BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.2 - phase: 0
(377 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 113 8e-24
UniRef100_O22220 Putative non-LTR retroelement reverse transcrip... 94 5e-18
UniRef100_Q8LMT3 Putative retroelement [Oryza sativa] 92 2e-17
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 90 1e-16
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 90 1e-16
UniRef100_Q7XF82 Putative retroelement [Oryza sativa] 89 2e-16
UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa] 87 6e-16
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 86 2e-15
UniRef100_Q7X794 OSJNBa0035I04.8 protein [Oryza sativa] 83 1e-14
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 82 2e-14
UniRef100_Q65WR1 Putative polyprotein [Oryza sativa] 82 2e-14
UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sa... 82 3e-14
UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa] 82 3e-14
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 80 9e-14
UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa] 80 1e-13
UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum] 79 2e-13
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 79 2e-13
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 77 6e-13
UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like... 76 1e-12
UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcrip... 76 2e-12
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 113 bits (283), Expect = 8e-24
Identities = 84/289 (29%), Positives = 137/289 (47%), Gaps = 25/289 (8%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRG----RLREGGVTGSAW 61
GGLGV L+ N A+LGKW WR L + EG W +++ ++Y + RL+ G S +
Sbjct: 657 GGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKYCSDKPLSGLRLKAGS---SHF 712
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W+ ++++++ F +K +GNG T FW D W+G +F LY + I K
Sbjct: 713 WQGVMEVKDD--------FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITK 764
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+++ +++ G + ++RR L + +I N + L + D W +
Sbjct: 765 RITIADLNRKGI----DCMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCKDKLWWTLSKD 820
Query: 182 DGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVI 241
+TVR Y+ L Q+ + W VPLK+ I W +N+ TKDNL++RG
Sbjct: 821 GKFTVRSFYRALKLQQT---SFPNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWR 877
Query: 242 TNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVL 290
D + + C K ET+ HL C + +W I + V V +Q L
Sbjct: 878 KGDNK--CQFCDKVETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDL 924
>UniRef100_O22220 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 94.4 bits (233), Expect = 5e-18
Identities = 93/375 (24%), Positives = 155/375 (40%), Gaps = 53/375 (14%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K +GG G + LQ FN ALL K R D + L ++L SRY L G S
Sbjct: 575 LPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPS 634
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
W+ I + G + K +GNG NT+ W D W+ F ++ RR L I
Sbjct: 635 YAWQSI--------LYGRELLVSGLKKIIGNGENTYVWMDNWI----FDDKPRRPESLQI 682
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEE-ELVVEIRNLLTNVTLQDTQPDVWLWQP 178
D+ + + R L W+E +++ + R + ++ D + W
Sbjct: 683 MVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMA-------SRQDSFCWFG 735
Query: 179 NIGDGYTVRGVYQMLMRQEVHNH--DVVSDAP---------WHKSVPLKVSICAWRLLRN 227
YTV+ Y + RQ VH + P W+ + K+ + W++L+
Sbjct: 736 TNHGLYTVKSEYDLCSRQ-VHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKG 794
Query: 228 RWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQ 287
+D L RGV+ D C KNET++H++ C + +W ++ P
Sbjct: 795 AVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPLARQVW----------ALTPM 842
Query: 288 QVLDH-YYQFVYSS------GCYNPRRS-FLQLIWLCGIWVLSNERNQRLFTNTARTTVQ 339
Q +H + ++++ C+N S L+ + IW+L RN+RLF ++
Sbjct: 843 QSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLS 902
Query: 340 LLENVKITSLKWLKA 354
++ +WLKA
Sbjct: 903 IVGKALEDCKEWLKA 917
>UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]
Length = 764
Score = 92.4 bits (228), Expect = 2e-17
Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 21/272 (7%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSA-W 61
K GGLG ++ NIALL KW +R +E +L ++Y + G + S+ +
Sbjct: 385 KEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQF 444
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W+ + +++ W + S ++GNG T FWSD W+G ++ +Y + K
Sbjct: 445 WKGLHEVKK--------WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADK 496
Query: 122 DLSVGEMHALG-WGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNI 180
+ +V +M G W + R L W ++ N + L++ + D +W+
Sbjct: 497 EKTVSQMCLEGDWYIELRRSLGERDLNEWN-----DLHNTPREIHLKE-ERDCIIWKLTK 550
Query: 181 GDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGV 240
Y + +YQ L V D V W S+PLKV I W +L+ R L + +
Sbjct: 551 NGFYKAKTLYQALSFGGV--KDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQL--KKM 606
Query: 241 ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW 272
+ + C + CG+ E +DHL+ C I +W
Sbjct: 607 KWSGSPNC-KLCGQTEDVDHLMFRCHISQFMW 637
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 89.7 bits (221), Expect = 1e-16
Identities = 97/382 (25%), Positives = 152/382 (39%), Gaps = 68/382 (17%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSAW- 61
K +GGL +R L++FNIALL K WR L L +V ++Y + L + S++
Sbjct: 303 KKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYA 362
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCW---------VGTVSFMERFR 112
W+ I + G + GNG N W D W VGT
Sbjct: 363 WKSI--------LHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCD------ 408
Query: 113 RLYDLSIHKDLSVGEMHALGWGEDGEAWRWRRRLLA--WEEELVVEIRNLLTNVTLQDTQ 170
SI+ L V ++ G RW LL + + IR + ++T +
Sbjct: 409 -----SIYSQLKVSDLLIEG--------RWNEDLLCKLIHQNDIPHIRAIRPSITGAN-- 453
Query: 171 PDVWLWQPNIGDGYTVRGVYQMLMRQEVHNH-----------DVVSDAPWHKSVPLKVSI 219
D W Y+V+ Y +L + H V W ++ P K+
Sbjct: 454 -DAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKH 512
Query: 220 CAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGK-NETIDHLIIHCLIFGDLWQR--IK 276
WR N PT NL RR +IT+DT C R CG+ +E ++HL+ C + ++W++ IK
Sbjct: 513 FWWRSAHNALPTAGNLKRRRLITDDT--CQR-CGEASEDVNHLLFQCRVSKEIWEQAHIK 569
Query: 277 TWIG--VFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTA 334
G + S Q L+ + S+ R + L G W + RN +F N
Sbjct: 570 LCPGDSLMSNSFNQNLESIQKLNQSA------RKDVSLFPFIG-WRIWKMRNDLIFNNKR 622
Query: 335 RTTVQLLENVKITSLKWLKAKN 356
+ ++ I +W ++ N
Sbjct: 623 WSIPDSIQKALIDQQQWKESLN 644
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 89.7 bits (221), Expect = 1e-16
Identities = 93/385 (24%), Positives = 153/385 (39%), Gaps = 71/385 (18%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K GG G + LQ FN ALL K WR L ++ L+ +V SRY L G S
Sbjct: 824 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 883
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + + +GNG TF W+D W+ S R +++
Sbjct: 884 YAWRSI--------LFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 935
Query: 120 HKDLSVGEMHALGWGEDGEAWRWR----RRLLAWEE-ELVVEIRNLLTNVTLQDTQPDVW 174
DL V ++ D + W R L W++ E++++ R L + D +
Sbjct: 936 --DLKVSQL------IDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF-------FKEDSF 980
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVH----------NHDVVSDAPWHKSVPLKVSICAWRL 224
W + Y+V+ Y+ L +Q H + + + D W+ K+ I W+
Sbjct: 981 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1040
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW------------ 272
L P +D L RG+ ++D C+ +NETI+H++ C + +W
Sbjct: 1041 LHGAIPVEDRLRTRGIRSDDG--CLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1098
Query: 273 -QRIKTWIG-VFSVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLF 330
+ T + + + Q L H+ +FV W+ +W L RN LF
Sbjct: 1099 SNSVYTNMSRLIDLTQQNDLPHHLRFVSP--------------WI--LWFLWKNRNALLF 1142
Query: 331 TNTARTTVQLLENVKITSLKWLKAK 355
T L++ +W A+
Sbjct: 1143 EGKGSITTTLVDKAYEAYHEWFSAQ 1167
>UniRef100_Q7XF82 Putative retroelement [Oryza sativa]
Length = 586
Score = 89.0 bits (219), Expect = 2e-16
Identities = 59/198 (29%), Positives = 100/198 (49%), Gaps = 24/198 (12%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAWWRE 64
GG+G+ L+ NIALLGKW W L +++G W ++L +Y ++ L G S +W+
Sbjct: 332 GGMGILDLEIMNIALLGKWLWN-LENKDGWWQEILRDKYLSKKTLLGMKKKPGDSHFWQG 390
Query: 65 IVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLS 124
+++I+N F + SK+LG+G T FW D W+G +F L++++ K +
Sbjct: 391 LMEIKNS--------FYKFCSKKLGDGKQTLFWEDNWIGGRPLALQFPTLFNITTTKQII 442
Query: 125 VGEMHALGWGEDGEAWRWRR-----RLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
V ++ GW +A ++RR RL+ W +I+ +TLQ+ D W+
Sbjct: 443 VSKVMLGGW----DAIKFRRTLHGDRLMEWN-----KIKQSCVGLTLQEGVRDKIWWKLT 493
Query: 180 IGDGYTVRGVYQMLMRQE 197
+TV+ Y L Q+
Sbjct: 494 KDGSFTVKSFYLALKMQQ 511
>UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa]
Length = 389
Score = 87.4 bits (215), Expect = 6e-16
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 88 LGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSVGEMHALGWGEDGEAWRWRRRLL 147
+GNG NT FW D W+G E+FR LY++++ K ++V ++ +G ++ ++RR +L
Sbjct: 15 VGNGRNTLFWEDNWIGGKPLAEQFRDLYNITLTKKITVADVKQVGI----DSIKFRRDVL 70
Query: 148 AWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQML-MRQEVHNHDVVSD 206
+++I+ +++ L+D D W +TV+ + L M+Q + H +
Sbjct: 71 G---NKLLKIKQSWSDLVLEDGTRDTLRWNLTKDGKFTVKSFHTALKMQQVIFPHKKI-- 125
Query: 207 APWHKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCL 266
W VPLK+ I W +N+ TKDNL +RG + + C + ET+ L +C
Sbjct: 126 --WGLKVPLKIKIFIWMFTKNKILTKDNLFKRG--WRKGKANCQFCDQTETLQPL-FYCP 180
Query: 267 IFGDLWQRIKTWIGVFSVDPQQVL 290
+ LW +K + + SV +Q L
Sbjct: 181 LARLLWNIVKCALNINSVLNRQDL 204
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 85.5 bits (210), Expect = 2e-15
Identities = 75/276 (27%), Positives = 116/276 (41%), Gaps = 27/276 (9%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREG-GVTGSAW 61
K VGGLG + ++ FNIALLGK WR + +++ L KV SRY + L G S
Sbjct: 848 KAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFA 907
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGT--VSFMERFRRLYDLSI 119
W+ I + Q I ++ I +GNG W+D W+G + +R + +S
Sbjct: 908 WKSIYEAQVLI--------KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQ 959
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ S+ + L DG W W L + + N+L D + W+ +
Sbjct: 960 YAANSIHVVKDL-LLPDGRDWNWNLVSLLFPDNTQ---ENILALRPGGKETRDRFTWEYS 1015
Query: 180 IGDGYTVRGVYQMLMR--------QEV--HNHDVVSDAPWHKSVPLKVSICAWRLLRNRW 229
Y+V+ Y ++ QEV + D + W VP K+ WR + N
Sbjct: 1016 RSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCL 1075
Query: 230 PTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHC 265
NL R + + CVR ET++HL+ C
Sbjct: 1076 SVASNLAYRHLAREKS--CVRCPSHGETVNHLLFKC 1109
>UniRef100_Q7X794 OSJNBa0035I04.8 protein [Oryza sativa]
Length = 357
Score = 82.8 bits (203), Expect = 1e-14
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLG++ L+ N +L KW ++ L + EG+W +L +Y ++ +G S +
Sbjct: 119 KECGGLGIQNLELQNKYMLSKWLYK-LWNEEGVWQNLLRRKYLSKKTLTHVDKKSGDSHF 177
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W ++ ++N F S ++ NG FW D W G F R+ LY+L I+K
Sbjct: 178 WSGLMMVKN--------IFLSCGSLKVHNGTQVRFWEDKWNGNTPFAARYPALYNLVINK 229
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+ SV A+ + +RR ++ + +E+ + + ++ L + Q +LW+
Sbjct: 230 NESV----AVVMSKRPLKVSFRRAMVGHNLKAWLEVVSKVISIKLTE-QNGTFLWEIQKN 284
Query: 182 DGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVR 237
++V +Y+ +M +EV D W +PLK+ I W L TKDNL +
Sbjct: 285 GCFSVNSMYKAIMYREVVPK---KDMIWKLRIPLKIKIFLWYLKNGVILTKDNLAK 337
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 82.4 bits (202), Expect = 2e-14
Identities = 90/373 (24%), Positives = 144/373 (38%), Gaps = 47/373 (12%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR-EGGVTGS 59
+ K +GG G + LQ FN ALL K WR D + + ++ SRY L G S
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + + +GNG T W D W+ F RR +L
Sbjct: 858 YTWRSI--------LYGRELLNGGLKRLIGNGEQTNVWIDKWL----FDGHSRRPMNLHS 905
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLA-----WEEELVVEIRNLLTNVTLQDTQPDVW 174
++ + H + D W + L + +L++ R L+++ D +
Sbjct: 906 LMNIHMKVSHLI----DPLTRNWNLKKLTELFHEKDVQLIMHQRPLISS-------EDSY 954
Query: 175 LWQPNIGDGYTVRGVYQMLMRQEVHN----HDV------VSDAPWHKSVPLKVSICAWRL 224
W YTV+ Y+ R+ N DV + D W K+ + W+
Sbjct: 955 CWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKA 1014
Query: 225 LRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLW--QRIKTWIGVF 282
L+ +D L RG+ T D C+ + ETI+HL+ C +W I+ F
Sbjct: 1015 LKGALAVEDRLRSRGIRTADG--CLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGF 1072
Query: 283 SVDPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLE 342
++H Q + G PR WL +W + RN+ LF T T+ +++
Sbjct: 1073 GTSIFSNINHVIQNSQNFGI--PRHMRTVSPWL--LWEIWKNRNKTLFQGTGLTSSEIVA 1128
Query: 343 NVKITSLKWLKAK 355
W+ A+
Sbjct: 1129 KAYEECNLWINAQ 1141
>UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]
Length = 1023
Score = 82.0 bits (201), Expect = 2e-14
Identities = 84/361 (23%), Positives = 136/361 (37%), Gaps = 54/361 (14%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSAWWREI 65
GGLGV L +F AL +W W D W + + G R
Sbjct: 692 GGLGVLSLDKFTRALRLRWLWNEWRDPSKPWVGLETPCDGVDR----------------- 734
Query: 66 VKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSV 125
F S +G+G T FW W+ + +Y++S ++ S+
Sbjct: 735 ------------DLFAASTKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSL 782
Query: 126 GEMHALGWGEDGEAWRWRRRLLAWEE------ELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ G++ ++W L A + +V + + NV L +PD +W+
Sbjct: 783 RQ------GKEDDSWVHDLTLDAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFT 836
Query: 180 IGDGYTVRGVY--QMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVR 237
YT Y Q L + + ++ W P K AW +++NR T D L
Sbjct: 837 SSGHYTASSAYHAQCLGAPNTNFNSLI----WKVWAPGKCKFHAWLIIQNRVWTSDRLAT 892
Query: 238 RGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLD----HY 293
RG N C ET HL+ C +W+ + TW G ++P Q + H
Sbjct: 893 RGWRNNGH--CPLCRCDTETALHLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQ 950
Query: 294 YQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLK 353
+ ++ P++ LI L +W + ERN+R+F + T LL +K + W
Sbjct: 951 WWESLANTPGIPKKGLRSLILLV-VWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWAL 1009
Query: 354 A 354
A
Sbjct: 1010 A 1010
>UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sativa]
Length = 1143
Score = 81.6 bits (200), Expect = 3e-14
Identities = 84/361 (23%), Positives = 135/361 (37%), Gaps = 54/361 (14%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSAWWREI 65
GGLGV L +F AL +W W D W + + G R
Sbjct: 812 GGLGVLSLDKFTRALRLRWLWNEWRDPSKPWVGLETPCDGVDR----------------- 854
Query: 66 VKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSV 125
F S +G+G T FW W+ + +Y++S ++ S+
Sbjct: 855 ------------DLFAASTKITVGDGNTTRFWDSAWINGQRPKDLMPLVYEISKNRKKSL 902
Query: 126 GEMHALGWGEDGEAWRWRRRLLAWEE------ELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ G++ ++W L A + +V + + NV L +PD +W+
Sbjct: 903 RQ------GKEDDSWVHDLTLDAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFT 956
Query: 180 IGDGYTVRGVY--QMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVR 237
YT Y Q L + + ++ W P K AW +++NR T D L
Sbjct: 957 SSGHYTASSAYHAQCLGAPNTNFNSLI----WKVWAPGKCKFHAWLIIQNRVWTSDRLAT 1012
Query: 238 RGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLD----HY 293
RG N C ET HL+ C +W+ + TW G +P Q + H
Sbjct: 1013 RGWRNNGH--CPLCRCDTETALHLVAMCRYTKRIWRLVATWAGYQQFEPAQWEEARSVHQ 1070
Query: 294 YQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLK 353
+ ++ P++ LI L +W + ERN+R+F + T LL +K + W
Sbjct: 1071 WWESLANTPGIPKKGLRSLILLV-VWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWAL 1129
Query: 354 A 354
A
Sbjct: 1130 A 1130
>UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]
Length = 1189
Score = 81.6 bits (200), Expect = 3e-14
Identities = 84/361 (23%), Positives = 137/361 (37%), Gaps = 54/361 (14%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTGSAWWREI 65
GGLGV L +F AL +W W D W + + G R
Sbjct: 858 GGLGVLSLDKFTRALRLRWLWNEWRDPSKPWVGLETPCDGVDR----------------- 900
Query: 66 VKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSV 125
+ F S +G+G T FW W+ + +Y++S ++ S+
Sbjct: 901 ------------NLFAASTKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSL 948
Query: 126 GEMHALGWGEDGEAWRWRRRLLAWEE------ELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ G++ ++W L A + +V + + NV L +PD +W+
Sbjct: 949 RQ------GKEDDSWVHDLTLDAGLSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFT 1002
Query: 180 IGDGYTVRGVY--QMLMRQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVR 237
YT Y Q L + + ++ W P K AW +++NR T D L
Sbjct: 1003 SSGHYTASSAYHAQCLGAPNTNFNSLI----WKVWAPGKCKFHAWLIIQNRVWTSDRLAT 1058
Query: 238 RGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLD----HY 293
RG N C ET HL+ C +W+ + TW G ++P Q + H
Sbjct: 1059 RGWRNNGH--CPLCRCDTETAFHLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQ 1116
Query: 294 YQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLKWLK 353
+ ++ P++ LI L +W + ERN+R+F + T LL +K + W
Sbjct: 1117 WWESLANTPGIPKKGLRSLILLV-VWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWAL 1175
Query: 354 A 354
A
Sbjct: 1176 A 1176
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 80.1 bits (196), Expect = 9e-14
Identities = 97/377 (25%), Positives = 150/377 (39%), Gaps = 50/377 (13%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRL-REGGVTGS 59
+ K GGLG R + FN ALL K WR L + L+ +++ SRY L + G S
Sbjct: 694 LPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPS 753
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
WR I + G + KR+GNG + W D W+ R + + I
Sbjct: 754 FGWRSI--------LHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGL--RAPWIKNPII 803
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEEL----VVEIRNLLTNVTLQDTQPDVWL 175
+ DL V ++ D E WR L EE+ VV+IR V+L D W+
Sbjct: 804 NVDLLVSDL------IDYEKRDWRLDKL--EEQFFPDDVVKIRENRPVVSLD----DFWI 851
Query: 176 WQPNIGDGYTVRGVYQMLMRQEVHNHDV----------VSDAPWHKSVPLKVSICAWRLL 225
W+ N Y+V+ Y + Q + + + W K+ + W++L
Sbjct: 852 WKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVL 911
Query: 226 RNRWPTKDNLVRRGV-ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSV 284
P D L RG+ + + Q C GC + E+I H++ C +W + +
Sbjct: 912 SGAIPVVDLLSYRGMKLDSRCQTC--GC-EGESIQHVLFSCSFPRQVWAMSNIHVPLLGF 968
Query: 285 DPQQVLDHYYQFVYS----SGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQL 340
+ V + Y F+ + RRSF +IW IW RN F T ++
Sbjct: 969 ECGSVYANLYHFLINRDNLKWPVELRRSFPWIIW--RIW---KNRNLFFFEGKRFTVLET 1023
Query: 341 LENVKITSLKWLKAKNV 357
+ V+ W A+ V
Sbjct: 1024 ILKVRKDVEDWFAAQVV 1040
>UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa]
Length = 710
Score = 79.7 bits (195), Expect = 1e-13
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-SAW 61
K GGLG++ L N +L KW ++ L + EG+W +L +Y ++ G S +
Sbjct: 472 KECGGLGIQNLDLQNKCMLSKWLYK-LWNEEGVWQNLLRRKYLSKKTLTHVEKKPGDSHF 530
Query: 62 WREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHK 121
W ++ ++N + G S ++ NG FW D W G F LY+L I+K
Sbjct: 531 WSGLMMVKNILLSCG--------SLKVHNGTQIRFWEDKWNGNTPFAACCPALYNLVINK 582
Query: 122 DLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIG 181
+ SV A+ + +RR ++ + +E+ + + ++ L + Q D +LW+
Sbjct: 583 NESV----AVVMSKRLLKVSFRRAIVGHNLKAWLEVVSKVISIKLTE-QNDTFLWEIQKN 637
Query: 182 DGYTVRGVYQMLM-RQEVHNHDVVSDAPWHKSVPLKVSICAWRLLRNRWPTKDNLVRR 238
++V +Y+ +M R+ V D++ W +PLK+ I W L TKDNL +R
Sbjct: 638 GHFSVNSMYKAIMYREVVPKRDMI----WKLIIPLKIKIFLWYLKNGVILTKDNLAKR 691
>UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum]
Length = 327
Score = 79.3 bits (194), Expect = 2e-13
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 22/196 (11%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVT--G 58
+ K GGLG++ L N LL KW WR + GLW +V+ ++YG T G
Sbjct: 131 LPKQYGGLGIKDLALHNKCLLLKWHWRYNQEAAGLWKEVIQAKYGSDSHWCSNKVSTSYG 190
Query: 59 SAWWREIVKIQNGIGVEGGSW--FEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYD 116
+ WR+I K+ W F S +GNG + FW D W+G M F ++
Sbjct: 191 TGVWRDIRKL----------WEIFFGDASLMVGNGEHIQFWKDIWLGDTPLMNVFPSIFL 240
Query: 117 LSIHKDLSVGEMHALGWGEDGEAWR--WRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVW 174
++ H D ++ + + W RR L WE E V + + + + D
Sbjct: 241 IASHPDSTISQY------REDNVWNLILRRNLNDWELEEVFSLMATIQTSAINSQRRDKL 294
Query: 175 LWQPNIGDGYTVRGVY 190
+W+ + YTV+ Y
Sbjct: 295 IWRHSRDGSYTVKACY 310
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 79.3 bits (194), Expect = 2e-13
Identities = 88/363 (24%), Positives = 145/363 (39%), Gaps = 42/363 (11%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR--EGGVTGSAWWR 63
G LG + L +FN ALL K WR L + + L ++ Y LR +GG W
Sbjct: 1195 GDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGW-- 1252
Query: 64 EIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDL 123
N I EG ++ + RLG+G T W D W+ T+ + D +D+
Sbjct: 1253 ------NSI-QEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILD----EDM 1301
Query: 124 SVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQD-TQPDVWLWQPNIGD 182
V ++ W E+ W + +E L E + L ++ L + D + W
Sbjct: 1302 KVADL----WRENKREW----DPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNT 1353
Query: 183 GYTVRGVYQMLMRQEVHNHDVVS----DAP-----WHKSVPLKVSICAWRLLRNRWPTKD 233
YTVR Y + + ++++ D P W + K+ WR L T
Sbjct: 1354 QYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTT 1413
Query: 234 NLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQVLDHY 293
L R + + T C R C +ETI+H+I C +W R + G + L+
Sbjct: 1414 QLRNRNIPADPT--CQRCCNADETINHIIFTCSYAQVVW-RSANFSGSNRLCFTDNLEEN 1470
Query: 294 YQFVYSSGCYN---PRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITSLK 350
+ + G N P + L W+ +W L RN+ LF R ++ + + + +
Sbjct: 1471 IRLIL-QGKKNQNLPILNGLMPFWI--MWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATE 1527
Query: 351 WLK 353
W++
Sbjct: 1528 WVE 1530
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 77.4 bits (189), Expect = 6e-13
Identities = 72/284 (25%), Positives = 110/284 (38%), Gaps = 40/284 (14%)
Query: 6 GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLREGGVTG-----SA 60
GGLG+R+ Q+ N ALL K WR + D LW +++ Y Q +R+G T S+
Sbjct: 376 GGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQ--DVRDGAWTKVRSVCSS 433
Query: 61 WWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIH 120
WR + + + G SW +G+G FW D W+ + E
Sbjct: 434 TWRSVALGMREVVIPGLSWV-------IGDGREILFWMDKWLTNIPLAE----------- 475
Query: 121 KDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQD-------TQPDV 173
L V E A GW + A RR + W+ + + + LQ D
Sbjct: 476 --LLVQEPPA-GW-KGMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDR 531
Query: 174 WLWQPNIGDGYTVRGVYQMLMRQEVHNHDV--VSDAPWHKSVPLKVSICAWRLLRNRWPT 231
W + + V Y L R E D+ D W + P +V + W + + T
Sbjct: 532 ISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMT 591
Query: 232 KDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRI 275
RR + T T +C G E+I H++ C +W R+
Sbjct: 592 NQERHRRHLST--TTICQVCKGAKESIIHVLRDCPAMEGIWLRL 633
>UniRef100_Q9FL83 Non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 76.3 bits (186), Expect = 1e-12
Identities = 86/357 (24%), Positives = 136/357 (38%), Gaps = 54/357 (15%)
Query: 3 KGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRG--RLREGGVTGSA 60
K GGLG+R L+E N K W+ + LW K + +++ GS
Sbjct: 869 KDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSW 928
Query: 61 WWREIVKIQNGIGVEGGSWFEESISK-RLGNGFNTFFWSDCWVGTVSFMERF--RRLYDL 117
W++++K + +++SK +GNG T FW D W +ER R L DL
Sbjct: 929 IWKKLLKYRE---------VAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDL 979
Query: 118 SIHKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQ 177
I + ++V EAW RR+ RN + NV ++D W +
Sbjct: 980 GISRRMTV-----------EEAWTNRRQR---------RHRNDVYNV-IEDALKKSWDTR 1018
Query: 178 PNIGDGYTVRG---VYQMLMRQE---VHNHDVVSDAPWHKSV-----PLKVSICAWRLLR 226
D RG V++ H + PWHK + K S C+W
Sbjct: 1019 TETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAH 1078
Query: 227 NRWPTKDNLVR--RGVITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSV 284
R PT D ++ G+ T+ C+ G ET DHL C +W + G+F
Sbjct: 1079 GRLPTGDRMINWANGIATD----CIFCQGTLETRDHLFFTCSFTSVIWVDLAR--GIFKT 1132
Query: 285 DPQQVLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLL 341
+ + +S + + ++ I+++ ERN R T QL+
Sbjct: 1133 QYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLV 1189
>UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 75.9 bits (185), Expect = 2e-12
Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 34/368 (9%)
Query: 1 MSKGVGGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR-EGGVTGS 59
++K GGLG R ++ FN ALL K WR L L+ + SRY + L + GV S
Sbjct: 622 LAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEADLGVRPS 681
Query: 60 AWWREIVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSI 119
I + G + + K +GNG + W D W+ ++ +R + S+
Sbjct: 682 YACCSI--------LFGRELLAKGLRKEVGNGKSLNVWMDPWIFDIAPRLPLQRHF--SV 731
Query: 120 HKDLSVGEMHALGWGEDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPN 179
+ DL V ++ + E W+R LL EE L+T D W+W
Sbjct: 732 NLDLKVNDL------INFEDRCWKRDLL--EELFYPTDVELITKRNPVVNMDDFWVWLHA 783
Query: 180 IGDGYTVRGVYQMLMRQE----------VHNHDVVSDAPWHKSVPLKVSICAWRLLRNRW 229
Y+V+ Y + + + + + + + W K+ + WR+L
Sbjct: 784 KTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAAL 843
Query: 230 PTKDNLVRRGV-ITNDTQLCVRGCGKNETIDHLIIHCLIFGDLWQRIKTWIGVFSVDPQQ 288
P D ++RRG+ I Q+C + E+ +H++ C + +W F
Sbjct: 844 PVADQIIRRGMSIDPRCQIC---GDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNAS 900
Query: 289 VLDHYYQFVYSSGCYNPRRSFLQLIWLCGIWVLSNERNQRLFTNTARTTVQLLENVKITS 348
+ + QF++ ++ W +W L RN+ F + + ++ +
Sbjct: 901 IFAN-IQFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPLNSIVKIQEDT 959
Query: 349 LKWLKAKN 356
L+W +A++
Sbjct: 960 LEWFQAQS 967
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.141 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 699,585,234
Number of Sequences: 2790947
Number of extensions: 30416272
Number of successful extensions: 72430
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 72044
Number of HSP's gapped (non-prelim): 316
length of query: 377
length of database: 848,049,833
effective HSP length: 129
effective length of query: 248
effective length of database: 488,017,670
effective search space: 121028382160
effective search space used: 121028382160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)
Medicago: description of AC127021.2