BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.9 - phase: 0
(95 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9C861 Hypothetical protein T8E3.1 [Arabidopsis thaliana] 87 1e-16
UniRef100_Q8W5R2 Shoot gravitropism 2 [Arabidopsis thaliana] 87 1e-16
UniRef100_Q6ZC54 Putative shoot gravitropism 2 [Oryza sativa] 77 1e-13
UniRef100_Q9AIS0 Fibronectin binding autolysin [Staphylococcus c... 33 2.2
UniRef100_Q8D312 GltJ protein [Wigglesworthia glossinidia brevip... 32 2.9
UniRef100_Q6G3A5 Lipoprotein releasing system transmembrane prot... 32 2.9
UniRef100_UPI0000306A2F UPI0000306A2F UniRef100 entry 32 4.9
UniRef100_UPI0000369BBF UPI0000369BBF UniRef100 entry 31 8.3
UniRef100_Q6FZX4 Lipoprotein releasing system transmembrane prot... 31 8.3
UniRef100_Q8NGC5 Olfactory receptor 6J2 [Homo sapiens] 31 8.3
>UniRef100_Q9C861 Hypothetical protein T8E3.1 [Arabidopsis thaliana]
Length = 869
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/52 (76%), Positives = 42/52 (79%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
PDLLKNTPSNIARL+DV+EQ RQKYLA T S SDG DVRWYFCK LA N
Sbjct: 18 PDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAEN 69
>UniRef100_Q8W5R2 Shoot gravitropism 2 [Arabidopsis thaliana]
Length = 933
Score = 86.7 bits (213), Expect = 1e-16
Identities = 40/52 (76%), Positives = 42/52 (79%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
PDLLKNTPSNIARL+DV+EQ RQKYLA T S SDG DVRWYFCK LA N
Sbjct: 18 PDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAEN 69
>UniRef100_Q6ZC54 Putative shoot gravitropism 2 [Oryza sativa]
Length = 937
Score = 76.6 bits (187), Expect = 1e-13
Identities = 35/54 (64%), Positives = 40/54 (73%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGM 65
PD L+NTPSNIARL+D +E AR+KYLA T S SDG DVRWYFCK LA +
Sbjct: 33 PDSLRNTPSNIARLEDAIEHCAARRKYLARTKSPSDGEDVRWYFCKLPLADKAL 86
>UniRef100_Q9AIS0 Fibronectin binding autolysin [Staphylococcus caprae]
Length = 1395
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 3 EGSNTPVLLPDLLKNTPSNIARLKDVVEQSKARQ 36
EG+NT VLL D +NTP +KDV Q+ Q
Sbjct: 973 EGNNTYVLLQDSTRNTPLGWVNVKDVTSQNIGNQ 1006
>UniRef100_Q8D312 GltJ protein [Wigglesworthia glossinidia brevipalpis]
Length = 240
Score = 32.3 bits (72), Expect = 2.9
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 53 WYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVC 91
WYF + N + ++SS SF + I+Y FT+ L+C
Sbjct: 79 WYFSVWNKVSNSIISIISSSPSFTIFSNIIYLFTSELIC 117
>UniRef100_Q6G3A5 Lipoprotein releasing system transmembrane protein lolC [Bartonella
henselae]
Length = 422
Score = 32.3 bits (72), Expect = 2.9
Identities = 17/69 (24%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 13 DLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGMYYVLSSI 72
+L N P ++ R+K ++E+ +Q YL + + +F + N M+++LS I
Sbjct: 233 ELFLNDPDSVDRIKPILEKLIDQQVYLIDWRTRNQA-----FFSALQIERNVMFFILSLI 287
Query: 73 CSFCCINLI 81
+N+I
Sbjct: 288 VLVAALNII 296
>UniRef100_UPI0000306A2F UPI0000306A2F UniRef100 entry
Length = 152
Score = 31.6 bits (70), Expect = 4.9
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 66 YYVLSSICSFCCINLILYYFTTLLV 90
YY++ ICS+C I ++LYY+ T+L+
Sbjct: 52 YYII--ICSYCYIIILLYYYMTILL 74
>UniRef100_UPI0000369BBF UPI0000369BBF UniRef100 entry
Length = 346
Score = 30.8 bits (68), Expect = 8.3
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 47 DGGDVRWYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVCI 92
D G + C + A M ++LSS+ CCI L+ Y +T +++ I
Sbjct: 178 DSGPLLALACADTTAIELMDFMLSSMVILCCIVLVAYSYTYIILTI 223
>UniRef100_Q6FZX4 Lipoprotein releasing system transmembrane protein lolC [Bartonella
quintana]
Length = 422
Score = 30.8 bits (68), Expect = 8.3
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 13 DLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHNGMYYVLSSI 72
+L N P + ++K +VE++ +Q YL + +F + N M+++LS I
Sbjct: 233 ELFLNDPDAVDQIKPIVEKAIDQQVYLIDWRMRNQA-----FFSALQIERNVMFFILSLI 287
Query: 73 CSFCCINLI 81
+N++
Sbjct: 288 VLVAALNIV 296
>UniRef100_Q8NGC5 Olfactory receptor 6J2 [Homo sapiens]
Length = 347
Score = 30.8 bits (68), Expect = 8.3
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 47 DGGDVRWYFCKTSLAHNGMYYVLSSICSFCCINLILYYFTTLLVCI 92
D G + C + A M ++LSS+ CCI L+ Y +T +++ I
Sbjct: 179 DSGPLLALACADTTAIELMDFMLSSMVILCCIVLVAYSYTYIILTI 224
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,998,816
Number of Sequences: 2790947
Number of extensions: 5578113
Number of successful extensions: 16972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16961
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 848,049,833
effective HSP length: 71
effective length of query: 24
effective length of database: 649,892,596
effective search space: 15597422304
effective search space used: 15597422304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC124953.9