BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126015.11 + phase: 0 
         (371 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9FT56 Hypothetical protein T25B15_30 [Arabidopsis tha...   480  e-134
UniRef100_Q8VYW0 AT3g52260/T25B15_30 [Arabidopsis thaliana]           387  e-106
UniRef100_Q7NP74 Gll0183 protein [Gloeobacter violaceus]              212  2e-53
UniRef100_Q9RTS2 Pseudouridine synthase, putative [Deinococcus r...   201  3e-50
UniRef100_P72970 Hypothetical pseudouridine synthase slr1592 [Sy...   194  3e-48
UniRef100_Q7V4B8 Pseudouridine synthase [Prochlorococcus marinus]     187  3e-46
UniRef100_Q7U3Y9 Probable pseudouridine synthase [Synechococcus ...   137  4e-31
UniRef100_UPI0000259C90 UPI0000259C90 UniRef100 entry                 137  6e-31
UniRef100_Q88W74 Pseudouridine synthase [Lactobacillus plantarum]     128  3e-28
UniRef100_P74346 Hypothetical pseudouridine synthase slr1629 [Sy...   126  8e-28
UniRef100_Q929D1 Lin2346 protein [Listeria innocua]                   125  2e-27
UniRef100_UPI00003CA5D4 UPI00003CA5D4 UniRef100 entry                 124  5e-27
UniRef100_Q9CGU4 Pseudouridine synthase [Lactococcus lactis]          124  5e-27
UniRef100_Q8Y532 Lmo2244 protein [Listeria monocytogenes]             124  5e-27
UniRef100_Q71XC2 Ribosomal large subunit pseudouridine synthase,...   124  5e-27
UniRef100_Q5QTU5 Pseudouridylate synthase [Idiomarina loihiensis...   124  5e-27
UniRef100_Q6MT30 Pseudouridine synthase [Mycoplasma mycoides]         122  1e-26
UniRef100_Q8Y657 Lmo1843 protein [Listeria monocytogenes]             122  2e-26
UniRef100_Q92AG5 Lin1957 protein [Listeria innocua]                   120  8e-26
UniRef100_Q8R9R1 Pseudouridylate synthase, 23S RNA-specific [The...   120  8e-26

>UniRef100_Q9FT56 Hypothetical protein T25B15_30 [Arabidopsis thaliana]
          Length = 376

 Score =  480 bits (1236), Expect = e-134
 Identities = 240/373 (64%), Positives = 300/373 (80%), Gaps = 17/373 (4%)

Query: 4   PKKIGIPWPEFNDGLSYDDVVRPSDAGLTLI-EFYSTKYKSSAPLQGWLQRIKSDQITLD 62
           P++IG+PWPE NDGL+Y D +  S++ LT + EFY TKYKSSAPL GW+QRI++ QI +D
Sbjct: 5   PQRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQID 64

Query: 63  ARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQ 122
             VV DPNT+LR GSKLVY R+PWKEPD P+++EVLYEDDD+IALNKPSGLQVLPGGLFQ
Sbjct: 65  GEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQ 124

Query: 123 QRTVLTQLQW-ETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADG 181
           QRTVLTQLQW    N S I + + PHPVPVHRLGRGTSGILLCAKTKLA+ +LA+YFA+G
Sbjct: 125 QRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEG 184

Query: 182 TSRIEGKGRHTNQELG---KIAKIYRALVSGIINNDQ-------VTINQPIGMVKYPGVA 231
           TS + G G + +QE G   K++KIYRAL  GI+  D+       V I QPIG+V+YPGVA
Sbjct: 185 TSLV-GSG-NLDQECGTGRKLSKIYRALADGIVEEDEARPFLLFVVIKQPIGVVRYPGVA 242

Query: 232 KGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLY 291
           +GLYVAS  GKPA S V VLER+ ++N +LV+V+IQSGRPHQIRIHL+++GHPL+GDPLY
Sbjct: 243 QGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLY 302

Query: 292 AVGGQPKCLDCDFLDE--SFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPI-TNEIIEM 348
             GGQPKC D D +D+  +FAEDGGY RP++ VPGDCGYHLHAH++ L + + T++++++
Sbjct: 303 VAGGQPKCFDPDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKI 362

Query: 349 IAPLPSILQTHEE 361
           +APLP ILQT  E
Sbjct: 363 VAPLPPILQTRCE 375


>UniRef100_Q8VYW0 AT3g52260/T25B15_30 [Arabidopsis thaliana]
          Length = 294

 Score =  387 bits (994), Expect = e-106
 Identities = 193/287 (67%), Positives = 236/287 (81%), Gaps = 7/287 (2%)

Query: 4   PKKIGIPWPEFNDGLSYDDVVRPSDAGLTLI-EFYSTKYKSSAPLQGWLQRIKSDQITLD 62
           P++IG+PWPE NDGL+Y D +  S++ LT + EFY TKYKSSAPL GW+QRI++ QI +D
Sbjct: 5   PQRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQID 64

Query: 63  ARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQ 122
             VV DPNT+LR GSKLVY R+PWKEPD P+++EVLYEDDD+IALNKPSGLQVLPGGLFQ
Sbjct: 65  GEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQ 124

Query: 123 QRTVLTQLQW-ETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADG 181
           QRTVLTQLQW    N S I + + PHPVPVHRLGRGTSGILLCAKTKLA+ +LA+YFA+G
Sbjct: 125 QRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEG 184

Query: 182 TSRIEGKGRHTNQELG---KIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVAS 238
           TS + G G + +QE G   K++KIYRAL  GI+  D+V I QPIG+V+YPGVA+GLYVAS
Sbjct: 185 TSLV-GSG-NLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVAS 242

Query: 239 QSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPL 285
              KPA S V VLER+ ++N +LV+V+IQSGRPHQIRIHL+++GHPL
Sbjct: 243 PEWKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPL 289


>UniRef100_Q7NP74 Gll0183 protein [Gloeobacter violaceus]
          Length = 314

 Score =  212 bits (539), Expect = 2e-53
 Identities = 134/339 (39%), Positives = 184/339 (53%), Gaps = 46/339 (13%)

Query: 15  NDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILR 74
           N G +Y D + P  AGLT++E+Y  +Y+ S   + W  RI++ Q+ LD R  T    +LR
Sbjct: 18  NQGWTYCDRIGPESAGLTVLEYYLLRYRHSGDHE-WQARIETGQVLLDHRS-TSSTELLR 75

Query: 75  VGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWET 134
               L Y R PW+EP  P  I ++Y D+ ++ + KP GL VLPGG F + T+L    W+ 
Sbjct: 76  SAQVLTYCRPPWQEPSVPLDIVIIYADEQVLVVAKPGGLPVLPGGGFLEHTLL----WQV 131

Query: 135 NNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQ 194
             +    A ++P PVP+HRLGRGTSG++L A+T  +RA L+                   
Sbjct: 132 RRRF---AGEEP-PVPIHRLGRGTSGLVLLARTHSSRAALSE----------------QM 171

Query: 195 ELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERN 254
              +I K+YRAL SG    D+ TI QPIG V +P +   L+ A+  G PA S   VL R 
Sbjct: 172 RRQRIGKLYRALASGTGMRDRFTIRQPIGKVPHP-LLGTLWAAAADGLPARSDCVVLRRQ 230

Query: 255 VKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGG 314
             +  +L+ V I +GRPHQIRIHL+  G+PL+GDPL+  GG  + LD D           
Sbjct: 231 CTD--SLLAVAISTGRPHQIRIHLAAAGYPLVGDPLFGPGGVAR-LDND----------- 276

Query: 315 YTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLP 353
                  VPGD GY LHAHRL   HP +   + +  P P
Sbjct: 277 -----ASVPGDGGYFLHAHRLSFLHPTSGRRLVLECPPP 310


>UniRef100_Q9RTS2 Pseudouridine synthase, putative [Deinococcus radiodurans]
          Length = 321

 Score =  201 bits (511), Expect = 3e-50
 Identities = 128/353 (36%), Positives = 187/353 (52%), Gaps = 54/353 (15%)

Query: 4   PKKIGIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDA 63
           P+  G P    N G +Y   ++    G  +++F + +++ S     W  R+ + ++T+D 
Sbjct: 16  PQMSGTPTSTLNSGYAYRTTLQRG--GQRVLDFLAQEFRHSDRAT-WAARLAAGEVTVDG 72

Query: 64  RVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQ 123
             V    T LR G  LV+ R PW EPDAP   +V+YED D++A++KPSGL  +PGG F +
Sbjct: 73  LTVRGDET-LRPGQMLVWQRPPWAEPDAPLHFDVIYEDADLLAVSKPSGLPTMPGGGFLE 131

Query: 124 RTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTS 183
            T+L Q++            + P   P+HRLGRGTSG++L + T  A A L         
Sbjct: 132 HTLLHQVR-----------GRWPDASPLHRLGRGTSGLVLFSLTSQAGAALLK------- 173

Query: 184 RIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKP 243
                    +   G++ K+YRAL +G+   D+  I  PIG V +P + + ++ AS +GK 
Sbjct: 174 ---------DWRAGRVQKVYRALSAGVAEQDEYDITVPIGPVAHPRLGQ-VFAASTAGKT 223

Query: 244 ALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCD 303
           A S   VLER  +E++TL +V+I +GRPHQIRIHL+ +G PL  DPLY  GG P      
Sbjct: 224 AHSRARVLER--REDTTLFEVEIFTGRPHQIRIHLASLGLPLAVDPLYVSGGLP------ 275

Query: 304 FLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSIL 356
                        RP   +PGD GY LHA  L   HP     + + AP P++L
Sbjct: 276 -------------RPD-ALPGDLGYALHASTLTFQHPAHGAALTLSAPAPTLL 314


>UniRef100_P72970 Hypothetical pseudouridine synthase slr1592 [Synechocystis sp.]
          Length = 291

 Score =  194 bits (494), Expect = 3e-48
 Identities = 125/328 (38%), Positives = 180/328 (54%), Gaps = 48/328 (14%)

Query: 33  LIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAP 92
           +++FYS +Y  S   Q W +RI+  QI +D + V DP   L+ G  L Y R PW EP+ P
Sbjct: 1   MLDFYSQRYLHSER-QAWQERIEQGQIEVDGKTV-DPTYPLQAGQTLTYWRSPWVEPEVP 58

Query: 93  HTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVH 152
             + VL+ D+D+ A++KPSGL VLPGG F   TVL QL+ +   +S           P+H
Sbjct: 59  LQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESLF---------PLH 109

Query: 153 RLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIIN 212
           RLG GTSG+LL  ++ L R  L+  F +   R                KIYR ++     
Sbjct: 110 RLGTGTSGLLLLGRSTLGRRELSRQFREHICR----------------KIYRTVIGPCDL 153

Query: 213 NDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPH 272
            ++   +Q IG + YP +   +Y AS  GKPA S   +L R+ ++  T ++V+I++GRPH
Sbjct: 154 PEKFECHQAIGKIPYPQLGY-IYAASSHGKPAQSYGRILARSPEK--TWLEVEIRTGRPH 210

Query: 273 QIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHA 332
           QIRIHL+ +G+PLLGD LY  GG P  ++C              R ++  P D GY LH+
Sbjct: 211 QIRIHLASLGYPLLGDRLYGPGGVP--INC--------------RTAR--PSDGGYTLHS 252

Query: 333 HRLFLSHPITNEIIEMIAPLPSILQTHE 360
           ++L   H  T + I++ APLP  L T E
Sbjct: 253 YQLGFLHLHTQQAIKLTAPLPPELITPE 280


>UniRef100_Q7V4B8 Pseudouridine synthase [Prochlorococcus marinus]
          Length = 338

 Score =  187 bits (476), Expect = 3e-46
 Identities = 133/365 (36%), Positives = 190/365 (51%), Gaps = 61/365 (16%)

Query: 14  FNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTIL 73
           FN G +Y   +   DAG  L+E  +  Y  S+    W QR+++ QI L+  +V   + +L
Sbjct: 17  FNHGWTYSQRIAAVDAGRGLVELLAVHYTHSSR-DVWQQRLQAGQIRLNGELVR-LDQLL 74

Query: 74  RVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTV--LTQLQ 131
             G ++ + R PW E   P + EV+++D D++ +NKPSGL V+PGG F   T+  L Q +
Sbjct: 75  ASGDQVCWQRPPWLEAAVPASWEVIFDDGDLLVVNKPSGLPVIPGGGFLDHTLTGLLQRR 134

Query: 132 WETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRH 191
            + + +S +       P PVHRLGR TSG+L+CA+ +  RA+L++ F   T+  +G    
Sbjct: 135 CQLDGESRL-------PRPVHRLGRFTSGLLICARQRETRAKLSAMFRRATAGDQG---- 183

Query: 192 TNQELGKIAKIYRALVSGIIN---NDQVTINQPIGMVKYPGVAKGLYVASQSGKP----- 243
                    KIYRAL    +N   ++  TI  PI    +P V K ++VA+ S +      
Sbjct: 184 -------CKKIYRALAHRNLNVHCDEVATIRVPIVQTAHPMVGK-VWVAADSSRQHDSKQ 235

Query: 244 -------ALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQ 296
                  ALS V +LER  ++++ L++V IQ+GRPHQIRIHL+ IG PL+GDPLY   GQ
Sbjct: 236 SESRVLTALSTVRLLER--RQDADLLEVAIQTGRPHQIRIHLAAIGSPLIGDPLYGFDGQ 293

Query: 297 PKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSIL 356
                                 S   PGD GY LHAHRL L  P  N +    A  P  L
Sbjct: 294 IS--------------------SAATPGDGGYCLHAHRL-LDVPYRNRLHGFTACSPRCL 332

Query: 357 QTHEE 361
           Q   E
Sbjct: 333 QMKTE 337


>UniRef100_Q7U3Y9 Probable pseudouridine synthase [Synechococcus sp.]
          Length = 315

 Score =  137 bits (346), Expect = 4e-31
 Identities = 110/323 (34%), Positives = 155/323 (47%), Gaps = 45/323 (13%)

Query: 14  FNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTIL 73
           FNDG +Y D V    AG  L  + + +Y+ SA  + W QRI S ++  + + +T     L
Sbjct: 6   FNDGWTYRDRVPVGAAGTWLSCWLAERYQHSAG-EVWRQRIHSGELDCNGQRLTADRR-L 63

Query: 74  RVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWE 133
             G  +++ R PW E   P   E +++D D++ +NKPSGL V+PGG F   T LT L   
Sbjct: 64  AGGEAVLWRRPPWLEEAIPDQWETIHDDGDLLVINKPSGLPVMPGGGFLLHT-LTALLEP 122

Query: 134 TNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTN 193
           T  +            PVHRLGR TSG+ +CA+  + RA L+  F     R EG  R   
Sbjct: 123 TGAR------------PVHRLGRFTSGLQVCARDPMTRAALSKQF-----RPEGSCRKVY 165

Query: 194 QELGKIAKIYRALVSGIINNDQVTINQP-IGMVKYPGVAKGLYVASQSGKPALSVVHVLE 252
           Q   +         +  + ND V    P +G V  P   K   +  +    A S + +LE
Sbjct: 166 QAWAQRVPGLEQGQTLTVTNDVVERQHPLLGWVWGPEPLKQEPIRKR--LTARSELELLE 223

Query: 253 RNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAED 312
           R  + +   +QV I +GRPHQIRIHL+ +G PLLGDPLY +  +                
Sbjct: 224 RTAEGDR--LQVTITTGRPHQIRIHLAQLGSPLLGDPLYLLNREIS-------------- 267

Query: 313 GGYTRPSKPVPGDCGYHLHAHRL 335
                 +   PGD GY LHA +L
Sbjct: 268 ------ATATPGDGGYRLHAWQL 284


>UniRef100_UPI0000259C90 UPI0000259C90 UniRef100 entry
          Length = 252

 Score =  137 bits (344), Expect = 6e-31
 Identities = 107/301 (35%), Positives = 155/301 (50%), Gaps = 64/301 (21%)

Query: 76  GSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETN 135
           G +LV+ R PW EP  P    V+++D D++ +NKPSGL V+PGG F   T+   L  E  
Sbjct: 3   GDELVWERPPWLEPAVPDQWSVIHDDGDLLVINKPSGLPVMPGGGFVAHTLTGLLADEAR 62

Query: 136 NKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQE 195
                         PVHRLGR TSG+LLCA+++ +RA L++        ++G        
Sbjct: 63  --------------PVHRLGRFTSGLLLCARSRSSRASLSAQLRIHHGAVDG-------- 100

Query: 196 LGKIAKIYRALVSGIINNDQVTINQPI----GMVKYPGVAKGLYVAS---QSGKPALSV- 247
              ++K YRAL +    N Q+   QP+     ++++P   K  +V     +   P+LS  
Sbjct: 101 ---LSKDYRALAA---TNPQLQPGQPLPVSAAVMRHPH-PKLCWVWGPPWEGPAPSLSAH 153

Query: 248 --VHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFL 305
             + +LER  +  + L+QV+I SGRPHQIRIHL+++  PLLGDPLY             L
Sbjct: 154 SSLTLLER--RPEADLLQVRIHSGRPHQIRIHLAWLNTPLLGDPLY-------------L 198

Query: 306 DESFAEDGGYTRPSKPVPGDCGYHLHAHRLF-LSHPITNEIIEMIAPLPSILQTHEEAIA 364
            E      G   P    PGD GY LHAH+L  + H  T   +   A  P++LQT   +I+
Sbjct: 199 GE------GRIHPD-ATPGDGGYLLHAHQLAGVRHQGTT--LGFTAEPPALLQTRTNSIS 249

Query: 365 Q 365
           +
Sbjct: 250 R 250


>UniRef100_Q88W74 Pseudouridine synthase [Lactobacillus plantarum]
          Length = 307

 Score =  128 bits (321), Expect = 3e-28
 Identities = 96/307 (31%), Positives = 148/307 (47%), Gaps = 52/307 (16%)

Query: 54  IKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTI--EVLYEDDDIIALNKPS 111
           IK+DQ+T++ ++      +      +V  +   +    P  I  +++YEDDD++ +NKP 
Sbjct: 39  IKTDQVTVNGQLEASKYHVKPGDEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQ 98

Query: 112 GLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLAR 171
           G+ V P       T++  L + +   STI    +P  V  HR+ + TSG+L+ AK   A 
Sbjct: 99  GMVVHPAPGHPNHTLVNALLYHSP-LSTINGEFRPGIV--HRIDKDTSGLLMVAKNDRAH 155

Query: 172 ARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVA 231
             LA+     T+  E                Y ALV G+I  D  TIN P+G  + P   
Sbjct: 156 QSLAAQLKAKTNLRE----------------YVALVHGVIKEDTGTINAPLG--RSPKDR 197

Query: 232 KGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLY 291
           K   +  ++G+PA++   VL+R   ++ TL+  ++++GR HQIR+HL  IGHPL+GDPLY
Sbjct: 198 KKQAIV-KTGRPAVTHFKVLKRY--QHYTLISCRLETGRTHQIRVHLQSIGHPLVGDPLY 254

Query: 292 AVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAP 351
                                     P K + G  G  LHA  L   HP+T +++   AP
Sbjct: 255 G-------------------------PKKTIKGH-GQFLHAKLLGFKHPVTGDLLTFEAP 288

Query: 352 LPSILQT 358
           LP I  T
Sbjct: 289 LPPIFTT 295


>UniRef100_P74346 Hypothetical pseudouridine synthase slr1629 [Synechocystis sp.]
          Length = 327

 Score =  126 bits (317), Expect = 8e-28
 Identities = 96/306 (31%), Positives = 149/306 (48%), Gaps = 51/306 (16%)

Query: 54  IKSDQITLDARVVTDPNTILRVGSKLVYH---RIPWKEPDAPHTIEVLYEDDDIIALNKP 110
           I+S Q+  +  V  D N IL+ G +LV +    IP         +++LYED+ +I +NKP
Sbjct: 54  IESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKP 113

Query: 111 SGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLA 170
           +GL V PG      TV+  L     + + I   Q+P  V  HRL + T+G ++ AKT+LA
Sbjct: 114 AGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIV--HRLDKDTTGAMVVAKTELA 171

Query: 171 RARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGV 230
              L     + T+R                ++Y  +V G     Q T+N P+G  ++PG 
Sbjct: 172 LHNLQVQLKEKTAR----------------RLYWGIVYGSPKEIQGTVNLPVG--RHPGD 213

Query: 231 AK--GLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGD 288
            +  G+    + G+ A++   +LER    N + ++ ++++GR HQIR+H   +GHPL+GD
Sbjct: 214 RQKMGIVPVEKGGREAVTHWRLLERI--GNHSWLEFQLETGRTHQIRVHSKQMGHPLVGD 271

Query: 289 PLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEM 348
            L                        YT P        G  LHAH+L L HP++ EII  
Sbjct: 272 NL------------------------YTSPGSVNVNLPGQALHAHQLSLIHPVSGEIITA 307

Query: 349 IAPLPS 354
           IAP+P+
Sbjct: 308 IAPMPA 313


>UniRef100_Q929D1 Lin2346 protein [Listeria innocua]
          Length = 289

 Score =  125 bits (314), Expect = 2e-27
 Identities = 99/327 (30%), Positives = 161/327 (48%), Gaps = 63/327 (19%)

Query: 30  GLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKL-----VYHRI 84
           GLTL      K+      +  ++   S  + L+ + + D NT L VG+ L     ++ +I
Sbjct: 14  GLTLTAILQEKFHLGKKARHEIRM--SQDVLLNNKPLDDWNTPLFVGASLSLPIILHDKI 71

Query: 85  PWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQ 144
           P  E D    +E++YEDD ++ +NKP G++      ++  T    +Q+           Q
Sbjct: 72  PVYEYD----LEIIYEDDFLLVVNKPVGMKTHANDSYETDTCANAVQYYLEKTG-----Q 122

Query: 145 KPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYR 204
           + + + VHRL + TSG++L AK KLA A L+        ++E +  H         + Y 
Sbjct: 123 EANALAVHRLDQTTSGLVLFAKNKLAIAGLSW-------QMENRAIH---------RTYL 166

Query: 205 ALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQV 264
           A V G       TIN+PIG  ++ G  + +   S  G+PA++ V VLE + + N++LV+ 
Sbjct: 167 AAVDGTWGLVMQTINKPIGEDRHHGSRRQI---SPYGQPAVTHVKVLENDNENNTSLVEC 223

Query: 265 KIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPG 324
           +I++GR HQIR+HLS IGHP++GD LY                     GG +R ++ +  
Sbjct: 224 QIETGRTHQIRVHLSGIGHPIIGDTLY---------------------GGSSRANRIM-- 260

Query: 325 DCGYHLHAHRLFLSHPITNEIIEMIAP 351
                LHA +L L+HP   + +   AP
Sbjct: 261 -----LHAEKLHLNHPFKGKEMNFSAP 282


>UniRef100_UPI00003CA5D4 UPI00003CA5D4 UniRef100 entry
          Length = 289

 Score =  124 bits (310), Expect = 5e-27
 Identities = 94/301 (31%), Positives = 151/301 (49%), Gaps = 61/301 (20%)

Query: 56  SDQITLDARVVTDPNTILRVGSKL-----VYHRIPWKEPDAPHTIEVLYEDDDIIALNKP 110
           S  + L+ + + D NT L VG+ L     ++ +IP  E D    +E++YEDD ++ +NKP
Sbjct: 38  SQNVLLNNKPLDDWNTPLFVGASLSLPIFLHDKIPVYEYD----LEIIYEDDFLLVVNKP 93

Query: 111 SGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLA 170
             ++  P   ++  T    +Q+           Q  + + VHRL + TSG++L AK KLA
Sbjct: 94  VDMKTHPNDSYETDTCANAVQYYLEKTG-----QDTNALAVHRLDQTTSGLVLFAKNKLA 148

Query: 171 RARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGV 230
            A L+        ++E +  H         + Y A V G       TIN+PIG  ++ G 
Sbjct: 149 IAGLSW-------QMENRAIH---------RTYLAAVDGTWGLVMQTINKPIGEDRHHGS 192

Query: 231 AKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPL 290
            + +   S  G+PA++ V VLE + ++N++LV+ +I++GR HQIR+HLS IGHP++GD L
Sbjct: 193 RRQI---SPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIGDTL 249

Query: 291 YAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIA 350
           Y                     GG  R ++ +       LHA +L L+HP   + +   A
Sbjct: 250 Y---------------------GGSPRANRIM-------LHAEKLHLNHPFKGKEMNFSA 281

Query: 351 P 351
           P
Sbjct: 282 P 282


>UniRef100_Q9CGU4 Pseudouridine synthase [Lactococcus lactis]
          Length = 301

 Score =  124 bits (310), Expect = 5e-27
 Identities = 86/275 (31%), Positives = 127/275 (45%), Gaps = 56/275 (20%)

Query: 95  IEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRL 154
           +E++YED D+  +NKP G+ V P       T++  + +   + S+I    +P  V  HR+
Sbjct: 77  LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHIKDLSSINGVIRPGIV--HRI 134

Query: 155 GRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINND 214
            + TSG+L+ AK   A   LA+   D TS+                + Y A+V G I ND
Sbjct: 135 DKDTSGLLMIAKNDKAHESLAAQLKDKTSK----------------RRYLAIVHGEIAND 178

Query: 215 QVTINQPIGMV----KYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGR 270
           + TI  PIG      K   V  G       GKPA++   VLER      TL+ +++++GR
Sbjct: 179 KGTIEAPIGRNLKDRKKQAVVSG-------GKPAVTHFEVLERFY--GYTLIALRLETGR 229

Query: 271 PHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHL 330
            HQIR+H+++IGHP+ GDPLY                          P+K +  + G  L
Sbjct: 230 THQIRVHMNYIGHPVAGDPLYG-------------------------PNKTLTPNKGQFL 264

Query: 331 HAHRLFLSHPITNEIIEMIAPLPSILQTHEEAIAQ 365
           HA  L   HP T E +E     P I     E + +
Sbjct: 265 HAETLGFDHPTTGEFMEFQVDAPEIFNEQLEKLRE 299


>UniRef100_Q8Y532 Lmo2244 protein [Listeria monocytogenes]
          Length = 289

 Score =  124 bits (310), Expect = 5e-27
 Identities = 94/301 (31%), Positives = 151/301 (49%), Gaps = 61/301 (20%)

Query: 56  SDQITLDARVVTDPNTILRVGSKL-----VYHRIPWKEPDAPHTIEVLYEDDDIIALNKP 110
           S  + L+ + + D NT L VG+ L     ++ +IP  E D    +E++YEDD ++ +NKP
Sbjct: 38  SQNVLLNNKPLDDWNTPLFVGASLSLPIFLHDKIPVYEYD----LEIIYEDDFLLVVNKP 93

Query: 111 SGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLA 170
             ++  P   ++  T    +Q+           Q  + + VHRL + TSG++L AK KLA
Sbjct: 94  VDMKTHPNDSYETDTCANAVQYYLEKTG-----QDANALAVHRLDQTTSGLVLFAKNKLA 148

Query: 171 RARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGV 230
            A L+        ++E +  H         + Y A V G       TIN+PIG  ++ G 
Sbjct: 149 IAGLSW-------QMENRAIH---------RTYLAAVDGTWGLVMQTINKPIGEDRHHGS 192

Query: 231 AKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPL 290
            + +   S  G+PA++ V VLE + ++N++LV+ +I++GR HQIR+HLS IGHP++GD L
Sbjct: 193 RRQI---SPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIGDTL 249

Query: 291 YAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIA 350
           Y                     GG  R ++ +       LHA +L L+HP   + +   A
Sbjct: 250 Y---------------------GGSPRANRIM-------LHAEKLHLNHPFKGKEMNFSA 281

Query: 351 P 351
           P
Sbjct: 282 P 282


>UniRef100_Q71XC2 Ribosomal large subunit pseudouridine synthase, RluD subfamily
           [Listeria monocytogenes]
          Length = 289

 Score =  124 bits (310), Expect = 5e-27
 Identities = 94/301 (31%), Positives = 151/301 (49%), Gaps = 61/301 (20%)

Query: 56  SDQITLDARVVTDPNTILRVGSKL-----VYHRIPWKEPDAPHTIEVLYEDDDIIALNKP 110
           S  + L+ + + D NT L VG+ L     ++ +IP  E D    +E++YEDD ++ +NKP
Sbjct: 38  SQNVLLNNKPLDDWNTPLFVGASLSLPVFLHDKIPVYEYD----LEIIYEDDFLLVVNKP 93

Query: 111 SGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLA 170
             ++  P   ++  T    +Q+           Q  + + VHRL + TSG++L AK KLA
Sbjct: 94  VDMKTHPNDSYETDTCANAVQYYLEKTG-----QDANALAVHRLDQTTSGLVLFAKNKLA 148

Query: 171 RARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGV 230
            A L+        ++E +  H         + Y A V G       TIN+PIG  ++ G 
Sbjct: 149 IAGLSW-------QMENRAIH---------RTYLAAVDGTWGLVMQTINKPIGEDRHHGS 192

Query: 231 AKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPL 290
            + +   S  G+PA++ V VLE + ++N++LV+ +I++GR HQIR+HLS IGHP++GD L
Sbjct: 193 RRQI---SPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPIIGDTL 249

Query: 291 YAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIA 350
           Y                     GG  R ++ +       LHA +L L+HP   + +   A
Sbjct: 250 Y---------------------GGSPRANRIM-------LHAEKLHLNHPFKGKEMNFSA 281

Query: 351 P 351
           P
Sbjct: 282 P 282


>UniRef100_Q5QTU5 Pseudouridylate synthase [Idiomarina loihiensis L2TR]
          Length = 322

 Score =  124 bits (310), Expect = 5e-27
 Identities = 106/348 (30%), Positives = 172/348 (48%), Gaps = 48/348 (13%)

Query: 15  NDGLSYDDVVRPSDAGLTLIEFYSTKYK--SSAPLQGWLQRIKSDQITLDARVVTDPNTI 72
           N  +  + +V  S AG  L +  +  +   S + L+ W   I   ++T+D +V+  P   
Sbjct: 2   NKSIELEAIVTESLAGKRLDQALAELFPDYSRSRLKSW---ITDGKVTIDTKVIEKPREK 58

Query: 73  LRVGSKL-VYHRIPWKEPDA--PHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQ 129
           +  G+ + V   I  +E  A  P  ++++YEDDDI+ +NKP+GL V PG     RT+L  
Sbjct: 59  VVAGALVAVDAEIEGEERHAAQPVELDIVYEDDDILVINKPAGLVVHPGAGAPDRTLLNG 118

Query: 130 LQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKG 189
           L         +     P    +HRL + T+G+++ A+   A+ +L S   D         
Sbjct: 119 LLHYDPQLDLV-----PRAGIIHRLDKDTTGLMVVARNVPAQTQLVSMMQDRD------- 166

Query: 190 RHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVH 249
                    I + Y A+ +G++    + ++QPIG  ++P     + V  QSGKPA++   
Sbjct: 167 ---------ITREYEAVCNGVMTAGGM-VDQPIG--RHPTKRTHMAVV-QSGKPAVTHYR 213

Query: 250 VLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESF 309
           VL+R      TL++++++SGR HQIR+H++ I HPL+GD  Y  GG+P+           
Sbjct: 214 VLDRY--RAHTLLRLRLESGRTHQIRVHMAHIRHPLVGDLTY--GGRPR-------PPKQ 262

Query: 310 AEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSILQ 357
           AED    R  + + G     LHA  L L HPIT + +E   P P+  Q
Sbjct: 263 AED----RLLQTLRGFNRQALHAASLGLHHPITGDWLEFNVPRPTDFQ 306


>UniRef100_Q6MT30 Pseudouridine synthase [Mycoplasma mycoides]
          Length = 310

 Score =  122 bits (307), Expect = 1e-26
 Identities = 87/305 (28%), Positives = 157/305 (50%), Gaps = 52/305 (17%)

Query: 54  IKSDQITLDARVVTDPNTILRVGSKL-VYHRIPWKEPDAPHT----IEVLYEDDDIIALN 108
           IK + I+++ +++T+ N +++  S++ +  + P  +P+        ++++Y+DDD++ +N
Sbjct: 37  IKEECISVNNQIITNNNFLVKPNSQITITIKDPILDPNLVKNDEIDLDIIYQDDDLLVIN 96

Query: 109 KPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTK 168
           K + + V P       T++  L       S+I    +P  V  HR+ + T+G+L+ AK  
Sbjct: 97  KQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIV--HRIDKQTTGLLIVAKND 154

Query: 169 LARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYP 228
                L+  F +                 +I K Y A+V+G+I  ++  I+ PIG  +  
Sbjct: 155 KTHKLLSEMFKNH----------------QIYKEYLAIVTGVIKPNKGLIDAPIGRSQTD 198

Query: 229 GVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGD 288
              K + V +++ K A++   V+ER  K  +TLV+ +IQ+GR HQIR+H ++I HP+L D
Sbjct: 199 --RKKMSVTAKNSKQAITTFEVVERFFK--NTLVKCQIQTGRTHQIRVHFNYINHPVLND 254

Query: 289 PLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEM 348
           P+Y    Q      +F                    D G +LHA++L  +HPIT + IE+
Sbjct: 255 PVYGKKHQ------EFT-------------------DFGQYLHAYKLKFTHPITKKEIEL 289

Query: 349 IAPLP 353
           I+PLP
Sbjct: 290 ISPLP 294


>UniRef100_Q8Y657 Lmo1843 protein [Listeria monocytogenes]
          Length = 303

 Score =  122 bits (305), Expect = 2e-26
 Identities = 98/320 (30%), Positives = 145/320 (44%), Gaps = 59/320 (18%)

Query: 54  IKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTI------EVLYEDDDIIAL 107
           +K+  IT++  +   PN  ++VG ++ Y     +EP+    +      ++ +ED D++ +
Sbjct: 36  LKNGDITVNGELAK-PNYKVQVGDEIHYEV---REPEELEVLAEDIPLDIYFEDKDMLVV 91

Query: 108 NKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKT 167
           NKP G+ V P       T++  L +  ++ S I    K  P  VHR+ + TSG+L+ AK 
Sbjct: 92  NKPEGMVVHPSAGHASGTLVNALLFHCDDLSGING--KIRPGIVHRIDKDTSGLLMVAKN 149

Query: 168 KLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKY 227
             A   LA    D TS  E                Y ALV G I + + TI  PIG  K 
Sbjct: 150 DHAHESLAKQLKDKTSDRE----------------YIALVHGDIVHQKGTIEAPIGRAKE 193

Query: 228 PGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLG 287
               +      + GK A +   VLER      TL+  K+ +GR HQIR+HL +IGHPL G
Sbjct: 194 D---RQKMAVVRDGKEARTHFEVLER--LPGYTLINCKLDTGRTHQIRVHLKYIGHPLAG 248

Query: 288 DPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIE 347
           DP Y                          P   + G+ G  LHA +L   HP TNE + 
Sbjct: 249 DPKYG-------------------------PKNTIKGN-GQFLHAAKLGFDHPTTNERMT 282

Query: 348 MIAPLPSILQTHEEAIAQAQ 367
             APLPS  +   +++ Q +
Sbjct: 283 FEAPLPSSFEKALKSLRQEE 302


>UniRef100_Q92AG5 Lin1957 protein [Listeria innocua]
          Length = 302

 Score =  120 bits (300), Expect = 8e-26
 Identities = 99/320 (30%), Positives = 145/320 (44%), Gaps = 60/320 (18%)

Query: 54  IKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKE-----PDAPHTIEVLYEDDDIIALN 108
           +K+  IT++  +   PN  ++VG ++ Y     +E      D P  +++ +ED D++ +N
Sbjct: 36  LKNGDITVNGELAK-PNYKVQVGDEIRYEAREPEELEILAEDIP--LDIYFEDKDMLVVN 92

Query: 109 KPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTK 168
           KP G+ V P       T++  L +  ++ S I    K  P  VHR+ + TSG+L+ AK  
Sbjct: 93  KPEGMVVHPSAGHASGTLVNALLFHCDDLSGING--KIRPGIVHRIDKDTSGLLMVAKND 150

Query: 169 LARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYP 228
            A   LA    D TS  E                Y ALV G I + + TI  PIG  K  
Sbjct: 151 HAHESLAKQLKDKTSDRE----------------YIALVHGDIVHQKGTIEAPIGRAKED 194

Query: 229 GVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGD 288
              +      + GK A +   V+ER      TL+  K+ +GR HQIR+HL +IGHPL GD
Sbjct: 195 ---RQKMAVVRDGKEARTHFEVIER--LPGYTLINCKLDTGRTHQIRVHLKYIGHPLAGD 249

Query: 289 PLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEM 348
           P Y                          P   + G+ G  LHA +L   HP TNE +  
Sbjct: 250 PKYG-------------------------PKNTIKGN-GQFLHAAKLGFDHPTTNERMTF 283

Query: 349 IAPLPSILQTHEEAIAQAQQ 368
            APLP    + E+A+   +Q
Sbjct: 284 EAPLP---DSFEQALKSLRQ 300


>UniRef100_Q8R9R1 Pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter
           tengcongensis]
          Length = 309

 Score =  120 bits (300), Expect = 8e-26
 Identities = 95/317 (29%), Positives = 145/317 (44%), Gaps = 54/317 (17%)

Query: 37  YSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIE 96
           YS  Y      +G L  +    +    +V  D   I+ +        +P   P     ++
Sbjct: 30  YSRSYIKKLIEEG-LVLVNGKNVKPSYKVKEDDEVIVNIKEAEKIEVVPENIP-----LD 83

Query: 97  VLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGR 156
           +LYED+DII +NKP G+ V P       T++  L +   N S I    +P  V  HRL +
Sbjct: 84  ILYEDEDIIVINKPQGMVVHPAPGNYSGTLVNALLYHCKNLSGINGILRPGIV--HRLDK 141

Query: 157 GTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQV 216
            TSG+++ AK   A   L++   + +                + K Y A+V G+I  ++ 
Sbjct: 142 DTSGVMVVAKNDKAHMSLSNQIKERS----------------VLKKYVAIVEGVIKEEEG 185

Query: 217 TINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRI 276
            I  PIG  ++P   K + V  Q G+ AL++  VLER   +N+T V+  I++GR HQIR+
Sbjct: 186 KIEAPIG--RHPVDRKRMAVV-QDGRYALTLYKVLERF--KNNTFVEATIKTGRTHQIRV 240

Query: 277 HLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLF 336
           HLS+IGHP++GDP+Y                      GY +    + G     LH+  L 
Sbjct: 241 HLSYIGHPVVGDPVY----------------------GYKKQKFKLEGQA---LHSKVLG 275

Query: 337 LSHPITNEIIEMIAPLP 353
             HP     +E  APLP
Sbjct: 276 FIHPTKGVYMEFEAPLP 292


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 656,916,413
Number of Sequences: 2790947
Number of extensions: 29541728
Number of successful extensions: 61941
Number of sequences better than 10.0: 1507
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 57654
Number of HSP's gapped (non-prelim): 1912
length of query: 371
length of database: 848,049,833
effective HSP length: 129
effective length of query: 242
effective length of database: 488,017,670
effective search space: 118100276140
effective search space used: 118100276140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)