BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126011.4 + phase: 0 /pseudo
(133 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M1C6 Hypothetical protein T2O9.150 [Arabidopsis thal... 78 4e-14
UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana] 68 5e-11
UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [... 68 5e-11
UniRef100_UPI000029E7C3 UPI000029E7C3 UniRef100 entry 33 1.1
UniRef100_Q6QJ82 Leucine rich hrp associated protein [Xanthomona... 32 2.4
UniRef100_Q93RG4 Hrp-associated protein [Xanthomonas oryzae] 32 2.4
UniRef100_Q7XHD8 Putative copia-type polyprotein [Oryza sativa] 32 3.1
UniRef100_Q7Y141 Putative polyprotein [Oryza sativa] 32 3.1
UniRef100_Q8W3A4 Putative gag-pol polyprotein [Oryza sativa] 32 3.1
UniRef100_O62079 Hypothetical protein C25F9.5 [Caenorhabditis el... 32 3.1
UniRef100_UPI000025D1F8 UPI000025D1F8 UniRef100 entry 31 7.0
UniRef100_Q8YYT7 WD-repeat containing protein [Anabaena sp.] 31 7.0
UniRef100_UPI00001CEAC4 UPI00001CEAC4 UniRef100 entry 30 9.1
UniRef100_Q88DW4 Hypothetical protein [Pseudomonas putida] 30 9.1
UniRef100_Q6M0Q1 Hypothetical protein precursor [Methanococcus m... 30 9.1
>UniRef100_Q9M1C6 Hypothetical protein T2O9.150 [Arabidopsis thaliana]
Length = 1339
Score = 78.2 bits (191), Expect = 4e-14
Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGG-PLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
NFLRS+E W LV++G+ + G P++ A++ E LK LKVKN+L AIDR+I+ETI
Sbjct: 28 NFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLFQAIDREILETI 87
Query: 88 LEKNTLKKIWASMRGKDKG 106
L+K+T K IW SM+ K +G
Sbjct: 88 LDKSTSKAIWESMKKKYQG 106
>UniRef100_Q9FH39 Copia-type polyprotein [Arabidopsis thaliana]
Length = 1334
Score = 67.8 bits (164), Expect = 5e-11
Identities = 33/78 (42%), Positives = 50/78 (63%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETIL 88
N +RSKE+W +++ G+ R LT A++ E +K KVKNYL +ID+ I++TIL
Sbjct: 25 NLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFASIDKTILKTIL 84
Query: 89 EKNTLKKIWASMRGKDKG 106
+K T K +W SM+ K +G
Sbjct: 85 QKETSKDLWESMKRKYQG 102
>UniRef100_Q9C7Y1 Copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana]
Length = 1334
Score = 67.8 bits (164), Expect = 5e-11
Identities = 33/78 (42%), Positives = 50/78 (63%)
Query: 29 NFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETIL 88
N +RSKE+W +++ G+ R LT A++ E +K KVKNYL +ID+ I++TIL
Sbjct: 25 NLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFASIDKTILKTIL 84
Query: 89 EKNTLKKIWASMRGKDKG 106
+K T K +W SM+ K +G
Sbjct: 85 QKETSKDLWESMKRKYQG 102
>UniRef100_UPI000029E7C3 UPI000029E7C3 UniRef100 entry
Length = 219
Score = 33.5 bits (75), Expect = 1.1
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Query: 33 SKEYWSLVD----DGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAID 80
+K +W D G + S LT + YE KY+ V+NYL+H ID
Sbjct: 61 NKNFWLSFDTQSLSGTMSIDSNDGLT--REDADYEFQTKYINVRNYLIHIID 110
>UniRef100_Q6QJ82 Leucine rich hrp associated protein [Xanthomonas oryzae]
Length = 646
Score = 32.3 bits (72), Expect = 2.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 28 GNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
G FL +L DG+ ++G GGP + KT + MLK+ ++H D++ +
Sbjct: 490 GQFLNDHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKH-----NIMHTQDQETALGL 544
Query: 88 LEK 90
L++
Sbjct: 545 LQQ 547
>UniRef100_Q93RG4 Hrp-associated protein [Xanthomonas oryzae]
Length = 646
Score = 32.3 bits (72), Expect = 2.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 28 GNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
G FL +L DG+ ++G GGP + KT + MLK+ ++H D++ +
Sbjct: 490 GQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKH-----NIMHTQDQETALGL 544
Query: 88 LEK 90
L++
Sbjct: 545 LQQ 547
>UniRef100_Q7XHD8 Putative copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 32.0 bits (71), Expect = 3.1
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>UniRef100_Q7Y141 Putative polyprotein [Oryza sativa]
Length = 1335
Score = 32.0 bits (71), Expect = 3.1
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>UniRef100_Q8W3A4 Putative gag-pol polyprotein [Oryza sativa]
Length = 1167
Score = 32.0 bits (71), Expect = 3.1
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 31 LRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEK 90
L S+ W +V++G +G LTA ++K+ E + K + + + I+
Sbjct: 25 LLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA 84
Query: 91 NTLKKIWASMRGKDKGYKSI*GKGLRT 117
K+ W ++ + +G + + L+T
Sbjct: 85 KKSKEAWDKLKEEFQGSQKVLAVKLQT 111
>UniRef100_O62079 Hypothetical protein C25F9.5 [Caenorhabditis elegans]
Length = 707
Score = 32.0 bits (71), Expect = 3.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 38 SLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIW 97
S DD RL +K Y M L ++NY+L ++ K +E + K ++KIW
Sbjct: 617 SFTDDTGGRLLRAWTFAKLCRKKAYAMSHSNLLLRNYILESV--KSMEECINKADIEKIW 674
Query: 98 ASMRGKD 104
+ D
Sbjct: 675 KQLEASD 681
>UniRef100_UPI000025D1F8 UPI000025D1F8 UniRef100 entry
Length = 936
Score = 30.8 bits (68), Expect = 7.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 52 PLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILE 89
PL Q TPYEM++ ++ K Y L RK++E +LE
Sbjct: 314 PLPIEYQLTPYEMLMDDIRSKRYKL----RKVMELLLE 347
>UniRef100_Q8YYT7 WD-repeat containing protein [Anabaena sp.]
Length = 1329
Score = 30.8 bits (68), Expect = 7.0
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 62 YEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASMRGKD 104
+ M KYL V N L + D K++ T ++ K+W +++GK+
Sbjct: 726 HNKMTKYLSVVNNLFFSPDGKVVATTSRRDATTKLW-NLQGKE 767
>UniRef100_UPI00001CEAC4 UPI00001CEAC4 UniRef100 entry
Length = 764
Score = 30.4 bits (67), Expect = 9.1
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 2/67 (2%)
Query: 30 FLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAID-RKIIETIL 88
F R+ E W + D G R GSGG L A K P+ M + + +H + +K+ I+
Sbjct: 75 FPRASEGWGVEDSGKVRFGSGGDL-GAFYKHPWGFMEAVVGLVKLGIHCVTCQKVAIKIV 133
Query: 89 EKNTLKK 95
+ L +
Sbjct: 134 NREKLSE 140
>UniRef100_Q88DW4 Hypothetical protein [Pseudomonas putida]
Length = 978
Score = 30.4 bits (67), Expect = 9.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 55 AAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETI 87
A E P++++LK ++++NYL+H DR E +
Sbjct: 358 AKEPSKPWQVLLKDVQLRNYLVHLADRSQKEPV 390
>UniRef100_Q6M0Q1 Hypothetical protein precursor [Methanococcus maripaludis]
Length = 275
Score = 30.4 bits (67), Expect = 9.1
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 32 RSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIE--TILE 89
+S +Y+S +D + +GS +T + ++ L Y K ++Y L+A IIE L
Sbjct: 116 KSLKYFSKIDSRIEEIGSKLKVTDSWVDEDFKNALNYAKDRDYTLNASKEDIIEIYEFLS 175
Query: 90 KN 91
KN
Sbjct: 176 KN 177
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.333 0.147 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,372,820
Number of Sequences: 2790947
Number of extensions: 7858706
Number of successful extensions: 27358
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 27347
Number of HSP's gapped (non-prelim): 15
length of query: 133
length of database: 848,049,833
effective HSP length: 109
effective length of query: 24
effective length of database: 543,836,610
effective search space: 13052078640
effective search space used: 13052078640
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 67 (30.4 bits)
Medicago: description of AC126011.4