BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC130802.9 + phase: 0 /pseudo
         (937 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                  270  2e-70
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                  268  6e-70
UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]                  267  1e-69
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]                  267  1e-69
UniRef100_Q7XV90 OSJNBb0012E08.6 protein [Oryza sativa]               266  3e-69
UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]              261  7e-68
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop...   258  8e-67
UniRef100_Q75IK3 Putative polyprotein [Oryza sativa]                  257  1e-66
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza...   257  1e-66
UniRef100_Q7XP09 OSJNBb0013J13.11 protein [Oryza sativa]              256  2e-66
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...   247  1e-63
UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]                              245  5e-63
UniRef100_Q02902 Orf 3 [Arabidopsis thaliana]                         243  3e-62
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...   242  3e-62
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...   239  2e-61
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]              239  4e-61
UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabid...   232  3e-59
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                            231  8e-59
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...   228  7e-58
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]        226  2e-57

>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score =  270 bits (689), Expect = 2e-70
 Identities = 130/243 (53%), Positives = 180/243 (73%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            ++SLYGLKQSPR+WY+RFD F+L   F  S YDSCVY LK  +  ++YLLLYVDD+L+A+
Sbjct: 935  KKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVY-LKVVDGSVIYLLLYVDDMLIAA 993

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
              K EI KLK +L+ EFEMKDLG AK++LG++I R R  G+L+LSQ GY++K   RF M 
Sbjct: 994  KDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMH 1053

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VSTPL  H +LS   CP S+ + + M   PY+S VGS+MY MVC RPDL++A+S+V
Sbjct: 1054 DAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVV 1113

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            +R+MANPG  HW+A++W+ RYL G+    L++ R+    D L GYVD+D+AG++D R+S+
Sbjct: 1114 NRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERS---RDGLVGYVDSDFAGDLDRRRSI 1170

Query: 805  VGF 807
             G+
Sbjct: 1171 TGY 1173


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score =  268 bits (685), Expect = 6e-70
 Identities = 130/243 (53%), Positives = 181/243 (73%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            + SLYGLKQSPR+WY+RFD F+L  GF RS +DSCVY+   N   I YLLLYVDD+L+A+
Sbjct: 953  KRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPI-YLLLYVDDMLIAA 1011

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
             SK++I  LK++L+ EF+MKDLG AK++LG++I R+R+ G LFLSQ  Y+KK  +RF M 
Sbjct: 1012 KSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMH 1071

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VSTP+  H KLS  QC  ++++ + M   PY+S VGS+MY MVCS PDL++A+S+V
Sbjct: 1072 DAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLV 1131

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+MANPG  HW+A++W+ RYL G+    LK+ R    +  L GYVD+D+A ++D R+SL
Sbjct: 1132 SRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRI---DKGLVGYVDSDFAADLDKRRSL 1188

Query: 805  VGF 807
             G+
Sbjct: 1189 TGY 1191


>UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]
          Length = 1241

 Score =  267 bits (683), Expect = 1e-69
 Identities = 132/243 (54%), Positives = 179/243 (73%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            ++SLYGLKQSPR+WY+RFD F+L   F RS YDSCVY LK  +   +YLLLYVDD+L+A+
Sbjct: 872  KKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY-LKVVDGSAIYLLLYVDDMLIAA 930

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
              K EI KLK +L+ EFEMKDLG AK++LG++I R R  G+L+LSQ  Y++K   RF M 
Sbjct: 931  KDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMH 990

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VST L  H +LS   CPQS  + + M   PY+S V S+MY MVCSRPDL++A+S+V
Sbjct: 991  DAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVV 1050

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+MANPG  HW+A++W+ RYL G+    L++ R++   D L GYVD+D+AG++D R+SL
Sbjct: 1051 SRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSS---DGLVGYVDSDFAGDLDRRRSL 1107

Query: 805  VGF 807
             G+
Sbjct: 1108 TGY 1110


>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
          Length = 1211

 Score =  267 bits (682), Expect = 1e-69
 Identities = 131/243 (53%), Positives = 178/243 (72%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            ++SLYGLKQSPR+WY+RFD F+    F RS YDSCVY LK  +   +YLLLYVDD+L+A+
Sbjct: 842  KKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVY-LKVVDGSSIYLLLYVDDMLIAA 900

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
              K EI KLK +L+ EFEMKDLG AK++LG++I R R  G+L+LSQ GY++K   RF M 
Sbjct: 901  KDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMH 960

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VSTPL  H +LS   CPQS+ + + M   PY S VGS+MY MVCSR DL++A+S+V
Sbjct: 961  DAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVV 1020

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+MANPG  HW+ ++W+ +YL G+    L++ R+    D L GYVD+D+AG++D R+SL
Sbjct: 1021 SRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRS---RDGLVGYVDSDFAGDLDRRRSL 1077

Query: 805  VGF 807
             G+
Sbjct: 1078 TGY 1080


>UniRef100_Q7XV90 OSJNBb0012E08.6 protein [Oryza sativa]
          Length = 375

 Score =  266 bits (679), Expect = 3e-69
 Identities = 129/243 (53%), Positives = 181/243 (74%), Gaps = 4/243 (1%)

Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
           + SLYGLKQSPR+WY+RFD F+L  GF RS +DSCVY+   N   I YLLLYVDD+L+A+
Sbjct: 20  KRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPI-YLLLYVDDMLIAA 78

Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            SK++I  LK++L+ EF+MK+LG AK++LG++I R+R+ G LFLSQ  Y+KK  +RF M 
Sbjct: 79  KSKEQITTLKKQLSSEFDMKNLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMH 138

Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
           ++K VSTP+  H KLS  QC  ++++ + M   PY+S VGS+MY MVCSRPDL++A+S+V
Sbjct: 139 DAKPVSTPIVSHFKLSALQCASTDEDVEYMSRVPYSSDVGSLMYAMVCSRPDLSHAMSLV 198

Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
           SR+MANPG  HW+A++W+ RYL G+    LK+ R    +  L GYVD+D+A ++D R+SL
Sbjct: 199 SRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRT---DKGLVGYVDSDFAADLDKRRSL 255

Query: 805 VGF 807
             +
Sbjct: 256 TDY 258


>UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]
          Length = 1005

 Score =  261 bits (667), Expect = 7e-68
 Identities = 126/243 (51%), Positives = 178/243 (72%), Gaps = 5/243 (2%)

Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
           + S YGLKQSPR+WY+RFD F+L  GF RS +DSCVY+   N   I   LLYVDD+L+A+
Sbjct: 637 KRSFYGLKQSPRQWYKRFDLFMLSHGFKRSEFDSCVYIKFVNGSPIY--LLYVDDMLIAA 694

Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            SK++I  LK++L+ EF+MKDLG AK++LG++I R+R+ G LFLSQ  Y+K   +RF M 
Sbjct: 695 KSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKNVLQRFNMH 754

Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
           ++K VS P+  H KLS+ QC  ++++ + M   PY+S VGS+MY MVCSRPDL++A+S+V
Sbjct: 755 DAKLVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLV 814

Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
           SR+MANPG  HW+A++W+ RYL G+    LK+ R    +  L GYVD+D+A ++D R+SL
Sbjct: 815 SRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRT---DKGLVGYVDSDFAADLDKRRSL 871

Query: 805 VGF 807
            G+
Sbjct: 872 TGY 874


>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  258 bits (658), Expect = 8e-67
 Identities = 128/243 (52%), Positives = 174/243 (70%), Gaps = 2/243 (0%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            + SLYGLKQSPR+W  RFDEF+    + RS YDSCVY  K N    +YLLLYVDD+L+AS
Sbjct: 963  KRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIAS 1022

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            ++K E+ +LK+ L+ EFEMKDLG AK++LG++I R+RD G L LSQ GY+KK    F+M 
Sbjct: 1023 ANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMD 1082

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            N+K VSTPLG H KL      + E++ + M+  PYA+ +GSIMY M+ +RPDLAY++ ++
Sbjct: 1083 NAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVI 1142

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SRFM+ P   HWQA+KWVLRY+ G+ K  L + +  Q++  L GY D+DY  N DTR+S+
Sbjct: 1143 SRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRK--QEDFLLRGYCDSDYGSNFDTRRSI 1200

Query: 805  VGF 807
             G+
Sbjct: 1201 TGY 1203


>UniRef100_Q75IK3 Putative polyprotein [Oryza sativa]
          Length = 1175

 Score =  257 bits (657), Expect = 1e-66
 Identities = 127/243 (52%), Positives = 177/243 (72%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            + SLYGLKQSPR+WY+RFD F+L  GF RS +DSCVY+   N   I YLLLYVDD+L+A+
Sbjct: 806  KRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNVSPI-YLLLYVDDMLIAA 864

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
             SK++I  LK++L+ EF+MKDL  AK++LG++I R+R+ G LFLSQ  Y+KK  +RF M 
Sbjct: 865  KSKEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQRFNMH 924

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VST +  H KLS  QC  ++++ + M   PY+S VGS+MY MVCSR DL++A+S+V
Sbjct: 925  DTKPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHAMSLV 984

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+MANPG  HW+A++W+ RYL  +    LK+ R       L GYVD+D+A ++D R+SL
Sbjct: 985  SRYMANPGKEHWKAIQWIFRYLRDTANACLKFGRT---NKGLIGYVDSDFAADLDKRRSL 1041

Query: 805  VGF 807
             G+
Sbjct: 1042 TGY 1044


>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
          Length = 1229

 Score =  257 bits (657), Expect = 1e-66
 Identities = 126/243 (51%), Positives = 179/243 (72%), Gaps = 4/243 (1%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            + SLYGLKQSPR+WY+RFD F+L  GF RS +DSCVY+   N   I YLLLYVDD+L+A+
Sbjct: 899  KRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSHI-YLLLYVDDMLIAA 957

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
             SK++I  LK++L+ EF+MKDL  +K++LG++I R+ + G LFLSQ  Y+KK  +RF + 
Sbjct: 958  KSKEQITTLKKQLSSEFDMKDLVASKKILGMEITRDINSGLLFLSQQSYIKKVLQRFNIH 1017

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            ++K VSTP+  H KLS  QC  ++++ + M   PY+S VGS+MY MVCSRP L++A+S+V
Sbjct: 1018 DAKPVSTPIAPHFKLSALQCTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVLSHAMSLV 1077

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+MANPG  HW+A++W+ RYL G+    LK+ R    +  L GYVD+D+A ++D R+SL
Sbjct: 1078 SRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRT---DKGLVGYVDSDFAADLDKRRSL 1134

Query: 805  VGF 807
             G+
Sbjct: 1135 TGY 1137


>UniRef100_Q7XP09 OSJNBb0013J13.11 protein [Oryza sativa]
          Length = 576

 Score =  256 bits (655), Expect = 2e-66
 Identities = 127/248 (51%), Positives = 177/248 (71%), Gaps = 4/248 (1%)

Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
           + SLYGLKQSPR+WY+RFD F+L  GF  S +DSCVY+   N   I YLLLYVDD+L+A+
Sbjct: 286 KRSLYGLKQSPRQWYKRFDSFMLSHGFKWSEFDSCVYIKFVNGSPI-YLLLYVDDMLIAA 344

Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            SK++I  LK++L+ EF+MKDLG AK++LG++I R+ + G LFLSQ  Y+KK  E F M 
Sbjct: 345 KSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDINFGLLFLSQQSYIKKVLEHFNMH 404

Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
           ++K +STP+  H KLS  QC  ++++   M   PY+S VGS+MY M+CSRPDL++A+S+V
Sbjct: 405 DAKPISTPIAAHFKLSALQCASTDEDVGYMSRVPYSSAVGSLMYAMICSRPDLSHAMSLV 464

Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
           SR+MANPG  HW+A++W  RYL G+     K+ R    +  L GYVD+D+A N+D R+S 
Sbjct: 465 SRYMANPGKEHWKAVQWFFRYLRGTTDACSKFGRT---DKGLVGYVDSDFAANLDKRRSF 521

Query: 805 VGFCVYSL 812
               +Y+L
Sbjct: 522 TVKVLYAL 529


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  247 bits (631), Expect = 1e-63
 Identities = 122/243 (50%), Positives = 168/243 (68%), Gaps = 2/243 (0%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            ++SLYGLKQSPR+W +RFD F++ +G+ RS Y+ CVY  + N+   +YLLLYVDD+L+AS
Sbjct: 970  KKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIAS 1029

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
             +KD+I KLKE LN EFEMKDLGPA+++LG++I RNR++G L LSQ  Y+      F M 
Sbjct: 1030 QNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMD 1089

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
             SK   TPLG H KL          + + M+  PY + +GSIMY M+ SRPDLAY V +V
Sbjct: 1090 QSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVV 1149

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SRFM+ P   HWQA+KWV+RY+ G+    L++ +   D+  + GY D+DYA ++D R+S+
Sbjct: 1150 SRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKK--DDKFEIRGYCDSDYATDLDRRRSI 1207

Query: 805  VGF 807
             GF
Sbjct: 1208 TGF 1210


>UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]
          Length = 1338

 Score =  245 bits (625), Expect = 5e-63
 Identities = 119/244 (48%), Positives = 173/244 (70%), Gaps = 3/244 (1%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            +SLYGLKQ+PR+WY++F+  + + G+ ++  D CV+  K ++   + LLLYVDD+L+   
Sbjct: 959  KSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGR 1018

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
            +   I  LKE+L+  F MKDLGPAK++LG+ I R+R+  +L+LSQ  Y++K  +RF M  
Sbjct: 1019 NVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEK 1078

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
            +K VS PL +H +LS +Q P ++DE++ ME  PYAS VGS+MY MVC+RPD+A+AV +VS
Sbjct: 1079 TKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVS 1138

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            RF++NPG  HW A+KW+LRYL G+ K  L +    +D   L GY DAD AG+VD+RKS  
Sbjct: 1139 RFLSNPGKEHWDAVKWILRYLRGTSKLCLCF---GEDNPVLVGYTDADMAGDVDSRKSTS 1195

Query: 806  GFCV 809
            G+ +
Sbjct: 1196 GYLI 1199


>UniRef100_Q02902 Orf 3 [Arabidopsis thaliana]
          Length = 494

 Score =  243 bits (619), Expect = 3e-62
 Identities = 120/243 (49%), Positives = 171/243 (69%), Gaps = 5/243 (2%)

Query: 565 EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
           ++SLYGLKQSPR+W +RF  F++   F+RS +D+CVY+ +  E+  LYLLLYVDD+L+A 
Sbjct: 218 KKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAG 277

Query: 625 SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            SK EI K+KE+L+ EFEMKD+GPA R+LGIDI R+R  G L +SQ  Y+    +RF M+
Sbjct: 278 KSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMA 337

Query: 685 NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
            +K   +P+G H KL+     + +DE       PYAS VG+IMY M+ +RPDLAYA+ +V
Sbjct: 338 EAKVTRSPIGAHFKLA---AVRDDDECIDNNALPYASAVGNIMYAMIGTRPDLAYAICLV 394

Query: 745 SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
           SR+MA PG +HW+A+KW+LRY+ GS    L +T+  + E  +  Y D+DYA ++D R+S+
Sbjct: 395 SRYMARPGNIHWEAVKWILRYMRGSQDLNLVFTK--EKEFRVTRYCDSDYAADLDRRRSV 452

Query: 805 VGF 807
            G+
Sbjct: 453 SGY 455


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
            (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score =  242 bits (618), Expect = 3e-62
 Identities = 119/242 (49%), Positives = 165/242 (68%), Gaps = 3/242 (1%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            +SLYGLKQ+PR+WY +FD F+    ++++  D CVY  + +E   + LLLYVDD+L+   
Sbjct: 958  KSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGK 1017

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
             K  I KLK  L+  F+MKDLGPA+++LG+ I R R   +L+LSQ  Y+++  ERF M N
Sbjct: 1018 DKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKN 1077

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
            +K VSTPL  H KLS + CP + +EK  M   PY+S VGS+MY MVC+RPD+A+AV +VS
Sbjct: 1078 AKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVS 1137

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            RF+ NPG  HW+A+KW+LRYL G+    L +      +  L+GY DAD AG++D RKS  
Sbjct: 1138 RFLENPGKEHWEAVKWILRYLRGTTGDCLCF---GGSDPILKGYTDADMAGDIDNRKSST 1194

Query: 806  GF 807
            G+
Sbjct: 1195 GY 1196


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  239 bits (611), Expect = 2e-61
 Identities = 117/241 (48%), Positives = 170/241 (69%), Gaps = 2/241 (0%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            +SLYGLKQ+P++W  +F+ ++ + GF+RS YDSC Y+ + ++   +YLLLYVDD+L+A+ 
Sbjct: 962  KSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAK 1021

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
            +K++I +LKE L+  F+MKDLG AKR+LG++I RNR++  L+LSQ GYL K  E + M+ 
Sbjct: 1022 NKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAE 1081

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
            SK V TPLG H K+      + E ++  M+  PY+S VGSIMY M+ +RPDLAY V I+S
Sbjct: 1082 SKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIIS 1141

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            R+M+ P   HW  +KWVLRY+ GSL   L+Y R++  +  + GY DAD+A   D R+S+ 
Sbjct: 1142 RYMSQPAREHWLGVKWVLRYIKGSLGTKLQYKRSS--DFKVVGYCDADHAACKDRRRSIT 1199

Query: 806  G 806
            G
Sbjct: 1200 G 1200


>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
          Length = 1356

 Score =  239 bits (609), Expect = 4e-61
 Identities = 119/243 (48%), Positives = 174/243 (70%), Gaps = 5/243 (2%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            ++SLYGLKQSPR+W +RFD F+    F+RS +D+CVY+   +E   +YLLLYVDD+L+A 
Sbjct: 986  KKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAG 1045

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
            +SK EI ++KE+L+ EFEMKD+G A R+LGIDI R+R  G L LSQ  Y++K  +RF MS
Sbjct: 1046 ASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMS 1105

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
             +K  + P+G H KL+     + EDE    +  PY+S VGSIMY M+ +RPDLAYA+ ++
Sbjct: 1106 GAKMTNAPVGAHFKLA---AVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLI 1162

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
            SR+M+ PG +HW+A+KWV+RYL G+    L +T+  + +  + GY D++YA ++D R+S+
Sbjct: 1163 SRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTK--EKDFTVTGYCDSNYAADLDRRRSI 1220

Query: 805  VGF 807
             G+
Sbjct: 1221 SGY 1223


>UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  232 bits (592), Expect = 3e-59
 Identities = 121/248 (48%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 565  EESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMAS 624
            + SLYGL+QSPR+W  RF+EF+ K G+ RS YDSCVY  +      +YLLLYVDDIL+AS
Sbjct: 781  KRSLYGLRQSPRQWNNRFNEFMQKIGYERSKYDSCVYFKELQSGEYIYLLLYVDDILIAS 840

Query: 625  SSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMS 684
              K  +  LK  LN EFEMKDLG AK++LG++I R+R  G + +SQ GYL K    F M 
Sbjct: 841  RDKRTVCDLKALLNSEFEMKDLGDAKKILGMEIVRDRKAGTMSISQEGYLLKVLGNFGMD 900

Query: 685  NSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIV 744
             +K V TP+G H KL      +   + ++M   PY S VGS+MY M+ +RPDLA++V +V
Sbjct: 901  QAKPVFTPMGAHFKLKPATDEEVMRQSEVMRAVPYQSAVGSLMYSMIGTRPDLAHSVGLV 960

Query: 745  SRFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSL 804
             RFM+ P   HWQA+KW+LRY+ GS+   L Y    + E  LEGY D+DYA + + R+S 
Sbjct: 961  CRFMSKPLKEHWQAVKWILRYIRGSIDRKLCYKN--EGELILEGYCDSDYAADKEGRRST 1018

Query: 805  VGFCVYSL 812
             G  V +L
Sbjct: 1019 SGVKVVAL 1026


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  231 bits (589), Expect = 8e-59
 Identities = 115/242 (47%), Positives = 161/242 (66%), Gaps = 3/242 (1%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            +SLYGLKQ+PR WY+RFD F++  G+ R   D C Y  +  +   + LLLYVDD+L+A  
Sbjct: 928  KSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGP 987

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
            +KD I +LK +L  EFEMKDLGPA ++LG+ I R+R   +++LSQ  YLKK   RF M +
Sbjct: 988  NKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQD 1047

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
             K++STPL  + K+S    P +E+ +  M   PYAS VGS+M+ M+C+RPD+A AV +VS
Sbjct: 1048 CKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVS 1107

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            R+MANPG  HW  +K +LRY+ G+    L Y      +  + GYVD+DYAG++D  KS  
Sbjct: 1108 RYMANPGREHWNCVKRILRYIKGTSDVALCY---GGSDFIINGYVDSDYAGDLDKSKSTT 1164

Query: 806  GF 807
            G+
Sbjct: 1165 GY 1166


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  228 bits (581), Expect = 7e-58
 Identities = 115/241 (47%), Positives = 161/241 (66%), Gaps = 2/241 (0%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            ++LYGLKQ+P++W  +FD F+ +  FV+S YDSC Y     +  ++YLL+YVDDIL+AS 
Sbjct: 985  KALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASK 1044

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
            +K+ I  LK  L   FEMKDLG AK++LG++I R+R  G L+LSQ GYL K  E + M+ 
Sbjct: 1045 NKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAE 1104

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
            +K   TPLG H K       +   ++  M+  PY+S VGSIMY M+ +RPDLAY V I+S
Sbjct: 1105 AKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIIS 1164

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            RFM+ P   HW  +KWVLRY+ G+LK  L Y +++    ++ GY DADYA ++D R+S+ 
Sbjct: 1165 RFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSS--SFSIVGYCDADYAADLDKRRSIT 1222

Query: 806  G 806
            G
Sbjct: 1223 G 1223


>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  226 bits (577), Expect = 2e-57
 Identities = 114/241 (47%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 566  ESLYGLKQSPREWYRRFDEFLLKTGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASS 625
            +SLYGLKQ+PR+W  +F+ ++ + GF RS YDSC Y  K ++   +YLL YVDD+L+A++
Sbjct: 992  KSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAAN 1051

Query: 626  SKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFLSQLGYLKKGGERFRMSN 685
            +   I  LK+ L+ +FEMKDLG AK++LGI+I  +R+ G L+LSQ  YL K  + F M  
Sbjct: 1052 NMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLE 1111

Query: 686  SKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVS 745
            SK   TPLG H K+      +   E++ M   PY+S VGSIMY M+ +RPDLAY V +VS
Sbjct: 1112 SKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVS 1171

Query: 746  RFMANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLV 805
            RFM+ P   HW  +KWVLRY+ G++   L Y R    + ++ GY DADYA ++D R+S+ 
Sbjct: 1172 RFMSQPAKEHWLGVKWVLRYIKGTVDTRLCYKR--NSDFSICGYCDADYAADLDKRRSIT 1229

Query: 806  G 806
            G
Sbjct: 1230 G 1230


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.356    0.161    0.595 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,366,415,177
Number of Sequences: 2790947
Number of extensions: 54214175
Number of successful extensions: 201568
Number of sequences better than 10.0: 1308
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 198067
Number of HSP's gapped (non-prelim): 1625
length of query: 937
length of database: 848,049,833
effective HSP length: 137
effective length of query: 800
effective length of database: 465,690,094
effective search space: 372552075200
effective search space used: 372552075200
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 80 (35.4 bits)