BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127021.10 + phase: 0 /pseudo/partial
(264 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M1C6 Hypothetical protein T2O9.150 [Arabidopsis thal... 106 7e-22
UniRef100_Q6AUQ5 Putative polyprotein [Oryza sativa] 101 2e-20
UniRef100_Q8SAZ8 Putative polyprotein [Oryza sativa] 101 2e-20
UniRef100_Q947Z9 Putative retroelement [Oryza sativa] 100 6e-20
UniRef100_Q84VH8 Gag-pol polyprotein [Glycine max] 99 8e-20
UniRef100_Q84VI2 Gag-pol polyprotein [Glycine max] 99 1e-19
UniRef100_Q84VH6 Gag-pol polyprotein [Glycine max] 99 1e-19
UniRef100_Q8L4T8 Putative retroelement [Oryza sativa] 99 1e-19
UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana] 97 3e-19
UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [... 97 3e-19
UniRef100_Q84VI4 Gag-pol polyprotein [Glycine max] 97 4e-19
UniRef100_Q94H19 Putative gag-pol polyprotein, 3'-partial [Oryza... 97 6e-19
UniRef100_Q7XW17 OSJNBb0013O03.1 protein [Oryza sativa] 96 7e-19
UniRef100_Q75GL6 Hypothetical protein OSJNBa0010N03.2 [Oryza sat... 96 7e-19
UniRef100_Q7XH50 Putative copia-type pol polyprotein [Oryza sativa] 96 9e-19
UniRef100_Q84VI0 Gag-pol polyprotein [Glycine max] 94 5e-18
UniRef100_Q8LM60 Putative retroelement [Oryza sativa] 93 6e-18
UniRef100_Q8H8L1 Putative retroelement [Oryza sativa] 93 6e-18
UniRef100_Q84T51 Putative copia-type pol polyprotein [Oryza sativa] 93 6e-18
UniRef100_Q6F2W2 Putative integrase [Oryza sativa] 93 8e-18
>UniRef100_Q9M1C6 Hypothetical protein T2O9.150 [Arabidopsis thaliana]
Length = 1339
Score = 106 bits (264), Expect = 7e-22
Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 11/221 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
P+F+G + +W M +F+ ELW ++E+G+ + + + +R A ++
Sbjct: 13 PRFDG---YYDFWSMTMENFLRS--RELWRLVEEGIPAIVVGTTPVSEAQR---SAVEEA 64
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K K++ + +I R + DKST+KA++ S+ ++GS KVK A+ L ++EL
Sbjct: 65 KLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFEL 124
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK+ E I+ R T+V+ ++ + S VSKILRSL ++ V +IEE+ DL
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIA---LPSKGK 230
+TLS+++L SL VHE LN H +++ + PS+G+
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGR 225
>UniRef100_Q6AUQ5 Putative polyprotein [Oryza sativa]
Length = 1398
Score = 101 bits (251), Expect = 2e-20
Identities = 67/245 (27%), Positives = 128/245 (51%), Gaps = 17/245 (6%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 15 DGTDFSHWYSRMQSYIMAEDYDIWRKVSHPY----------VIPETINTAAEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R +Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRLDYNRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKI----LRSLP-SRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I L L S W KVT+I+E+ ++
Sbjct: 125 REALDDYLSRFNKILSDLRSVDSSYDANYPQSEISHHFLNGLDMSIWEIKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI--ALPSKGKTSKSSKAYKASESEEESPDG 250
+TL+++ L + LK HEM++ + KS ++ +L +SKSS + + ++ +
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSLDVDASSSKSSFLAIFNATSDDQLEQ 244
Query: 251 DSDED 255
+ED
Sbjct: 245 IEEED 249
>UniRef100_Q8SAZ8 Putative polyprotein [Oryza sativa]
Length = 669
Score = 101 bits (251), Expect = 2e-20
Identities = 69/240 (28%), Positives = 123/240 (50%), Gaps = 23/240 (9%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPA 68
S K FNG +FS W + M S+IM D ++W + I I+T A
Sbjct: 8 STKPHVFNGT--DFSHWCSRMQSYIMAEDYDIWRKVSHAY----------VIPEVINTAA 55
Query: 69 QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVH 128
+K ++++ K R I+++ I R++Y ++ TA ++ +L +G+ +KE + +
Sbjct: 56 EKTAFEQNCKARNILLSGISRSDYDRVPHLETAHEIWNALKNFHQGTNNIKELRRDLFKK 115
Query: 129 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKV 183
+Y F MK E++++ SRF ++S L+ + SY V+ S+I R S W V
Sbjct: 116 EYIKFEMKYREALDDYLSRFNKILSDLRSVDSSYDVNYPQSEISRHFLNGLDMSIWEMNV 175
Query: 184 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 243
T+I+E+ +++TL+++ L + LK HEM++ + KS ++ +S SS AS S
Sbjct: 176 TSIQESVNMSTLTLDSLYTKLKTHEMNIRSRKVDSKSSALV------SSSSSLVVDASSS 229
>UniRef100_Q947Z9 Putative retroelement [Oryza sativa]
Length = 1660
Score = 99.8 bits (247), Expect = 6e-20
Identities = 58/211 (27%), Positives = 112/211 (52%), Gaps = 15/211 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 159 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHSY----------VIPEAINTAAEKTAFEQNC 208
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K I+++ I R++Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 209 KSHNILLSGISRSDYDRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 268
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 269 GEALDDYLSRFNKILSDLRSIDSSYDTNYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 328
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI 223
+TL+++ L + LK HEM++ + KS ++
Sbjct: 329 STLTLDSLYTKLKTHEMNVLSRKVDSKSSAL 359
>UniRef100_Q84VH8 Gag-pol polyprotein [Glycine max]
Length = 1576
Score = 99.4 bits (246), Expect = 8e-20
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>UniRef100_Q84VI2 Gag-pol polyprotein [Glycine max]
Length = 1576
Score = 99.0 bits (245), Expect = 1e-19
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK L + EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>UniRef100_Q84VH6 Gag-pol polyprotein [Glycine max]
Length = 1577
Score = 99.0 bits (245), Expect = 1e-19
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>UniRef100_Q8L4T8 Putative retroelement [Oryza sativa]
Length = 742
Score = 98.6 bits (244), Expect = 1e-19
Identities = 70/264 (26%), Positives = 133/264 (49%), Gaps = 32/264 (12%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +F +W + M S+IM D ++W + + I +I+T A K ++ +
Sbjct: 13 DGTDFPYWCSKMQSYIMAKDLDIWKKVSNPY----------VIPDQINTAALKTEFENNC 62
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K I+++ I R+++ ++S TA + +L +G+ +KE + +Y F MK
Sbjct: 63 KAHNILLSGISRSDFDRVSHLQTANEISIALRNFHQGTTNIKELHRDLFKKEYIKFEMKH 122
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY ++ SK+ R S W KVT+I+E+ D+
Sbjct: 123 GEALDDYLSRFNKILSDLRSVDSSYDINYTQSKVSRHFLNGLDMSIWEMKVTSIQESVDM 182
Query: 193 NTLSVEDLVSSLKVHEMSL-----------NEHETSKKSKSIALPSKGKTSKS-----SK 236
+TL+++ L + LK HEM++ N+ E +K++K + KT ++ K
Sbjct: 183 STLTLDSLYTKLKTHEMNILSPLNKGKKKDNDGEKTKENKPKSTFKGEKTKENLKKMFEK 242
Query: 237 AYKASESEEESPDGDSDEDQSCKD 260
Y A E + DG+S+++ K+
Sbjct: 243 VYAAFE-PLSNIDGESEDEDKGKN 265
>UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana]
Length = 1334
Score = 97.4 bits (241), Expect = 3e-19
Identities = 62/207 (29%), Positives = 108/207 (51%), Gaps = 9/207 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
PKF+GD E ++ N+ +E WDI+E G+ E + T +K
Sbjct: 10 PKFDGDYEHWAMLMENLIR-----SKEWWDIIETGIPR---PERNVILTGAQRTELAEKT 61
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K H K++ + ASI +T + K T+K ++ S+ ++G+ +V+ A+ L +E+
Sbjct: 62 VKDH-KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEV 120
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK E+I +SR + + ++ L + S V KILR+L ++ V AIEE+ ++
Sbjct: 121 LEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNI 180
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKK 219
L+V+ L SSL VHE +L+ H+ ++
Sbjct: 181 KELTVDGLQSSLMVHEQNLSRHDVEER 207
>UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana]
Length = 1334
Score = 97.4 bits (241), Expect = 3e-19
Identities = 62/207 (29%), Positives = 108/207 (51%), Gaps = 9/207 (4%)
Query: 13 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 72
PKF+GD E ++ N+ +E WDI+E G+ E + T +K
Sbjct: 10 PKFDGDYEHWAMLMENLIR-----SKEWWDIIETGIPR---PERNVILTGAQRTELAEKT 61
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
K H K++ + ASI +T + K T+K ++ S+ ++G+ +V+ A+ L +E+
Sbjct: 62 VKDH-KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEV 120
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
MK E+I +SR + + ++ L + S V KILR+L ++ V AIEE+ ++
Sbjct: 121 LEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNI 180
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKK 219
L+V+ L SSL VHE +L+ H+ ++
Sbjct: 181 KELTVDGLQSSLMVHEQNLSRHDVEER 207
>UniRef100_Q84VI4 Gag-pol polyprotein [Glycine max]
Length = 1574
Score = 97.1 bits (240), Expect = 4e-19
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 132
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFEN 136
Query: 133 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKDL 192
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D ++
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLNT 243
Query: 253 DE 254
DE
Sbjct: 244 DE 245
>UniRef100_Q94H19 Putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 96.7 bits (239), Expect = 6e-19
Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 14/255 (5%)
Query: 2 TADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 61
T+ T SGKAP FNG +++ WK M + ++ +W I+E G ++ D
Sbjct: 26 TSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQKPEDPTKEDD 83
Query: 62 RRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEA 121
H AQ +I++++ +E+ ++ D +AK ++ +L EG+ V+E+
Sbjct: 84 ENEHKNAQAA---------NVILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRES 134
Query: 122 KALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVVSDHVSKILRSLPSRWR 180
K +L Q+E F M D ES +MY +V+ ++ L K V K++R++ R
Sbjct: 135 KVEILKGQFERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNS 194
Query: 181 PKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKA 240
VT I E D TL+ DL+ + H+M + E+ + + I S K A KA
Sbjct: 195 TLVTIIRERPDYKTLTPHDLLGRILAHDMLV--QESKEVIQYINQSSTTSIKKEDLALKA 252
Query: 241 SESEEESPDGDSDED 255
E EEES S E+
Sbjct: 253 KEEEEESRKSKSKEE 267
>UniRef100_Q7XW17 OSJNBb0013O03.1 protein [Oryza sativa]
Length = 832
Score = 96.3 bits (238), Expect = 7e-19
Identities = 64/248 (25%), Positives = 125/248 (49%), Gaps = 20/248 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T +K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTTTEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ +L + + +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRSDYDRVAHLQTAHEIWTTLSNFHQETNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDSSYYANYPQSEISRHFLNSLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI-----ALPSKGKTSKSSKAYKASESEEES 247
+TL ++ L + LK HEM++ + KS ++ +L +SKSS + + ++
Sbjct: 185 STLILDSLHTKLKTHEMNVLSRKVDYKSSALVSSSSSLDVDASSSKSSFLSVFNATSDDQ 244
Query: 248 PDGDSDED 255
+ +ED
Sbjct: 245 LEQIEEED 252
>UniRef100_Q75GL6 Hypothetical protein OSJNBa0010N03.2 [Oryza sativa]
Length = 446
Score = 96.3 bits (238), Expect = 7e-19
Identities = 65/242 (26%), Positives = 120/242 (48%), Gaps = 20/242 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM + ++W + I I+T A K ++ +
Sbjct: 15 DGTDFSHWCSRMQSYIMAENYDIWRKVSHPY----------VIPEVINTAAAKTEFELNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ IPR++Y +++ TA ++ +L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGIPRSDYDRVAHLQTAHEIWIALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 252
TL+++ L + LK HEM++ + K K + A AS +ES D +
Sbjct: 185 TTLTLDSLYTKLKTHEMNILSRTDEDEDK-----GKQVVDLAFIARNASSDVDESDDDNE 239
Query: 253 DE 254
++
Sbjct: 240 EK 241
>UniRef100_Q7XH50 Putative copia-type pol polyprotein [Oryza sativa]
Length = 998
Score = 95.9 bits (237), Expect = 9e-19
Identities = 66/248 (26%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEVINTAAAKTKFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ +L +G+ +KE + + +Y F +K
Sbjct: 65 KARNILLSGISRSDYDRVAHFQTAHEIWNALSNFHQGTNNIKELRRAIFKKEYIKFEIKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKI----LRSLP-SRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I L L S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDFSYYANYPQSEISHHFLNGLDMSIWEIKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSI-----ALPSKGKTSKSSKAYKASESEEES 247
+TL+++ L + LK HEM++ + KS ++ +L +SKSS + + ++
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDASSSKSSFLAIFNATSDDQ 244
Query: 248 PDGDSDED 255
+ +ED
Sbjct: 245 LEQIEEED 252
>UniRef100_Q84VI0 Gag-pol polyprotein [Glycine max]
Length = 1576
Score = 93.6 bits (231), Expect = 5e-18
Identities = 69/243 (28%), Positives = 115/243 (46%), Gaps = 19/243 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 72
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAK-AMFASLCANFEGSKKVKEAKALMLVHQYE 131
+ K + + + + ++ + AK A L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFE 136
Query: 132 LFRMKDDESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSLPSRWRPKVTAIEEAKD 191
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D
Sbjct: 137 NLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQD 196
Query: 192 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 251
+ + V++L+ SL+ E+ L++ KKSK++A S E EE+ D D
Sbjct: 197 ICNMRVDELIGSLQTFELGLSD-RNEKKSKNLAFVSN------------DEGEEDEYDLD 243
Query: 252 SDE 254
+DE
Sbjct: 244 TDE 246
>UniRef100_Q8LM60 Putative retroelement [Oryza sativa]
Length = 1499
Score = 93.2 bits (230), Expect = 6e-18
Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRSDYDRVTHFRTAHEIWNVLSNFHQGTNNIKELRRDIFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++ + SRF ++S L+ + SY + S+I R S W KVT+I+++ ++
Sbjct: 125 GEALNDYLSRFIKILSYLRSVDFSYDTNYPQSEISRHFLNGLDMSIWEMKVTSIQKSVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 243
+TL+++ L LK HEM++ + SKS AL S S A+ + S
Sbjct: 185 STLTLDSLYRKLKTHEMNVLSRKVD--SKSSALVSSSSYSLDVDAFSSKPS 233
>UniRef100_Q8H8L1 Putative retroelement [Oryza sativa]
Length = 1099
Score = 93.2 bits (230), Expect = 6e-18
Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 18 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 77
D +FS W + M S+IM D ++W + I I+T A+K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 137
K R I+++ I R++Y +++ TA ++ L +G+ +KE + + +Y F MK
Sbjct: 65 KARNILLSGISRSDYDRVTHFRTAHEIWNVLSNFHQGTNNIKELRRDIFKKEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++ + SRF ++S L+ + SY + S+I R S W KVT+I+++ ++
Sbjct: 125 GEALNDYLSRFIKILSYLRSVDFSYDTNYPQSEISRHFLNGLDMSIWEMKVTSIQKSVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 243
+TL+++ L LK HEM++ + SKS AL S S A+ + S
Sbjct: 185 STLTLDSLYRKLKTHEMNVLSRKVD--SKSSALVSSSSYSLDVDAFSSKPS 233
>UniRef100_Q84T51 Putative copia-type pol polyprotein [Oryza sativa]
Length = 2027
Score = 93.2 bits (230), Expect = 6e-18
Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 23/257 (8%)
Query: 2 TADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 61
T+ T SGKAP FNG +++ WK M + ++ +W I+E G + + D
Sbjct: 26 TSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPENPTKEDD 83
Query: 62 RRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEA 121
H AQ I++++ +E+ ++ D +AK ++ +L EG+ V+E+
Sbjct: 84 ENEHKNAQAA---------NAILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRES 134
Query: 122 KALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVVSDHVSKILRSLPSRWR 180
K +L Q+E F M D ES +MY R +V+ ++ L K V K++R++ R
Sbjct: 135 KVEILKGQFERFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNS 194
Query: 181 PKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHE-----------TSKKSKSIALPSKG 229
VT I E D TL+ DL+ + H+M + E + T+ K + +AL +K
Sbjct: 195 TLVTIIRERPDYKTLTPHDLLGRILAHDMLVQESKDVIQYINQSSTTNIKKEDLALKAKE 254
Query: 230 KTSKSSKAYKASESEEE 246
+ ++ K+ +E ++E
Sbjct: 255 EEEENRKSKSKAEIDDE 271
>UniRef100_Q6F2W2 Putative integrase [Oryza sativa]
Length = 1425
Score = 92.8 bits (229), Expect = 8e-18
Identities = 62/240 (25%), Positives = 122/240 (50%), Gaps = 20/240 (8%)
Query: 26 KTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVA 85
K+ M S+IM D ++W + I I+T A K ++++ K R I+++
Sbjct: 86 KSRMQSYIMAEDYDIWRKVSHPY----------VIPEEINTAALKTEFEQNCKARNILLS 135
Query: 86 SIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMY 145
I R++Y +++ TA ++ +L +G+ +KE + +L +Y F MK E++++
Sbjct: 136 GISRSDYDRVAHLQTAHEIWIALSNFHQGTNNIKELRRDLLKKEYIKFEMKLGEALDDYL 195
Query: 146 SRFQTLVSGLQILKKSYVVSDHVSKILRSL-----PSRWRPKVTAIEEAKDLNTLSVEDL 200
SRF ++S L+ + SY + +I R S W KVT+++E+ +++TL+++ L
Sbjct: 196 SRFNKILSDLRFVDSSYDANYPQFEISRHFLNGLDMSIWEMKVTSVQESVNMSTLTLDSL 255
Query: 201 VSSLKVHEMSLNEHETSKKSKSI-----ALPSKGKTSKSSKAYKASESEEESPDGDSDED 255
+ LK HEM++ KS ++ +L +SKSS + + ++ + +ED
Sbjct: 256 YTKLKTHEMNILSRRVDSKSSALVSSSSSLDVDASSSKSSILALFNATSDDQLEQFKEED 315
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,943,502
Number of Sequences: 2790947
Number of extensions: 17328365
Number of successful extensions: 80141
Number of sequences better than 10.0: 491
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 79301
Number of HSP's gapped (non-prelim): 822
length of query: 264
length of database: 848,049,833
effective HSP length: 125
effective length of query: 139
effective length of database: 499,181,458
effective search space: 69386222662
effective search space used: 69386222662
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 73 (32.7 bits)
Medicago: description of AC127021.10