BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126786.10 - phase: 0 /pseudo
         (1308 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop...   144  2e-32
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...   144  2e-32
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...   142  9e-32
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]        140  3e-31
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]              138  1e-30
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]                  137  2e-30
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...   136  4e-30
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...   136  4e-30
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]                  136  5e-30
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                  135  1e-29
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]      134  1e-29
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]             131  1e-28
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa...   129  5e-28
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]                  129  8e-28
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                  125  7e-27
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza...   125  9e-27
UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]              124  2e-26
UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabid...   119  8e-25
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or...   118  1e-24
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                            113  3e-23

>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  144 bits (363), Expect = 2e-32
 Identities = 95/246 (38%), Positives = 143/246 (57%), Gaps = 19/246 (7%)

Query: 7   DIEKFTGGNDFGLWKVKMRAI---------LIQQKCVEALKGEAQMAAHLTPAEKTELND 57
           ++EK  G  D+ LWK K+ A          L + + +E  +  A+  + LT  E   L +
Sbjct: 7   EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66

Query: 58  K---AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVE 114
           K   A S +I+ LG+ VLR+V +E TA  M   LD L+M KSL +R  LKQ+LY Y+M +
Sbjct: 67  KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126

Query: 115 SKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLE 174
           S  I E + +F K+I +L N+ V++ DED+A+ LL +LP+ F+  KDT+ YGK  T+ L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185

Query: 175 EVQAALRTKELTKFKELK-VDDSGEGLNV-SRGRSQNRGKGKGKNSRSKSRSKGDGNKTQ 232
           E+  A+R+K L      K + +S + L V  RGRS+ R K   +N +S+SRSK    K  
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERN-KSQSRSKSREKKV- 243

Query: 233 YKCFIC 238
             C++C
Sbjct: 244 --CWVC 247


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  144 bits (363), Expect = 2e-32
 Identities = 97/254 (38%), Positives = 143/254 (56%), Gaps = 28/254 (11%)

Query: 7   DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKT------------- 53
           ++EKF G  D+ LWK K+ A +     +E L  E +     +  E +             
Sbjct: 7   EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66

Query: 54  -------ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQ 106
                  E   KA S II+ LG+ VLR+V ++ TA  M   LD L+M KSL +R  LKQ+
Sbjct: 67  LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126

Query: 107 LYFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYG 166
           LY Y+M E+  + E + +F K+I +L N+ V + DED+A+ LL +LPR F+  K+T+ Y 
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186

Query: 167 KEGTITLEEVQAALRTKELTKFKELK-VDDSGEGLNV-SRGRSQNRGKGKGKNSRSKSRS 224
           K  T+ LEE+ +A+R+K L      K + ++ +GL V  RGRS+ RGKG  KN +S+S+S
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKN-KSRSKS 244

Query: 225 KGDGNKTQYKCFIC 238
           KG G      C+IC
Sbjct: 245 KGAGK----TCWIC 254


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
           (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score =  142 bits (357), Expect = 9e-32
 Identities = 84/238 (35%), Positives = 133/238 (55%), Gaps = 5/238 (2%)

Query: 3   GSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSA 62
           G K ++ KF G N F  W+ +MR +LIQQ   + L  +++    +   +  +L+++A SA
Sbjct: 3   GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62

Query: 63  IIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQL 122
           I + L D V+  +  E TA  +W +L+SLYM+K+L ++  LK+QLY   M E    +  L
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 123 TEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRT 182
             FN +I  LAN+ V +E+EDKA+ LL +LP S++N   T+L+GK  TI L++V +AL  
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTSALLL 181

Query: 183 KELTKFKELKVDDSGEGL-NVSRGRSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFICH 239
            E  +    K ++ G+ L    RGRS  R       S ++ +SK         C+ C+
Sbjct: 182 NEKMR---KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCN 236


>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  140 bits (352), Expect = 3e-31
 Identities = 87/244 (35%), Positives = 143/244 (57%), Gaps = 24/244 (9%)

Query: 3   GSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDK---- 58
           G++ ++EKF G  D+ +WK K+ A +        L+           +EK++ ++K    
Sbjct: 3   GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62

Query: 59  -----------AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQL 107
                      A S I++ + D+VLR++ +ET+A +M   LD LYM+K+L +R  LKQ+L
Sbjct: 63  KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122

Query: 108 YFYRMVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK 167
           Y ++M E+  I   + EF  I+ +L N++V + DED+A+ LL +LP+ F+  KDT+ Y  
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182

Query: 168 EGTI-TLEEVQAALRTKELTKFKELK--VDDSGEGLNV-----SRGRSQNRGKGKGKNSR 219
             T+ +L+EV AA+ ++EL +F  +K  +    EGL V     +RGRS+ + KGKGK S+
Sbjct: 183 GKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSK 241

Query: 220 SKSR 223
           SKS+
Sbjct: 242 SKSK 245


>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
          Length = 1181

 Score =  138 bits (348), Expect = 1e-30
 Identities = 80/213 (37%), Positives = 129/213 (60%), Gaps = 7/213 (3%)

Query: 17  FGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVS 76
           F LW+VKMRA+L QQ+  +AL G  +     +  EK   + KA+S I + L + +L+EV 
Sbjct: 17  FSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKR-DRKAMSYIHLHLSNNILQEVL 75

Query: 77  RETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANID 136
           +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ F +I+ +L +++
Sbjct: 76  KEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESME 135

Query: 137 VNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDS 196
           V  +++D AL LLC+LP S+ NF+DT+LY ++ T+TL+EV  AL  KE     ++K    
Sbjct: 136 VKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHAKE-----KMKKMVP 189

Query: 197 GEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGN 229
            EG N        RG  + KN+ +KSR K   +
Sbjct: 190 SEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSS 222


>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
          Length = 1211

 Score =  137 bits (346), Expect = 2e-30
 Identities = 81/213 (38%), Positives = 126/213 (59%), Gaps = 7/213 (3%)

Query: 17  FGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVS 76
           F LW+VKMRA+L QQ   +AL G  +     +  EK   + K +S I + L + +L+EV 
Sbjct: 17  FSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKR-DRKTMSYIHLHLSNNILQEVL 75

Query: 77  RETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANID 136
           +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ F KI+ +L +++
Sbjct: 76  KEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESME 135

Query: 137 VNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDS 196
           V  ++ED  L LLC+LP S+ NF+DT+LY  + T+TL+EV  AL  KE     ++K    
Sbjct: 136 VKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVYDALHAKE-----KIKKMVP 189

Query: 197 GEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGN 229
            EG N        RG+ + KN+ SKSR K   +
Sbjct: 190 SEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSS 222


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  136 bits (343), Expect = 4e-30
 Identities = 94/255 (36%), Positives = 141/255 (54%), Gaps = 30/255 (11%)

Query: 7   DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDK-------- 58
           ++EKF G  D+ +WK K+ A L       ALK E  +   +   + TE  +K        
Sbjct: 7   EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66

Query: 59  -------AVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
                  A SAI++ + D+VLR++ +E +A +M   LD LYM+K+L +R   KQ+LY ++
Sbjct: 67  LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126

Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYG-KEGT 170
           M E+  I   + EF +II +L N +V + DED+A+ LL +LP+ F+  +DT+ YG    T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186

Query: 171 ITLEEVQAALRTKELTKFKELK-VDDSGEGLNV-----SRGRSQNRG-KGKGKNSRSKSR 223
           ++L+EV AA+ +KEL      K +    EGL V     +RGR++ RG     K SRSKSR
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSR 246

Query: 224 SKGDGNKTQYKCFIC 238
           SK         C+IC
Sbjct: 247 SKKG-------CWIC 254


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  136 bits (343), Expect = 4e-30
 Identities = 84/239 (35%), Positives = 141/239 (58%), Gaps = 22/239 (9%)

Query: 7   DIEKFTGGNDFGLWKVKMRA---ILIQQKCVEALKGEAQMAAHLTPAEKT---------- 53
           ++EKF G  D+ +WK K+ A   IL     ++  +   +  + L  +++           
Sbjct: 7   EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66

Query: 54  --ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
             E   KA SAI++ + D+VLR++ +E+TA +M   LD LYM+K+L +R   KQ+LY ++
Sbjct: 67  LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126

Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGT 170
           M E+  +   + EF +II +L N++V + DED+A+ LL ALP++F+  KDT+ Y   +  
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186

Query: 171 ITLEEVQAALRTKEL---TKFKELKVDDSG---EGLNVSRGRSQNRGKGKGKNSRSKSR 223
           +TL+EV AA+ +KEL   +  K +KV   G   +  N ++G+ + +GKGKGK  +SK +
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKK 245


>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
          Length = 1280

 Score =  136 bits (342), Expect = 5e-30
 Identities = 86/227 (37%), Positives = 136/227 (59%), Gaps = 15/227 (6%)

Query: 17  FGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVS 76
           F LW+VKMRA+L QQ   +AL G  +     +  EK + + KA+S I + L + +L+EV 
Sbjct: 52  FSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAMSYIHLHLSNNILQEVL 110

Query: 77  RETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANID 136
           +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ F +I+ +L +I+
Sbjct: 111 KEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIE 170

Query: 137 VNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDD- 195
           V  ++ED  L LLC+LP S+ NF+DT+LY  + T+ L+EV  AL  KE  K K++   + 
Sbjct: 171 VKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVYDALHAKE--KMKKMVPSEG 227

Query: 196 ---SGEGLNVSRGRSQ-----NRGKGKGKNS-RSKSRSKGDGNKTQY 233
                EGL V RGR Q     N+ + K  +S R +S+S+G     +Y
Sbjct: 228 SNSQAEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKY 273


>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score =  135 bits (339), Expect = 1e-29
 Identities = 76/213 (35%), Positives = 129/213 (59%), Gaps = 7/213 (3%)

Query: 17  FGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVS 76
           F LW+VKMRA+L QQ   +AL G  +     +  EK   + KA+S I + L + +L+EV 
Sbjct: 17  FSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKR-DRKAISYIHLHLSNNILQEVL 75

Query: 77  RETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANID 136
           +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ + + +M+ L+ F +I+ +L +++
Sbjct: 76  KEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAFKEIVADLESME 135

Query: 137 VNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDS 196
           V  +++D  L LLC+LP S+ NF+ T+LY ++ T+TL+EV  A   KE     ++K   +
Sbjct: 136 VKYDEDDLGLILLCSLPSSYANFRGTILYSRD-TLTLKEVYDAFHAKE-----KMKKMVT 189

Query: 197 GEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGN 229
            EG N        RG+ + KN++++SR K   +
Sbjct: 190 SEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSS 222


>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
          Length = 1230

 Score =  134 bits (338), Expect = 1e-29
 Identities = 91/250 (36%), Positives = 135/250 (53%), Gaps = 23/250 (9%)

Query: 7   DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEK-------------T 53
           ++EKF G  D+ LWK K+ A +       AL+    ++  L   E+              
Sbjct: 7   EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66

Query: 54  ELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMV 113
           E   KA S I++ + D+VLR+  +E TA SM   LD LYM+K+L +R  LKQ+LY Y+M 
Sbjct: 67  EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126

Query: 114 ESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGK-EGTIT 172
           E+  +   + EF ++I +L N +V + DED+A+ LL +LP+ F+  KDT+ YG    T++
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186

Query: 173 LEEVQAALRTKELTKFKELK-VDDSGEGLNVS---RGRSQNRGKGKGKNSRSKSRSKGDG 228
           ++EV AA+ +KEL      K +    EGL V      R  +  K KG   RS+SRSKG  
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSRSKG-- 244

Query: 229 NKTQYKCFIC 238
                 C+IC
Sbjct: 245 ---WKGCWIC 251


>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
          Length = 1328

 Score =  131 bits (330), Expect = 1e-28
 Identities = 80/237 (33%), Positives = 131/237 (54%), Gaps = 4/237 (1%)

Query: 3   GSK*DIEKFTGGND-FGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVS 61
           G K ++ KF G    F +W+ +M+ +LIQQ   +AL G+++    +   +  EL++KA S
Sbjct: 3   GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62

Query: 62  AIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQ 121
           AI + L D V+  +  E +A  +W KL++LYM+K+L ++  LK+QLY   M E    +  
Sbjct: 63  AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122

Query: 122 LTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALR 181
           L   N +I  LAN+ V +E+EDK + LL +LP S++    T+L+GK+ +I L++V +AL 
Sbjct: 123 LNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQLKDVTSALL 181

Query: 182 TKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFIC 238
             E  K ++   +     +  SRGRS  R       S ++ +SK         C+ C
Sbjct: 182 LNE--KMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNC 236


>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1326

 Score =  129 bits (325), Expect = 5e-28
 Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 12/222 (5%)

Query: 17  FGLWKVKMRAILIQQKCV-EALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREV 75
           F LW+VKMRAIL Q   + EAL+   +  +    AE+   + KA+  I + L + +L+EV
Sbjct: 17  FSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLIQLHLSNDILQEV 76

Query: 76  SRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANI 135
            +E TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++ F +I+ +L +I
Sbjct: 77  LQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSI 136

Query: 136 DVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDD 195
           +V  +DED  L LLC+LP S+ NF+DT+L  ++  +TL EV  AL+ +E  K K +   D
Sbjct: 137 EVQFDDEDLGLLLLCSLPSSYANFRDTILLSRD-ELTLAEVYEALQNRE--KMKGMVQSD 193

Query: 196 S----GEGLNVSRGRSQNRGKGKGKN---SRSKSRSKGDGNK 230
           +    GE L V RGRS+ R      +   S+S+ RSK  G K
Sbjct: 194 ASSSKGEALQV-RGRSEQRTYNDSSDRDKSQSRGRSKSRGKK 234


>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
          Length = 382

 Score =  129 bits (323), Expect = 8e-28
 Identities = 80/244 (32%), Positives = 139/244 (56%), Gaps = 16/244 (6%)

Query: 4   SK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAI 63
           SK ++ KF G  +F LW+++++ +L QQ   +AL  +  M   +   +  E+  +A + I
Sbjct: 7   SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKAL--QETMPEKIDADKWNEMKAQAAATI 64

Query: 64  IMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 123
            + L D V+ +V  E +   +W+KL SL+M+KSL  +  LKQQLY  ++ E   + + + 
Sbjct: 65  RLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVD 124

Query: 124 EFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTK 183
            FN+++ +L+ +DV L+DEDKA+ LLC+LP S+E+   T+ +GK+ T+  EE+ ++L  +
Sbjct: 125 VFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKTEEIISSLLAR 183

Query: 184 ELTKFKELKVDDSGEGLNVSRGRS-QNRGKGKGKNSRSKSRSKGDGNKTQYKCFICHNLV 242
           +L + K+       E    S+G+S   + K   +   SKS+ KG       +C+ CH   
Sbjct: 184 DLRRSKK------NEATKASQGKSLLVKDKHDHEAGVSKSKEKG------ARCYKCHEFG 231

Query: 243 TSRR 246
             RR
Sbjct: 232 HIRR 235


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score =  125 bits (315), Expect = 7e-27
 Identities = 78/220 (35%), Positives = 128/220 (57%), Gaps = 8/220 (3%)

Query: 17  FGLWKVKMRAILIQQKCV-EALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREV 75
           F LW+VKMRA+L Q   + EAL+   +       AE+   + KA+S I + L + +L+EV
Sbjct: 17  FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQEV 76

Query: 76  SRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANI 135
            ++ TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++ F +I+ +L ++
Sbjct: 77  LQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHISVFKEIVADLVSM 136

Query: 136 DVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTK--FKELKV 193
           +V  +DED  L LLC+LP S+ NF+ T+L  ++  +TL EV  AL+ +E  K   +    
Sbjct: 137 EVQFDDEDLGLLLLCSLPSSYANFRHTILLSRD-ELTLAEVYEALQNREKMKGMVQSYAS 195

Query: 194 DDSGEGLNVSRGRSQNRGKGKGKN---SRSKSRSKGDGNK 230
              GE L V RGRS+ R      +   S+S+ RSK  G K
Sbjct: 196 SSKGEALQV-RGRSEQRTYNDSNDHDKSQSRGRSKSRGKK 234


>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
          Length = 1229

 Score =  125 bits (314), Expect = 9e-27
 Identities = 79/215 (36%), Positives = 129/215 (59%), Gaps = 10/215 (4%)

Query: 17  FGLWKVKMRAILIQQKCV-EALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREV 75
           F LW+VKMRA+L Q   + EAL+   +       AE+   + KA+S I + L + +L++V
Sbjct: 14  FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKV 73

Query: 76  SRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANI 135
            +E TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++ F +II +L ++
Sbjct: 74  LQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIIADLVSM 133

Query: 136 DVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDD 195
           +V  +DED  L LLC+LP  + NF+DT+L  ++  +TL EV  AL+ +E  K K +   D
Sbjct: 134 EVQFDDEDLGLLLLCSLPSLYANFRDTILLSRD-ELTLAEVYEALQNRE--KMKGMVQSD 190

Query: 196 S----GEGLNVSRGRSQNRGKGKGKNSRSKSRSKG 226
           +    G+ L V RGRS+ R      N R KS+S+G
Sbjct: 191 ASSSKGKALQV-RGRSEQR-TYNDSNDRDKSQSRG 223


>UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]
          Length = 432

 Score =  124 bits (311), Expect = 2e-26
 Identities = 75/230 (32%), Positives = 127/230 (54%), Gaps = 11/230 (4%)

Query: 5   K*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAII 64
           K D+ KF G  +FGLW+ +++ +L QQ+  +ALKG           E+ +L  +A + I 
Sbjct: 43  KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVKPAKMEDDDCEEMQL--QAAATIR 100

Query: 65  MCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 124
            CL D+++  V  ET+   +W KL++ +M+K+L +++ LKQ+LY  +M E   +   +  
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNV 160

Query: 125 FNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGT------ITLEEVQA 178
           FN+++ +L  +DV ++DEDKA+ LLC+LP S+E+    M   KEG       + ++E  A
Sbjct: 161 FNQLVTDLVKMDVEVDDEDKAIVLLCSLPESYEH---VMRKNKEGETSQAEGLLVKEDHA 217

Query: 179 ALRTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDG 228
             + K+  K K +K     E  ++ R     +GK K   + S + S  DG
Sbjct: 218 GHKVKKNKKKKMVKCFRCDEWGHIRRECPTLKGKAKANVATSSNDSDSDG 267


>UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  119 bits (297), Expect = 8e-25
 Identities = 72/176 (40%), Positives = 110/176 (61%), Gaps = 13/176 (7%)

Query: 52  KTELNDKAVSAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
           + + ++KA+  I + +GDKVLR +    TA   W  LD LY+ KSL +R  L+ ++Y YR
Sbjct: 37  RIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYR 96

Query: 112 MVESKPIMEQLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI 171
           M +SK + E + EF K+I +L N+ + + DE +A+ +L ALP S++  K+T+ YG+EG I
Sbjct: 97  MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-I 155

Query: 172 TLEEVQAALRTKELTKFKELKVDDS------GEGLNVSRGRSQNRGKGKGKNSRSK 221
            L++V +A ++KEL    EL+ D S      GEGL V RG+SQ RG    K++  K
Sbjct: 156 KLDDVISAAKSKEL----ELR-DSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGK 205


>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
          Length = 556

 Score =  118 bits (295), Expect = 1e-24
 Identities = 77/230 (33%), Positives = 128/230 (55%), Gaps = 16/230 (6%)

Query: 18  GLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSAIIMCLGDKVLREVSR 77
           G  +++++ +L QQ   +AL  E  M   +   +  E+  +A + I + L D V+ +V  
Sbjct: 152 GSSQMRLKDLLAQQGISKAL--EETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMD 209

Query: 78  ETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDNLANIDV 137
           E T   +W+KL SLYM+KSL  +  LKQQLY  +M E   + + +  FN+++ +L+ +DV
Sbjct: 210 EKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDV 269

Query: 138 NLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDSG 197
            L+DEDKA+ LLC+LP SFE+   T+ +GK+ T+  EE+ ++L  ++L + K+       
Sbjct: 270 KLDDEDKAIILLCSLPPSFEHVVTTLTHGKD-TVKTEEIISSLLARDLRRSKK------N 322

Query: 198 EGLNVSRGRS-QNRGKGKGKNSRSKSRSKGDGNKTQYKCFICHNLVTSRR 246
           E +  S+  S   + K   +   SKS+ KG       +C+ CH     RR
Sbjct: 323 EAMEASQAESLLVKAKHDHEAGVSKSKEKG------ARCYKCHEFGHIRR 366


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  113 bits (283), Expect = 3e-23
 Identities = 80/242 (33%), Positives = 133/242 (54%), Gaps = 19/242 (7%)

Query: 2   MGSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEK-TELNDKAV 60
           M +K +IEKF G N F LWK+K++AIL +  C+ A+   ++     T  +K +E+N+ A+
Sbjct: 1   MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAI---SERPVDFTDDKKWSEMNEDAM 56

Query: 61  SAIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIME 120
           + + + + D VL  +  + TA  +W+ L+ LY  KSL ++  LK++LY  RM ES  + E
Sbjct: 57  ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116

Query: 121 QLTEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFE----NFKDTMLYGKEGTITLEEV 176
            L   N +   L ++   +E +++A  LL +LP S++    N  + +L      +  ++V
Sbjct: 117 HLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNIL---TDYLVFDDV 173

Query: 177 QAALRTKELTK--FKELKVD-DSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGNKTQY 233
            AA+  +E  +   ++ +V+    E L V RGRS  RG+  G+  RSKS  K   N T Y
Sbjct: 174 AAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGR-GRSKSSKK---NLTCY 229

Query: 234 KC 235
            C
Sbjct: 230 NC 231


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.360    0.161    0.601 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,862,340,229
Number of Sequences: 2790947
Number of extensions: 69064688
Number of successful extensions: 295524
Number of sequences better than 10.0: 325
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 294859
Number of HSP's gapped (non-prelim): 537
length of query: 1308
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1169
effective length of database: 460,108,200
effective search space: 537866485800
effective search space used: 537866485800
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 81 (35.8 bits)