BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9AVK4 SCARECROW [Pisum sativum] 100 1e-20
UniRef100_Q9FUZ7 SCARECROW [Zea mays] 70 2e-11
UniRef100_Q6L5Z0 SCARECROW [Oryza sativa] 70 2e-11
UniRef100_Q9M384 SCARECROW1 [Arabidopsis thaliana] 64 8e-10
UniRef100_Q96304 SCARECROW [Arabidopsis thaliana] 64 8e-10
UniRef100_Q7F1I1 SCARECROW protein-like protein [Oryza sativa] 57 1e-07
UniRef100_Q6ULS4 Scarecrow-like 23 [Zea mays] 56 3e-07
UniRef100_Q9FHZ1 SCARECROW gene regulator-like protein [Arabidop... 55 4e-07
UniRef100_Q69XH2 Protein MONOCULM 1 [Oryza sativa] 38 0.083
UniRef100_Q84MM9 Protein MONOCULM 1 [Oryza sativa] 38 0.083
UniRef100_Q9LPT0 Putative transcription factor [Arabidopsis thal... 37 0.11
UniRef100_Q9XE53 Scarecrow-like 5 [Arabidopsis thaliana] 37 0.11
UniRef100_Q8H125 Putative scarecrow protein [Arabidopsis thaliana] 37 0.11
UniRef100_Q94BW9 F17J6.12/F17J6.12 [Arabidopsis thaliana] 37 0.11
UniRef100_Q6EI06 Gibberellic acid insensitive phloem [Cucurbita ... 35 0.54
UniRef100_Q9SLH3 Putative RGA1, giberellin repsonse modulation p... 35 0.70
UniRef100_Q6EI05 Gibberellic acid insensitive phloem B [Cucurbit... 35 0.70
UniRef100_Q941D4 At2g01570/F2I9.19 [Arabidopsis thaliana] 35 0.70
UniRef100_O23725 GRS protein [Arabidopsis thaliana] 35 0.70
UniRef100_O23642 RGA1 protein [Arabidopsis thaliana] 35 0.70
>UniRef100_Q9AVK4 SCARECROW [Pisum sativum]
Length = 819
Score = 100 bits (248), Expect = 1e-20
Identities = 43/45 (95%), Positives = 44/45 (97%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHHN 45
MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPP+HTN IIPHHN
Sbjct: 775 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHTNTIIPHHN 819
>UniRef100_Q9FUZ7 SCARECROW [Zea mays]
Length = 668
Score = 70.1 bits (170), Expect = 2e-11
Identities = 30/33 (90%), Positives = 32/33 (96%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLVE+NG LKLGWKDLCLLTASAWRP
Sbjct: 629 MFPSDGYTLVEENGALKLGWKDLCLLTASAWRP 661
>UniRef100_Q6L5Z0 SCARECROW [Oryza sativa]
Length = 660
Score = 69.7 bits (169), Expect = 2e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTL+E+NG LKLGWKDLCLLTASAWRP
Sbjct: 622 MFPSDGYTLIEENGALKLGWKDLCLLTASAWRP 654
>UniRef100_Q9M384 SCARECROW1 [Arabidopsis thaliana]
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLV+DNG LKLGWKDL LLTASAW P
Sbjct: 619 MFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
>UniRef100_Q96304 SCARECROW [Arabidopsis thaliana]
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLV+DNG LKLGWKDL LLTASAW P
Sbjct: 619 MFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
>UniRef100_Q7F1I1 SCARECROW protein-like protein [Oryza sativa]
Length = 306
Score = 57.0 bits (136), Expect = 1e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
M+P +GYTLVE++G LKLGWKDL LLTAS+W P
Sbjct: 252 MYPWKGYTLVEEDGCLKLGWKDLSLLTASSWEP 284
>UniRef100_Q6ULS4 Scarecrow-like 23 [Zea mays]
Length = 313
Score = 55.8 bits (133), Expect = 3e-07
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
M+P +GYTLVE++ LKLGWKDL LLTASAW P
Sbjct: 270 MYPWKGYTLVEEDACLKLGWKDLSLLTASAWEP 302
>UniRef100_Q9FHZ1 SCARECROW gene regulator-like protein [Arabidopsis thaliana]
Length = 405
Score = 55.5 bits (132), Expect = 4e-07
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
M P GYTLVE+NG L+LGWKDL LLTASAW+
Sbjct: 369 MLPWNGYTLVEENGTLRLGWKDLSLLTASAWK 400
>UniRef100_Q69XH2 Protein MONOCULM 1 [Oryza sativa]
Length = 507
Score = 37.7 bits (86), Expect = 0.083
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
+PSEGY + E G LGW+ LL+ SAW+P
Sbjct: 473 YPSEGYLVQEARGACFLGWQTRPLLSVSAWQP 504
>UniRef100_Q84MM9 Protein MONOCULM 1 [Oryza sativa]
Length = 441
Score = 37.7 bits (86), Expect = 0.083
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
+PSEGY + E G LGW+ LL+ SAW+P
Sbjct: 407 YPSEGYLVQEARGACFLGWQTRPLLSVSAWQP 438
>UniRef100_Q9LPT0 Putative transcription factor [Arabidopsis thaliana]
Length = 526
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 498 SEKYTLEERDGALYLGWKNQPLITSCAWR 526
>UniRef100_Q9XE53 Scarecrow-like 5 [Arabidopsis thaliana]
Length = 306
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 278 SEKYTLEERDGALYLGWKNQPLITSCAWR 306
>UniRef100_Q8H125 Putative scarecrow protein [Arabidopsis thaliana]
Length = 597
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 569 SEKYTLEERDGALYLGWKNQPLITSCAWR 597
>UniRef100_Q94BW9 F17J6.12/F17J6.12 [Arabidopsis thaliana]
Length = 526
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 498 SEKYTLEERDGALYLGWKNQPLITSCAWR 526
>UniRef100_Q6EI06 Gibberellic acid insensitive phloem [Cucurbita maxima]
Length = 579
Score = 35.0 bits (79), Expect = 0.54
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPH 43
EGY + E+ G L LGW L+ SAW+P N ++ H
Sbjct: 543 EGYRVEENEGSLMLGWHTRPLIATSAWKP--GNNPVVAH 579
>UniRef100_Q9SLH3 Putative RGA1, giberellin repsonse modulation protein [Arabidopsis
thaliana]
Length = 587
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
>UniRef100_Q6EI05 Gibberellic acid insensitive phloem B [Cucurbita maxima]
Length = 587
Score = 34.7 bits (78), Expect = 0.70
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNIIPHH 44
EGY + E+NG L LGW L+ SAW+ N+++ H
Sbjct: 550 EGYRVEENNGSLTLGWHTRPLIVTSAWK--LGNNSVVVTH 587
>UniRef100_Q941D4 At2g01570/F2I9.19 [Arabidopsis thaliana]
Length = 587
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
>UniRef100_O23725 GRS protein [Arabidopsis thaliana]
Length = 587
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
>UniRef100_O23642 RGA1 protein [Arabidopsis thaliana]
Length = 587
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,764,672
Number of Sequences: 2790947
Number of extensions: 2415392
Number of successful extensions: 3655
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3605
Number of HSP's gapped (non-prelim): 53
length of query: 45
length of database: 848,049,833
effective HSP length: 21
effective length of query: 24
effective length of database: 789,439,946
effective search space: 18946558704
effective search space used: 18946558704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC124215.1