BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127020.7 + phase: 0 /pseudo
(1459 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9C7N6 Reverse transcriptase, putative; 100033-105622 ... 81 3e-13
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa] 81 3e-13
UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa] 81 3e-13
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 80 4e-13
UniRef100_Q9LJ41 Ta11 non-LTR retroelement protein-like [Arabido... 80 4e-13
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 78 2e-12
UniRef100_Q9ZQG0 Putative Ta11-like non-LTR retroelement protein... 77 4e-12
UniRef100_Q84RE2 Hypothetical protein At2g17920/T13L16.6 [Arabid... 77 5e-12
UniRef100_Q7XJS1 Putative Ta11-like non-LTR retroelement protein... 77 5e-12
UniRef100_Q6DR65 Hypothetical protein [Arabidopsis thaliana] 77 5e-12
UniRef100_O65222 F7N22.17 protein [Arabidopsis thaliana] 75 1e-11
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 75 1e-11
UniRef100_Q9LH15 Ta11 non-LTR retroelement protein-like [Arabido... 74 3e-11
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa] 74 4e-11
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa] 74 4e-11
UniRef100_O22221 Putative Ta11-like non-LTR retroelement protein... 73 6e-11
UniRef100_Q9FG64 Similarity to Ta11-like non-LTR retroelement pr... 72 1e-10
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 72 1e-10
UniRef100_Q8RY33 At2g41590/T32G6.11 [Arabidopsis thaliana] 72 1e-10
UniRef100_Q8RUT2 Putative retroelement pol polyprotein [Arabidop... 72 1e-10
>UniRef100_Q9C7N6 Reverse transcriptase, putative; 100033-105622 [Arabidopsis
thaliana]
Length = 1557
Score = 80.9 bits (198), Expect = 3e-13
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPW 98
CLIG VL + M R W+ +V +R+ F F K D VL +G
Sbjct: 38 CLIGRVLNPSCQPMKHLIRNMPRKWQKEGKVKGVALSDERFQFIFDSKHDLEDVLAKGVH 97
Query: 99 LYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV 158
++ + I++DR + L + WVQ+ +P + K +G +G +K
Sbjct: 98 SFNEWSIIVDRWYEHPPDDY--LRFMPLWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVF 155
Query: 159 RNTIHSS--YMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
+H + ++R+KV DV+ PL++ + +G TV F YE++ C+ C L H
Sbjct: 156 NPDLHQAQKFVRVKVLFDVSRPLRRSKVINFKHGESATVKFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DMCPLLIKARQD 227
>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
Length = 1711
Score = 80.9 bits (198), Expect = 3e-13
Identities = 51/183 (27%), Positives = 88/183 (47%), Gaps = 6/183 (3%)
Query: 51 QFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRI 110
Q A F E M RAW+ ++ + ++ F + D VL+ GPWL+ +++
Sbjct: 182 QVALF-EDMRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADF 240
Query: 111 APSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR--NTIHSSYMR 168
P++VPL + WV+++ LP + + G GS LG ++ DV+ + R
Sbjct: 241 NGLVSPSMVPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFR 300
Query: 169 IKVAIDVTVPLKKEWRVRASNGNFVTV---NFKYEKLGVFCHRCGVLGHTDKVCPELFEL 225
I+V + V PLK+ ++ + N +YE++ FC CG +GH+DK C +
Sbjct: 301 IRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKRLAN 360
Query: 226 DSD 228
+ D
Sbjct: 361 EED 363
>UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa]
Length = 1285
Score = 80.9 bits (198), Expect = 3e-13
Identities = 51/183 (27%), Positives = 88/183 (47%), Gaps = 6/183 (3%)
Query: 51 QFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRI 110
Q A F E M RAW+ ++ + ++ F + D VL+ GPWL+ +++
Sbjct: 182 QVALF-EDMRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADF 240
Query: 111 APSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR--NTIHSSYMR 168
P++VPL + WV+++ LP + + G GS LG ++ DV+ + R
Sbjct: 241 NGLVSPSMVPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFR 300
Query: 169 IKVAIDVTVPLKKEWRVRASNGNFVTV---NFKYEKLGVFCHRCGVLGHTDKVCPELFEL 225
I+V + V PLK+ ++ + N +YE++ FC CG +GH+DK C +
Sbjct: 301 IRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKRLAN 360
Query: 226 DSD 228
+ D
Sbjct: 361 EED 363
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 80.5 bits (197), Expect = 4e-13
Identities = 57/220 (25%), Positives = 108/220 (48%), Gaps = 9/220 (4%)
Query: 15 LTLSDEGLTLNLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKS 74
L + DE + L E + A L+ + R+ +M R W G +
Sbjct: 14 LGIDDEPVALTSEFCSQAAYVNRFSLVVTTVNPRKQNLRALIGQMPRVW--GFPDSCVGR 71
Query: 75 VADRYLFQFHHKVDDAR--VLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHG 132
+ D+ QF + ++A VL GPW ++++ + + R P+ + + I FWVQ+ G
Sbjct: 72 IIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNL--SEAEMKIIPFWVQITG 129
Query: 133 LPFGFVQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGN 191
+P F+ + + +G+ LG + D N+ H+ ++R+++ ++ PL+ + + ++G
Sbjct: 130 IPLLFLTNAMARCVGNRLGHVADVDFDENSNHTGFVRVRINWNLDDPLRFQRNFQFADGE 189
Query: 192 FVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFELDSDDGV 231
+ F++E+L FC +CG L H KVC F D++D V
Sbjct: 190 NTVIKFRFERLRNFCTKCGSLKHDIKVCTLSF--DNEDPV 227
>UniRef100_Q9LJ41 Ta11 non-LTR retroelement protein-like [Arabidopsis thaliana]
Length = 487
Score = 80.5 bits (197), Expect = 4e-13
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 6/192 (3%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL + + R W+ RVT ++R+ F F K D VL +G
Sbjct: 39 LIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLEDVLAKGVHT 98
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAY--- 156
Y+++ IV+DR + + L + WVQ+ +P + K +G +G +K
Sbjct: 99 YNDWSIVVDRWYENPPDDY--LRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFN 156
Query: 157 DVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTD 216
V +H ++R+ V DV+ PL++ + NG+ TV F YE++ C+ C L H
Sbjct: 157 PVEPQLHE-FVRVNVLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEK 215
Query: 217 KVCPELFELDSD 228
+CP L + D
Sbjct: 216 DLCPILIKERQD 227
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 78.2 bits (191), Expect = 2e-12
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 39 CLIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEG 96
CL+G L R + R W G + + FQF +++ VL G
Sbjct: 38 CLLGRPLMPRNQNLRQILTTVPRTW--GLVGFVRGRIIQNRRFQFIFPSEESLDTVLRRG 95
Query: 97 PWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKA- 155
PW + + +V++R P P + LN I FW+QV +P F+ +V I LG KA
Sbjct: 96 PWSFADRMLVVERWTPDMDP--LVLNFIPFWIQVREIPLQFLNLEVIDNIAGSLGERKAV 153
Query: 156 -YDVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGH 214
+D T ++RI++ DV PL+ + + S G ++F YE+L FC CG + H
Sbjct: 154 DFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNTVLSFYYERLRGFCDVCGRMTH 213
Query: 215 TDKVC----PELFELDSDD 229
C L + D DD
Sbjct: 214 DAGSCVLQNGALHDSDGDD 232
>UniRef100_Q9ZQG0 Putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 483
Score = 77.0 bits (188), Expect = 4e-12
Identities = 54/191 (28%), Positives = 86/191 (44%), Gaps = 4/191 (2%)
Query: 40 LIGGVLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWL 99
LIG VL M R W+ +V +R+ F F + D VL +G
Sbjct: 35 LIGRVLNPACQPMKNLLRNMPRKWQKEGKVKGIALNNERFQFIFDSEHDLEEVLAKGVHT 94
Query: 100 YDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR 159
++++ IV+DR + + L ++ WVQ+ +P + K +G +G +K
Sbjct: 95 FNDWSIVVDRWYENPPDDY--LRYMLLWVQIWNIPVNYNTAKAITKLGDLIGEVKEVVFN 152
Query: 160 NTIHS--SYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDK 217
+ ++R+KV DV+ PL++ V NG TVNF YE++ C+ C L H
Sbjct: 153 PELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGGSATVNFHYERIQKRCYECQRLTHEKD 212
Query: 218 VCPELFELDSD 228
VCP L + D
Sbjct: 213 VCPILVKARQD 223
>UniRef100_Q84RE2 Hypothetical protein At2g17920/T13L16.6 [Arabidopsis thaliana]
Length = 307
Score = 76.6 bits (187), Expect = 5e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>UniRef100_Q7XJS1 Putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 336
Score = 76.6 bits (187), Expect = 5e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>UniRef100_Q6DR65 Hypothetical protein [Arabidopsis thaliana]
Length = 307
Score = 76.6 bits (187), Expect = 5e-12
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 59 MSRAWKPGKRVTITKSVADRYL-FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPN 117
+ RAW V + + D Y+ F F ++D V PWL++N+ + R P+ N
Sbjct: 58 LPRAWGLTAHVH-GRIIDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALN 116
Query: 118 LVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDV 175
V I+ WVQ+ G+PF +V + I +G + + D +T + +Y+R++V + +
Sbjct: 117 FVTT--IDLWVQMRGIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGI 174
Query: 176 TVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCP 220
T L+ R+ +G + F+YE+L C C H CP
Sbjct: 175 TDSLRFFQRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCP 219
>UniRef100_O65222 F7N22.17 protein [Arabidopsis thaliana]
Length = 416
Score = 75.5 bits (184), Expect = 1e-11
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 58 RMSRAWKPGKRVTITKSVADRYLFQFHHKVDDAR--VLEEGPWLYDNFHIVLDRIAPSAV 115
+MSR W G + + +R QF + ++A VL GPW ++++ + + R P+
Sbjct: 78 QMSRVW--GFPDSCVGRILERGRVQFKFQTEEAMNLVLRRGPWSFNDWMLSIHRWYPNI- 134
Query: 116 PNLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDV-RNTIHSSYMRIKVAID 174
+ L I FWVQ+ G+P F+ + + +G+ LG + D N+ H ++R+K+ +
Sbjct: 135 -SETELKIIPFWVQITGIPLLFLTNAMARCVGNRLGIVSTVDFDENSNHVGFVRVKIDWN 193
Query: 175 VTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVCPELFE 224
+ PL+ + + + + +++E+L FC +CG L H K C F+
Sbjct: 194 LDDPLRFQRNFQFAVDENTVIKYRFERLRNFCSKCGSLKHDVKECVLAFD 243
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 75.1 bits (183), Expect = 1e-11
Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 62 AWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPL 121
+++ ++V+ + +LF FH R LE+GPW+++ +V+ + + + +
Sbjct: 28 SFRVNRKVSCKDLGENHFLFTFHQASGKRRALEDGPWMFNKDLVVMIDLDETKLIEDMIF 87
Query: 122 NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRN--TIHSSYMRIKVAIDVTVPL 179
+ WV+ LP G + + G IG +G D+ + ++RIK+ ID+ PL
Sbjct: 88 AFVPIWVRAMKLPLGLMTKETGMAIGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPL 147
Query: 180 KKEWRVRA-SNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
+ + ++ + YE L FC+ CG++GHT+K+C
Sbjct: 148 MRGVTLFVGADERPLWCPLVYEFLPDFCYICGIVGHTEKLC 188
>UniRef100_Q9LH15 Ta11 non-LTR retroelement protein-like [Arabidopsis thaliana]
Length = 241
Score = 73.9 bits (180), Expect = 3e-11
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 12/166 (7%)
Query: 59 MSRAWKPGKRVTITKSVADRYLFQFHHKVDDA--RVLEEGPWLYDNFHIVLDRIAPSAVP 116
M R W G+ + + + F F ++++ VL GPW ++++ I+L R P
Sbjct: 58 MPRIW--GQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQ--- 112
Query: 117 NLVPL-NHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTL--KAYDVRNTIHSSYMRIKVAI 173
+PL I FWVQ+ G+PF F+ V + IG LG + ++V + R+ +
Sbjct: 113 --IPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHW 170
Query: 174 DVTVPLKKEWRVRASNGNFVTVNFKYEKLGVFCHRCGVLGHTDKVC 219
D+T PL+ + + + G + F+YE+L FC CG+L H C
Sbjct: 171 DITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGAC 216
>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
Length = 1694
Score = 73.6 bits (179), Expect = 4e-11
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 7 PTKLNLDGLTLSDEGLTL-NLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKP 65
PT L DE + + N+E + A L L Q A F + M RAW+
Sbjct: 240 PTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDD-MRRAWRL 298
Query: 66 GKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIE 125
++ + ++ F + D V++ GPW++ +++ P+ VPL+ +
Sbjct: 299 RADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVP 358
Query: 126 FWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEW 183
WV+++ LP + G+ GS LG ++ DV + + + I+V + V PLK +
Sbjct: 359 IWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLPVKRPLKSQI 418
Query: 184 RVRAS-NGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVC 219
+R + G V F YE++ FC CG +GH+D+ C
Sbjct: 419 AIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 457
>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
Length = 1888
Score = 73.6 bits (179), Expect = 4e-11
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 7/219 (3%)
Query: 7 PTKLNLDGLTLSDEGLTL-NLEAEPETAADLDHCLIGGVLADREIQFAYFSERMSRAWKP 65
PT L DE + + N+E + A L L Q A F + M RAW+
Sbjct: 214 PTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDD-MRRAWRL 272
Query: 66 GKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIE 125
++ + ++ F + D V++ GPW++ +++ P+ VPL+ +
Sbjct: 273 RADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVP 332
Query: 126 FWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVRNTIHS--SYMRIKVAIDVTVPLKKEW 183
WV+++ LP + G+ GS LG ++ DV + + + I+V + V PLK +
Sbjct: 333 IWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLPVKRPLKSQI 392
Query: 184 RVRAS-NGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVC 219
+R + G V F YE++ FC CG +GH+D+ C
Sbjct: 393 AIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 431
>UniRef100_O22221 Putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 367
Score = 73.2 bits (178), Expect = 6e-11
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V + PWL++N+ + R + N V I+ WVQ+ G+P +V
Sbjct: 80 FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEVAPAHNFVTT--IDLWVQIRGIPLPYVSE 137
Query: 141 KVGQGIGSFLGTLKAYDVRNT--IHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + D +T I +Y+R++V +T L+ R+ +G T+ F+
Sbjct: 138 ETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 197
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 198 YERLRRICSSCFRFTHNRAYCP 219
>UniRef100_Q9FG64 Similarity to Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana]
Length = 361
Score = 72.4 bits (176), Expect = 1e-10
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 82 QFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQPK 141
+F ++D L PW+++ + I L R + L I+ WV + G+P +V +
Sbjct: 81 RFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDF--LTFIDVWVHIRGIPLPYVSER 138
Query: 142 VGQGIGSFLGTLKAYDVRN--TIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFKY 199
+ I S LG + A D T +++R+KV +D T PL+ RVR ++ + F+Y
Sbjct: 139 TVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEY 198
Query: 200 EKLGVFCHRCGVLGHTDKVCPELF---ELDSDDGV 231
EKL C C + H CP + E+D++ V
Sbjct: 199 EKLQRVCTNCCRVNHQVSHCPYVVHQEEMDNEPDV 233
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 72.4 bits (176), Expect = 1e-10
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 57 ERMSRAWKPGKRVTITKSVADRYLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVP 116
E M RAW+ ++ + ++ F+ + D VL+ PWL+ +++ P
Sbjct: 375 EDMRRAWRLRAEMSYKSLKDNLFIVSFNAEGDYNFVLQGDPWLHRGDALLVAEFNGLLNP 434
Query: 117 NLVPLNHIEFWVQVHGLPFGFVQPKVGQGIGSFLGTLKAYDVR--NTIHSSYMRIKVAID 174
++V L+ + WV+++ LP + G+ GS +G ++ DV+ + RI+V +
Sbjct: 435 SMVNLDTVPIWVRIYDLPLVMMNRARGELYGSKMGKVREVDVQEDGCNKHDFFRIRVDLP 494
Query: 175 VTVPLKKEWRVRAS-NGNFVTVNF--KYEKLGVFCHRCGVLGHTDKVCPELFELDSDDGV 231
V PL++ ++ G T F +YE++ FC CG +GH+DK C + +++ V
Sbjct: 495 VNRPLRRMLAIKIKVQGKEETRRFHLRYERVPHFCFFCGFIGHSDKECEKRLTNENEPLV 554
Query: 232 ----RNWGPYLKPVTQRVG 246
P LKP ++VG
Sbjct: 555 FSAELRCSP-LKPFERKVG 572
>UniRef100_Q8RY33 At2g41590/T32G6.11 [Arabidopsis thaliana]
Length = 367
Score = 72.4 bits (176), Expect = 1e-10
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 81 FQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFVQP 140
F F +++D V + PWL++N+ + R + N V ++ WVQ+ G+P +V
Sbjct: 80 FLFQNEIDLMMVQRKEPWLFNNWFVAATRWEVAPAHNFVTT--VDLWVQIRGIPLPYVSE 137
Query: 141 KVGQGIGSFLGTLKAYDVRNT--IHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+ I LG + D +T I +Y+R++V +T L+ R+ +G T+ F+
Sbjct: 138 ETVMEIARDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIVFDSGETATIRFQ 197
Query: 199 YEKLGVFCHRCGVLGHTDKVCP 220
YE+L C C H CP
Sbjct: 198 YERLRRICSSCFRFTHNRAYCP 219
>UniRef100_Q8RUT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 267
Score = 72.0 bits (175), Expect = 1e-10
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 79 YLFQFHHKVDDARVLEEGPWLYDNFHIVLDRIAPSAVPNLVPLNHIEFWVQVHGLPFGFV 138
+ +F + D +V++ P+ +D + ++L + P P+ L I FW+++ GLP F
Sbjct: 74 FQLKFDFREDLQQVVDNRPYHFDQWMVILQKWEPIISPSFPSL--ISFWIELQGLPKHFW 131
Query: 139 QPKVGQGIGSFLGTLKAYDVRNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGNFVTVNFK 198
+PK+ Q I LG + ++ SS ++IKV +D PL KE V NG V
Sbjct: 132 KPKMLQAIREELGEVMTKEIT----SSSVKIKVLLDGLQPLIKETIVDFPNGGEAVVYLD 187
Query: 199 YEKLGVFCHRCGVLGHTDKVCPEL 222
Y+ L C C L H K CP +
Sbjct: 188 YKNLKNHCLHCQRLSHEKKNCPRV 211
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.351 0.158 0.526
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,035,638,284
Number of Sequences: 2790947
Number of extensions: 77755610
Number of successful extensions: 306267
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 306081
Number of HSP's gapped (non-prelim): 116
length of query: 1459
length of database: 848,049,833
effective HSP length: 140
effective length of query: 1319
effective length of database: 457,317,253
effective search space: 603201456707
effective search space used: 603201456707
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC127020.7