expect = 2e-12
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 6 EFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYG-KEGTVTLEEVQAALRT 64
EF +I+ DLEN V + DED+AILLL +LP+ F+ +DT+ YG T++L+EV AA+ +
Sbjct: 139 EFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYS 198
Query: 65 KELTKSKDLRADEDN-EGLSV-----SKGNGGGRGNRGS---SKSGNKDKYKCFKCHKLG 115
KEL + ++ + EGL V ++G RGN + S+S ++ K C+ C G
Sbjct: 199 KELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGCWIC---G 255
Query: 116 HFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGSHL 157
+E++ VSE + W D G H+
Sbjct: 256 ESSNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTGCSYHM 297
>UniRef100_Q69FA7 Retrovirus-related pol polyprotein [Phaseolus vulgaris]
Length = 324
Score = 73.6 bits (179), Expect = 2e-12
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
FN+++ L N++V+ EDED A++L+ +LP FE + T+L+GK+ V+L+ V +AL + E
Sbjct: 105 FNQLVAYLLNLDVKFEDEDLALMLVSSLPDEFEHLETTLLHGKD-NVSLDVVCSALYSHE 163
Query: 67 LTKSKDLRA-DEDNEGLSVSKG--NGGGRGNRGSSKSGNK--DKYKCFKCHKLGHFKRDC 121
L K ++ +E V++G + RG KS + K +C CH+ GH+K+DC
Sbjct: 164 LRKQDKMKTKSTTSEEALVTRGGQQSQTKERRGMCKSKGRVVAKDECAFCHEKGHWKKDC 223
Query: 122 PE 123
P+
Sbjct: 224 PK 225
>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
Length = 1243
Score = 72.4 bits (176), Expect = 4e-12
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 42/178 (23%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
M+ L+ F +I+ DLE++EV+ +++D ++LLC+LP S+ +F+ T+LY ++ T+TL+EV
Sbjct: 118 MDHLSAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRD-TLTLKEVYD 176
Query: 61 ALRTKELTKSKDLRADEDN---EGLSVSKGNGGGRGNRGSSKSGNKDK------------ 105
A KE K K + ++ N EGL V GR + ++K+ ++DK
Sbjct: 177 AFHAKEKMK-KMVTSEGSNSQAEGLVVR-----GRQQKKNTKNQSRDKSSSSYRGRTKSR 230
Query: 106 --YK-CFKCHKLGHFKRDC-----------------PEDNESSAQVVSEEYGDAGALV 143
YK C C + GH +C ++ E A VV++E DA LV
Sbjct: 231 GRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLV 288
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.310 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,859,451
Number of Sequences: 2790947
Number of extensions: 12500595
Number of successful extensions: 53571
Number of sequences better than 10.0: 1140
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 51982
Number of HSP's gapped (non-prelim): 1752
length of query: 162
length of database: 848,049,833
effective HSP length: 117
effective length of query: 45
effective length of database: 521,509,034
effective search space: 23467906530
effective search space used: 23467906530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC134049.5