BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.10 - phase: 0 /pseudo
(214 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XLJ7 OSJNBa0009K15.13 protein [Oryza sativa] 50 4e-05
UniRef100_Q8LMT3 Putative retroelement [Oryza sativa] 47 3e-04
UniRef100_Q8SB91 Hypothetical protein OSJNBa0042H09.24 [Oryza sa... 44 0.004
UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum] 41 0.024
UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa] 40 0.041
UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcrip... 40 0.054
UniRef100_Q7XF82 Putative retroelement [Oryza sativa] 39 0.070
UniRef100_Q6ATM7 Hypothetical protein OSJNBb0021K20.15 [Oryza sa... 39 0.070
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 38 0.16
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 38 0.20
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 37 0.27
UniRef100_Q7XR27 OSJNBa0014F04.20 protein [Oryza sativa] 36 0.78
UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sa... 36 0.78
UniRef100_Q7XUX8 OSJNBa0027G07.11 protein [Oryza sativa] 35 1.7
UniRef100_Q6K9E5 Hypothetical protein OJ1471_E11.12 [Oryza sativa] 35 1.7
UniRef100_Q8SA91 Putative gag-pol polyprotein [Zea mays] 35 1.7
UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa] 34 2.3
UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa] 34 2.9
UniRef100_Q93VN3 P0487H02.8 protein [Oryza sativa] 34 2.9
UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa] 34 2.9
>UniRef100_Q7XLJ7 OSJNBa0009K15.13 protein [Oryza sativa]
Length = 779
Score = 50.1 bits (118), Expect = 4e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 138 GVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDR 197
G GG S GS +W+++ L + W + ++G+G +V FW DVW+GE+ L +
Sbjct: 538 GQGGGFFQSSPEGGSQFWKSL--LEVKNWMKLGSAYNIGNGEAVRFWDDVWLGEVPLKIQ 595
Query: 198 FSRLYELSLLKGKTIA 213
F +Y + KT++
Sbjct: 596 FPYIYSICANPDKTVS 611
>UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]
Length = 764
Score = 47.0 bits (110), Expect = 3e-04
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 2/73 (2%)
Query: 141 GGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSR 200
GG S + S +W+ + + W S +G+G + FW+DVW+GE L ++
Sbjct: 431 GGFFQSKAEESSQFWKGLHEVKK--WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPN 488
Query: 201 LYELSLLKGKTIA 213
+Y + K KT++
Sbjct: 489 IYRMCADKEKTVS 501
>UniRef100_Q8SB91 Hypothetical protein OSJNBa0042H09.24 [Oryza sativa]
Length = 137
Score = 43.5 bits (101), Expect = 0.004
Identities = 18/42 (42%), Positives = 27/42 (63%)
Query: 171 VSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTI 212
+ + +GDG+ LFW DVW G+ L ++ LY +SL GKT+
Sbjct: 1 MEKKVGDGNYTLFWEDVWYGQTPLRVQYPGLYGVSLQCGKTV 42
>UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum]
Length = 327
Score = 40.8 bits (94), Expect = 0.024
Identities = 26/91 (28%), Positives = 45/91 (48%), Gaps = 10/91 (10%)
Query: 128 LWFRVLAARNGVEGGNLCSGGRD---GSAWWRNIAALPSEGW--FHNNVSRSLGDGSSVL 182
LW V+ A+ G + + CS G+ WR+I L W F + S +G+G +
Sbjct: 165 LWKEVIQAKYGSDS-HWCSNKVSTSYGTGVWRDIRKL----WEIFFGDASLMVGNGEHIQ 219
Query: 183 FWTDVWVGELSLHDRFSRLYELSLLKGKTIA 213
FW D+W+G+ L + F ++ ++ TI+
Sbjct: 220 FWKDIWLGDTPLMNVFPSIFLIASHPDSTIS 250
>UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa]
Length = 389
Score = 40.0 bits (92), Expect = 0.041
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 167 FHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTIA 213
F+ + +G+G + LFW D W+G L ++F LY ++L K T+A
Sbjct: 7 FYKFCTNVVGNGRNTLFWEDNWIGGKPLAEQFRDLYNITLTKKITVA 53
>UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1614
Score = 39.7 bits (91), Expect = 0.054
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 2/77 (2%)
Query: 126 DSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWT 185
DSL +L + +GG R S +W+ + L W +GDGS + FW
Sbjct: 1503 DSLCIELLRRKYLQDGGFFQCKERYASQFWKGL--LNIRRWLSLGSVWQVGDGSHISFWR 1560
Query: 186 DVWVGELSLHDRFSRLY 202
DVW G+ L F ++
Sbjct: 1561 DVWWGQCPLRTLFPAIF 1577
>UniRef100_Q7XF82 Putative retroelement [Oryza sativa]
Length = 586
Score = 39.3 bits (90), Expect = 0.070
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 152 SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLK 208
S +W+ + + + F+ S+ LGDG LFW D W+G L +F L+ ++ K
Sbjct: 385 SHFWQGLMEIKNS--FYKFCSKKLGDGKQTLFWEDNWIGGRPLALQFPTLFNITTTK 439
>UniRef100_Q6ATM7 Hypothetical protein OSJNBb0021K20.15 [Oryza sativa]
Length = 352
Score = 39.3 bits (90), Expect = 0.070
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRS-LGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKG 209
GS WW++I L + +SR LG+GSS FW D+W L RL+ ++ K
Sbjct: 219 GSFWWKDICKLMD---IYRGISRCILGNGSSCSFWDDIWSDGPPLSLHMPRLHSFAINKN 275
Query: 210 KTI 212
++
Sbjct: 276 VSV 278
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 38.1 bits (87), Expect = 0.16
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 20/127 (15%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESG-GWRFEGKENKRI*FSIIREVVLVDRDSLWFR 131
F WG + +++ L + C +E G G R NK + + + +L D++SLW R
Sbjct: 688 FLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKAL-VAKVGWRLLQDKESLWAR 746
Query: 132 VLAARNGVEGGNLCSGGRDGSAW---WRNIAA------LPSEGWFHNNVSRSLGDGSSVL 182
V+ + V G S + W WR++A + GW GDG ++
Sbjct: 747 VVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVP-------GDGCTIR 799
Query: 183 FWTDVWV 189
FW D W+
Sbjct: 800 FWLDRWL 806
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 37.7 bits (86), Expect = 0.20
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
Query: 152 SAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKT 211
S +W+ + + + F + ++ +G+G LFW D W+G L +F LY + + K T
Sbjct: 710 SHFWQGVMEVKDD--FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITKRIT 767
Query: 212 IA 213
IA
Sbjct: 768 IA 769
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 37.4 bits (85), Expect = 0.27
Identities = 32/137 (23%), Positives = 55/137 (39%), Gaps = 30/137 (21%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESGGWRFEGKENKRI*FSIIREVVLVDRDSLWFRV 132
F WG + +++ + C SE G + ++ + S + ++ D SLW R+
Sbjct: 350 FLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARI 409
Query: 133 LAARNGVEGGNLCSGGRDG---------SAWWRNIA------ALPSEGWFHNNVSRSLGD 177
+ V+ RDG S+ WR++A +P W +GD
Sbjct: 410 MRCNYRVQDV------RDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWV-------IGD 456
Query: 178 GSSVLFWTDVWVGELSL 194
G +LFW D W+ + L
Sbjct: 457 GREILFWMDKWLTNIPL 473
>UniRef100_Q7XR27 OSJNBa0014F04.20 protein [Oryza sativa]
Length = 723
Score = 35.8 bits (81), Expect = 0.78
Identities = 17/62 (27%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGK 210
GS WWR+I +L F ++ G++ LFW D+W + + L+ ++L K
Sbjct: 582 GSFWWRDITSLSDI--FRGIAKCTIQSGATALFWNDLWNDDFKC-TSYPNLFSVTLYKND 638
Query: 211 TI 212
++
Sbjct: 639 SV 640
>UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sativa]
Length = 720
Score = 35.8 bits (81), Expect = 0.78
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLY 202
GS WW++I L F S ++G G SVLFW D W +L L + F L+
Sbjct: 604 GSFWWKDIFRLIP--MFRALSSVTVGSGDSVLFWKDNWNNQL-LENEFPVLF 652
>UniRef100_Q7XUX8 OSJNBa0027G07.11 protein [Oryza sativa]
Length = 364
Score = 34.7 bits (78), Expect = 1.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 167 FHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLKGKTI 212
F + + ++GDG++V FW W+G D +Y +S +GK++
Sbjct: 156 FAASTNITIGDGNTVRFWESAWIGGRRPKDLMPLVYTISKNRGKSL 201
>UniRef100_Q6K9E5 Hypothetical protein OJ1471_E11.12 [Oryza sativa]
Length = 379
Score = 34.7 bits (78), Expect = 1.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 161 LPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYEL 204
L + W V++ + +G V FW DVW + L RF L+E+
Sbjct: 13 LKCKEWLSRLVTKEVHNGRDVSFWNDVWCYNVPLKVRFPDLFEI 56
>UniRef100_Q8SA91 Putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 34.7 bits (78), Expect = 1.7
Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 7/65 (10%)
Query: 142 GNLC----SGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDR 197
G +C +G G+ W A LP + + + S+ DG S FW D W GE L +
Sbjct: 2146 GRVCLATLTGDLSGNHWMTLRALLPL---YRSITTCSIKDGRSTAFWFDAWHGEDDLSTK 2202
Query: 198 FSRLY 202
F L+
Sbjct: 2203 FLSLF 2207
>UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa]
Length = 593
Score = 34.3 bits (77), Expect = 2.3
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 149 RDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSLLK 208
R S +W + + F + S L DG + FW D W+G SL + LY L K
Sbjct: 345 RGDSHFWTGLMGVKDT--FSSFGSFKLQDGLQIRFWEDCWLGNQSLEKIYPSLYNLVRNK 402
Query: 209 GKTIA 213
+A
Sbjct: 403 NVVVA 407
>UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa]
Length = 746
Score = 33.9 bits (76), Expect = 2.9
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 151 GSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELS 205
GS WW++I L + +N++ + GD S LFW D+W ++ L + + L+ +
Sbjct: 659 GSFWWKDILRLNTIFRAISNITPNQGD--SFLFWKDLWSNDI-LQESMTNLFSFA 710
>UniRef100_Q93VN3 P0487H02.8 protein [Oryza sativa]
Length = 297
Score = 33.9 bits (76), Expect = 2.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 149 RDGSAWWRNIAALPSEG---WFHNNVSRSLGDGSSVLFWTDVWVGELSL 194
R G +W ++ A F + LGDG S LFWTD W+ S+
Sbjct: 61 RSGHPYWSDLKASVERSVSDMFAASTFSILGDGQSTLFWTDRWIDGRSI 109
>UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa]
Length = 1199
Score = 33.9 bits (76), Expect = 2.9
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 149 RDGSAWWRNIAALPSE----GWFHNNVSRSLGDGSSVLFWTDVWVGELSL 194
R G +W ++ A P E F + LGDG S LFWTD W+ S+
Sbjct: 877 RSGHPYWSDLKA-PVERSVSDMFAASTFSILGDGQSTLFWTDRWIDGRSI 925
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.339 0.152 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,447,298
Number of Sequences: 2790947
Number of extensions: 15284405
Number of successful extensions: 45092
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 45068
Number of HSP's gapped (non-prelim): 31
length of query: 214
length of database: 848,049,833
effective HSP length: 122
effective length of query: 92
effective length of database: 507,554,299
effective search space: 46694995508
effective search space used: 46694995508
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC124963.10