BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC128660.9 + phase: 0 /pseudo
         (58 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9S7H4 Chorismate mutase CM2 [Arabidopsis thaliana]          66  2e-10
UniRef100_Q6F3R1 Chorismate mutase [Nicotiana tabacum]                 63  2e-09
UniRef100_Q9STB2 Chorimate mutase [Lycopersicon esculentum]            62  4e-09
UniRef100_Q6H819 Putative chorismate mutase, cytosolic [Oryza sa...    54  8e-07
UniRef100_Q6Z9E6 Putative chorimate mutase [Oryza sativa]              54  1e-06
UniRef100_Q9C544 Chorismate mutase, putative [Arabidopsis thaliana]    45  5e-04
UniRef100_Q9XF60 Chorismate mutase 3 [Arabidopsis thaliana]            45  5e-04
UniRef100_P42738 Chorismate mutase, chloroplast precursor [Arabi...    40  0.021
UniRef100_Q6CJB6 Similar to sp|Q12019 Saccharomyces cerevisiae Y...    35  0.39
UniRef100_UPI00002AF568 UPI00002AF568 UniRef100 entry                  33  2.5
UniRef100_Q7RRU3 CTP synthase [Plasmodium yoelii yoelii]               33  2.5
UniRef100_Q8I425 Hypothetical protein PFE0385w [Plasmodium falci...    31  9.7
UniRef100_Q8IBV2 Transcription elongation factor s-ii, putative ...    31  9.7

>UniRef100_Q9S7H4 Chorismate mutase CM2 [Arabidopsis thaliana]
          Length = 265

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDN--NDDNKGKQKFDPSMASTFYEKWVIPL 58
           MKLLTF+ VEEMVKKR++KK   F Q++ F++   D++K K K DP +AS  Y +W+IPL
Sbjct: 192 MKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPL 251


>UniRef100_Q6F3R1 Chorismate mutase [Nicotiana tabacum]
          Length = 179

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNK-GKQKFDPSMASTFYEKWVIPL 58
           MKLLTF++VEE+VKKR+ KK  +F Q +  + +D+ K  K K DPS+ S  Y++WV+PL
Sbjct: 120 MKLLTFEAVEEVVKKRVAKKAFVFGQQVTLNIDDNTKEAKYKVDPSLVSRLYDEWVMPL 178


>UniRef100_Q9STB2 Chorimate mutase [Lycopersicon esculentum]
          Length = 255

 Score = 62.0 bits (149), Expect = 4e-09
 Identities = 29/58 (50%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKWVIPL 58
           MKLLTF++VEEMVKKR+ KK  +F Q+++ ++N + + K K DP + S  Y++WV+PL
Sbjct: 185 MKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAE-EVKGKIDPLLVSRLYDEWVMPL 241


>UniRef100_Q6H819 Putative chorismate mutase, cytosolic [Oryza sativa]
          Length = 255

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 26/64 (40%), Positives = 41/64 (63%), Gaps = 6/64 (9%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNK------GKQKFDPSMASTFYEKW 54
           M LLTFK+VEE VK+R++KK  +F Q++  ++N D +       + K +P + S  Y+ W
Sbjct: 178 MNLLTFKAVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLW 237

Query: 55  VIPL 58
           V+PL
Sbjct: 238 VMPL 241


>UniRef100_Q6Z9E6 Putative chorimate mutase [Oryza sativa]
          Length = 284

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 6/64 (9%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFD------NNDDNKGKQKFDPSMASTFYEKW 54
           MKLLT ++ E++VK+R++KK  +F Q++  D      N++ ++   K DPS+    Y+KW
Sbjct: 207 MKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPVETGNSNSSQTSFKVDPSLVYKLYDKW 266

Query: 55  VIPL 58
           VIPL
Sbjct: 267 VIPL 270


>UniRef100_Q9C544 Chorismate mutase, putative [Arabidopsis thaliana]
          Length = 316

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINF-DNNDDNKGKQKFDPSMASTFYEKWVIPL 58
           M+LLT+++VEE+VKKR++ K  +F QDI   D   +     K  PS+ +  Y + ++PL
Sbjct: 244 MQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302


>UniRef100_Q9XF60 Chorismate mutase 3 [Arabidopsis thaliana]
          Length = 316

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINF-DNNDDNKGKQKFDPSMASTFYEKWVIPL 58
           M+LLT+++VEE+VKKR++ K  +F QDI   D   +     K  PS+ +  Y + ++PL
Sbjct: 244 MQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302


>UniRef100_P42738 Chorismate mutase, chloroplast precursor [Arabidopsis thaliana]
          Length = 334

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 8/66 (12%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINF----DNNDDNKGKQ----KFDPSMASTFYE 52
           M +LTF +VE+ +KKR++ KT  + Q++         ++ +G +    K  P +    Y 
Sbjct: 255 MDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYG 314

Query: 53  KWVIPL 58
            W++PL
Sbjct: 315 DWIMPL 320


>UniRef100_Q6CJB6 Similar to sp|Q12019 Saccharomyces cerevisiae YLR106c
           [Kluyveromyces lactis]
          Length = 4915

 Score = 35.4 bits (80), Expect = 0.39
 Identities = 15/49 (30%), Positives = 26/49 (52%)

Query: 6   FKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTFYEKW 54
           +K+V ++ K+ +K   ++ ++D N     D K K+K DP       EKW
Sbjct: 737 WKNVAKLWKEAIKMADSILKKDSNEKEEADKKKKRKLDPESKQALLEKW 785


>UniRef100_UPI00002AF568 UPI00002AF568 UniRef100 entry
          Length = 233

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 17/63 (26%), Positives = 32/63 (49%), Gaps = 5/63 (7%)

Query: 1   MKLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDD-----NKGKQKFDPSMASTFYEKWV 55
           M LLT ++VE+ V +R++ K  +F  DI+ +  +           K  P   +  Y +W+
Sbjct: 157 MALLTNQAVEDRVVRRVENKAKVFGSDISEEVPESLALPLGSDSFKLAPERVADLYYRWI 216

Query: 56  IPL 58
           +P+
Sbjct: 217 MPM 219


>UniRef100_Q7RRU3 CTP synthase [Plasmodium yoelii yoelii]
          Length = 756

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 4   LTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKF-DPSMASTFYE-KWVI 56
           L+ K+ ++     LKKK   ++ D+  DNN+D   KQ F D + +   Y+ KW I
Sbjct: 364 LSLKNKKKKKSPELKKKMNKYQYDMCLDNNNDANSKQTFIDETTSDEDYDKKWKI 418


>UniRef100_Q8I425 Hypothetical protein PFE0385w [Plasmodium falciparum]
          Length = 1527

 Score = 30.8 bits (68), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 9   VEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFDPSMASTF 50
           +EE V+K+ KKK T    + N +N+DDN      +   +S F
Sbjct: 531 IEESVQKKKKKKKTNNNNNNNNNNDDDNNENNSSEDQYSSEF 572


>UniRef100_Q8IBV2 Transcription elongation factor s-ii, putative [Plasmodium
           falciparum]
          Length = 403

 Score = 30.8 bits (68), Expect = 9.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 2   KLLTFKSVEEMVKKRLKKKTTLFRQDINFDNNDDNKGKQKFD 43
           KL + K+ E M+KKR  +K  +    IN DNN+DN      D
Sbjct: 99  KLSSLKNYE-MMKKRKSEKIEMANDKINNDNNNDNNNDNNND 139


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,292,718
Number of Sequences: 2790947
Number of extensions: 3170379
Number of successful extensions: 12447
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12427
Number of HSP's gapped (non-prelim): 15
length of query: 58
length of database: 848,049,833
effective HSP length: 34
effective length of query: 24
effective length of database: 753,157,635
effective search space: 18075783240
effective search space used: 18075783240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)