BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130801.12 + phase: 0
(124 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6PUG0 3-dehydroquinate dehydratase / shikimate dehydr... 127 4e-29
UniRef100_Q5ZCU7 Putative dehydroquinate dehydratase [Oryza sativa] 94 9e-19
UniRef100_Q5ZCV1 Putative dehydroquinate dehydratase [Oryza sativa] 92 3e-18
UniRef100_O65917 Dehydroquinate dehydratase/shikimate:NADP oxido... 91 6e-18
UniRef100_Q42947 Dehydroquinate dehydratase/shikimate dehydrogen... 91 6e-18
UniRef100_Q9SQT8 Putative dehydroquinase shikimate dehydrogenase... 82 3e-15
UniRef100_Q6NLY1 At3g06350 [Arabidopsis thaliana] 82 3e-15
UniRef100_UPI0000334AB1 UPI0000334AB1 UniRef100 entry 75 3e-13
UniRef100_UPI00002D5481 UPI00002D5481 UniRef100 entry 57 1e-07
UniRef100_Q7UQ72 3-dehydroquinate dehydratase / shikimate 5-dehy... 50 1e-05
UniRef100_O26344 Shikimate dehydrogenase [Methanobacterium therm... 46 2e-04
UniRef100_Q8RAG2 Shikimate dehydrogenase [Thermoanaerobacter ten... 42 0.003
UniRef100_O27957 Shikimate dehydrogenase [Archaeoglobus fulgidus] 42 0.004
UniRef100_Q58484 Shikimate dehydrogenase [Methanococcus jannaschii] 40 0.016
UniRef100_Q8THC3 Shikimate dehydrogenase [Methanosarcina acetivo... 39 0.021
UniRef100_Q6MCU3 Putative 3-phosphoshikimate 1-carboxyvinyltrans... 39 0.027
UniRef100_Q6AIT9 Probable shikimate 5-dehydrogenase [Desulfotale... 39 0.035
UniRef100_UPI00003CA5D0 UPI00003CA5D0 UniRef100 entry 38 0.060
UniRef100_Q8FSF0 Shikimate 5-dehydrogenase [Corynebacterium effi... 38 0.060
UniRef100_Q71XC9 Shikimate 5-dehydrogenase, putative [Listeria m... 38 0.060
>UniRef100_Q6PUG0 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2
[Nicotiana tabacum]
Length = 518
Score = 127 bits (320), Expect = 4e-29
Identities = 67/101 (66%), Positives = 82/101 (80%), Gaps = 7/101 (6%)
Query: 9 PLDGRLFVR--AGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNF 66
PL G+LFV AGGAG+ALAFGAK+R A+I+IFDIDFD++++LA AV GE ++NL +F
Sbjct: 364 PLAGKLFVLVGAGGAGRALAFGAKSRRAQIMIFDIDFDRAKALAAAVSGEALPFENLASF 423
Query: 67 QPVKGAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
QP KGAILANATPIGMHP+ DRIPV+E Y +VFDAVY
Sbjct: 424 QPEKGAILANATPIGMHPNKDRIPVSEATLKDYLVVFDAVY 464
>UniRef100_Q5ZCU7 Putative dehydroquinate dehydratase [Oryza sativa]
Length = 657
Score = 93.6 bits (231), Expect = 9e-19
Identities = 53/107 (49%), Positives = 70/107 (64%), Gaps = 7/107 (6%)
Query: 3 KHLQVHPLDGRLFV--RAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSY 60
K+ V PL GRL V AGGAGKA+A+GAK +GARIV+ + ++K+ SLA AV G
Sbjct: 432 KNAAVTPLAGRLLVVVGAGGAGKAIAYGAKEKGARIVVANRTYEKAVSLAAAVGGHALRL 491
Query: 61 KNLVNFQPVKGAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
L F+P +G ILANAT +GM+P+ D P+ + Y +VFDAVY
Sbjct: 492 AELETFRPEEGMILANATSLGMYPNVDGTPIPKQALSFYDVVFDAVY 538
>UniRef100_Q5ZCV1 Putative dehydroquinate dehydratase [Oryza sativa]
Length = 509
Score = 92.0 bits (227), Expect = 3e-18
Identities = 51/107 (47%), Positives = 69/107 (63%), Gaps = 7/107 (6%)
Query: 3 KHLQVHPLDGRLFV--RAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSY 60
K + PL GRL V AGGAGKA+A+GAK +GAR+V+ + ++K+ SLA AV G
Sbjct: 348 KDAAISPLAGRLVVVVGAGGAGKAIAYGAKEKGARVVVANRTYEKAVSLAAAVGGHALRL 407
Query: 61 KNLVNFQPVKGAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
L F+P +G ILANAT +GM+P+ D P+ + Y +VFDAVY
Sbjct: 408 AELETFRPEEGMILANATSLGMYPNVDGTPIPKKALSFYDVVFDAVY 454
>UniRef100_O65917 Dehydroquinate dehydratase/shikimate:NADP oxidoreductase
[Lycopersicon esculentum]
Length = 545
Score = 90.9 bits (224), Expect = 6e-18
Identities = 51/101 (50%), Positives = 64/101 (62%), Gaps = 7/101 (6%)
Query: 9 PLDGRLFV--RAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNF 66
PL G+LFV AGGAGKA+A+GAK +GAR+VI + ++++R LA V E S L NF
Sbjct: 392 PLAGKLFVVIGAGGAGKAIAYGAKEKGARVVIANRTYERARELAIVVGAEALSLDELSNF 451
Query: 67 QPVKGAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
P ILAN T IGM P D P+++ Y LVFDAVY
Sbjct: 452 HPENDMILANTTSIGMQPKVDDTPISKEALKHYSLVFDAVY 492
>UniRef100_Q42947 Dehydroquinate dehydratase/shikimate dehydrogenase precursor
[Nicotiana tabacum]
Length = 579
Score = 90.9 bits (224), Expect = 6e-18
Identities = 52/101 (51%), Positives = 64/101 (62%), Gaps = 7/101 (6%)
Query: 9 PLDGRLFV--RAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNF 66
PL G+LFV AGGAGKALA+GAK +GAR+VI + ++++R LA V G+ S L NF
Sbjct: 383 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERARELADVVGGQALSLDELSNF 442
Query: 67 QPVKGAILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
P ILAN T IGM P D P+ + Y LVFDAVY
Sbjct: 443 HPENDMILANTTSIGMQPKVDDTPIFKEALRYYSLVFDAVY 483
>UniRef100_Q9SQT8 Putative dehydroquinase shikimate dehydrogenase [Arabidopsis
thaliana]
Length = 603
Score = 82.0 bits (201), Expect = 3e-15
Identities = 41/92 (44%), Positives = 62/92 (66%), Gaps = 5/92 (5%)
Query: 16 VRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAILA 75
+ AGGAGKALA+GAK +GA++VI + ++++ LA A+ G+ S +L N+ P G +LA
Sbjct: 459 IGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLA 518
Query: 76 NATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
N T +GM P+ + P+++ Y LVFDAVY
Sbjct: 519 NTTSMGMQPNVEETPISKDALKHYALVFDAVY 550
>UniRef100_Q6NLY1 At3g06350 [Arabidopsis thaliana]
Length = 603
Score = 82.0 bits (201), Expect = 3e-15
Identities = 41/92 (44%), Positives = 62/92 (66%), Gaps = 5/92 (5%)
Query: 16 VRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAILA 75
+ AGGAGKALA+GAK +GA++VI + ++++ LA A+ G+ S +L N+ P G +LA
Sbjct: 459 IGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLA 518
Query: 76 NATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
N T +GM P+ + P+++ Y LVFDAVY
Sbjct: 519 NTTSMGMQPNVEETPISKDALKHYALVFDAVY 550
>UniRef100_UPI0000334AB1 UPI0000334AB1 UniRef100 entry
Length = 254
Score = 75.5 bits (184), Expect = 3e-13
Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 8/100 (8%)
Query: 10 LDGR--LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQ 67
L+G+ + + AGGAG+ALAFGAK +GA +VI + D++R+LA A G + ++L N
Sbjct: 101 LEGKTVVVIGAGGAGRALAFGAKFKGANVVIANRSIDRARALAEACGGVAVTLEDLAN-G 159
Query: 68 PVKGAILANATPIGMHPDTDRIP-----VAEYQLVFDAVY 102
VKG +LAN T +GM P+ D P + Y +VFDAVY
Sbjct: 160 GVKGDVLANTTSVGMQPNVDDTPAPASALQGYSVVFDAVY 199
>UniRef100_UPI00002D5481 UPI00002D5481 UniRef100 entry
Length = 187
Score = 56.6 bits (135), Expect = 1e-07
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 14 LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAI 73
L + AGGA +A+AFG K +G + I ++S++LA V G+V + +
Sbjct: 36 LILGAGGAARAIAFGLKQQGVEVTIASRTVERSQTLAELVNGKVVEWSGR---HRLPYDC 92
Query: 74 LANATPIGMHPDTDRIP-----VAEYQLVFDAVY 102
+ NATPIGMHP + P + Y +VFD VY
Sbjct: 93 VVNATPIGMHPKVNETPFEAKHLRPYMVVFDTVY 126
>UniRef100_Q7UQ72 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase
[Rhodopirellula baltica]
Length = 496
Score = 50.1 bits (118), Expect = 1e-05
Identities = 30/94 (31%), Positives = 47/94 (49%), Gaps = 8/94 (8%)
Query: 14 LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAI 73
L + AGG +A+A+G + R + I +++ LA + V ++ K +
Sbjct: 346 LVLGAGGVSRAIAWGLRQRKCDVTISSRTRERAEMLAADIGCRVIDWEER---HEAKVQL 402
Query: 74 LANATPIGMHPDTDRIP-----VAEYQLVFDAVY 102
L N TPIGMHPD D P + ++ +VFD VY
Sbjct: 403 LINGTPIGMHPDVDNTPFNQSALNQFMVVFDTVY 436
>UniRef100_O26344 Shikimate dehydrogenase [Methanobacterium thermoautotrophicum]
Length = 283
Score = 46.2 bits (108), Expect = 2e-04
Identities = 30/97 (30%), Positives = 53/97 (53%), Gaps = 6/97 (6%)
Query: 14 LFVRAGGAGKALAFGAKTRGAR-IVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGA 72
L + AGGA +A AF +GA I I + +K+R LA + ++ + ++ ++G+
Sbjct: 126 LILGAGGAARACAFQLAEKGASDITILNRTPEKARLLAEDMADKLGFEASYGGYELIQGS 185
Query: 73 -----ILANATPIGMHPDTDRIPVAEYQLVFDAVYLH 104
IL + TP+GMHP TD P+ +L+ + + +H
Sbjct: 186 VKSADILIDTTPVGMHPHTDDRPLVGAELMHEGLVVH 222
>UniRef100_Q8RAG2 Shikimate dehydrogenase [Thermoanaerobacter tengcongensis]
Length = 280
Score = 42.0 bits (97), Expect = 0.003
Identities = 30/95 (31%), Positives = 47/95 (48%), Gaps = 10/95 (10%)
Query: 18 AGGAGKALAFGAKTRGAR-IVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGA---- 72
AGGA KA+ F G IVI + +K+++LA + E + + + + V+
Sbjct: 132 AGGASKAICFALAREGVESIVIANRTLNKAKALAEYIREEFKMKCDYCSIEEVEKFNEID 191
Query: 73 ILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
IL N T +GMHP+ PV+E V+D +Y
Sbjct: 192 ILINTTSVGMHPEVGNSPVSEEVVAKANFVYDLIY 226
>UniRef100_O27957 Shikimate dehydrogenase [Archaeoglobus fulgidus]
Length = 269
Score = 41.6 bits (96), Expect = 0.004
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 14 LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAV--FGEVQSYKNLVNFQPVKG 71
L V AGGAGKA A G+ +++ + +K R + +GE + L + +KG
Sbjct: 117 LVVGAGGAGKAAALALLDMGSTVIVANRTEEKGREAVEMLRRYGEC-IFWPLSRVEELKG 175
Query: 72 A--ILANATPIGMHPDTDRIPVAE-----YQLVFDAVY 102
++ NATP+GM IPV +LVFD VY
Sbjct: 176 KVDVVVNATPLGMRGFKAEIPVPPSMLDGVELVFDTVY 213
>UniRef100_Q58484 Shikimate dehydrogenase [Methanococcus jannaschii]
Length = 282
Score = 39.7 bits (91), Expect = 0.016
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 18 AGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAV-------FGEVQSYKNL-VNFQPV 69
AGGA +A+AF + I+I + +K+ +LA + FGE + L V+ V
Sbjct: 131 AGGAARAVAFEL-AKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGV 189
Query: 70 KGAILANATPIGMHPDTDRIPVA------EYQLVFDAVY 102
I+ NATPIGM+P+ D P+ E +V D +Y
Sbjct: 190 D--IIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIY 226
>UniRef100_Q8THC3 Shikimate dehydrogenase [Methanosarcina acetivorans]
Length = 280
Score = 39.3 bits (90), Expect = 0.021
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 18 AGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGA----- 72
AGGA +A+AF GA I + + +++ LA V S +N + G
Sbjct: 129 AGGAARAVAFQLAADGAEITVVNRTEERAVELAKDV--AAASLPGKINGTGLSGLKELLR 186
Query: 73 ---ILANATPIGMHPDTDRIPVAEYQL-----VFDAVY 102
IL N T +GMHP+TD +L VFD VY
Sbjct: 187 DADILINTTTLGMHPNTDTTIATAEELHSGLTVFDIVY 224
>UniRef100_Q6MCU3 Putative 3-phosphoshikimate 1-carboxyvinyltransferase
[Parachlamydia sp.]
Length = 939
Score = 38.9 bits (89), Expect = 0.027
Identities = 25/93 (26%), Positives = 48/93 (50%), Gaps = 2/93 (2%)
Query: 2 VKHLQVHPLDGR--LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQS 59
+K L+V L + + + AGG +A+A+ AK RGA + I + +++ +A + +
Sbjct: 348 LKALKVEDLKDKKLILLGAGGTSQAIAYEAKKRGAEVTILNRTVLRAKDVAEKIQVKWGG 407
Query: 60 YKNLVNFQPVKGAILANATPIGMHPDTDRIPVA 92
++ L + + IL T +GM P D + V+
Sbjct: 408 FEQLKEAKKNECDILIQTTSVGMSPHVDALVVS 440
>UniRef100_Q6AIT9 Probable shikimate 5-dehydrogenase [Desulfotalea psychrophila]
Length = 296
Score = 38.5 bits (88), Expect = 0.035
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 14 LFVRAGGAGKALAFGAKTRGARIVIFDIDFDKSRSLACAVFGEVQSYKNLVNFQPVKGAI 73
L + AGG+ +A+ FG GA +++ + R LA FG + + +L + V+ I
Sbjct: 141 LLLGAGGSARAIGFGLLEAGAEVILCSRTPSRGRQLA-DEFGCL--WLSLEDIGSVRADI 197
Query: 74 LANATPIGMHPDTDRIPVAEYQL-----VFDAVY 102
+ NAT +GM P D + QL V D VY
Sbjct: 198 VVNATSVGMAPQEDVSLMTVEQLSGVEAVMDIVY 231
>UniRef100_UPI00003CA5D0 UPI00003CA5D0 UniRef100 entry
Length = 289
Score = 37.7 bits (86), Expect = 0.060
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 13/91 (14%)
Query: 16 VRAGGAGKALAFGAKTRGAR-IVIFDID---FDKSRSLACAVFGEVQSY---------KN 62
+ AGGA A+ GA+ I IF+I +DK++ A ++ EV +
Sbjct: 132 IGAGGAATAIQVQCALDGAKEITIFNIKDAFYDKAKQTAASIKQEVPNCIVHIYDLNDTE 191
Query: 63 LVNFQPVKGAILANATPIGMHPDTDRIPVAE 93
+N + IL NAT +GMHP+ P+++
Sbjct: 192 KLNAEITTSDILVNATLVGMHPNEHETPISD 222
>UniRef100_Q8FSF0 Shikimate 5-dehydrogenase [Corynebacterium efficiens]
Length = 284
Score = 37.7 bits (86), Expect = 0.060
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 16 VRAGGAGKALAFGAKTRGA-RIVIFDIDFDKSRSLACAVFGEV-QSYKNLVNFQPVKGAI 73
V AGG G A+A+ T G ++ + D+D ++++LA A+ + + + ++ + V+ AI
Sbjct: 134 VGAGGVGNAVAYSLVTHGVEQLQVADLDPARAQALADAINSAIGREAVHGIDARGVEEAI 193
Query: 74 LA-----NATPIGM--HPDT--DRIPVAEYQLVFDAVYL 103
A NATP+GM HP T D + + V D VY+
Sbjct: 194 AAADGVVNATPMGMLAHPGTAFDTSCLTPHHWVGDVVYM 232
>UniRef100_Q71XC9 Shikimate 5-dehydrogenase, putative [Listeria monocytogenes]
Length = 289
Score = 37.7 bits (86), Expect = 0.060
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 13/91 (14%)
Query: 16 VRAGGAGKALAFGAKTRGAR-IVIFDID---FDKSRSLACAVFGEVQSY---------KN 62
+ AGGA A+ GA+ I IF+I +DK++ A ++ EV +
Sbjct: 132 IGAGGAATAIQVQCALDGAKEITIFNIKDAFYDKAKQTAASIKQEVPNCIVHIYDLNDTE 191
Query: 63 LVNFQPVKGAILANATPIGMHPDTDRIPVAE 93
+N + IL NAT +GMHP+ P+++
Sbjct: 192 KLNAEIATSDILVNATLVGMHPNEHETPISD 222
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.327 0.143 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,152,624
Number of Sequences: 2790947
Number of extensions: 7520764
Number of successful extensions: 30088
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 30020
Number of HSP's gapped (non-prelim): 211
length of query: 124
length of database: 848,049,833
effective HSP length: 100
effective length of query: 24
effective length of database: 568,955,133
effective search space: 13654923192
effective search space used: 13654923192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC130801.12