Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123575.7 - phase: 0 /pseudo
         (378 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]              78  5e-13
UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]               77  1e-12
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...    76  1e-12
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                             73  1e-11
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]                   71  6e-11
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                   67  6e-10
UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop...    67  1e-09
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]               66  1e-09
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]                   65  2e-09
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...    64  7e-09
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]                   64  7e-09
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]         62  3e-08
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]       62  3e-08
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa...    61  6e-08
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                   60  8e-08
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...    60  8e-08
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza...    60  8e-08
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...    57  8e-07
UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabid...    57  1e-06
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or...    56  2e-06

>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
          Length = 1328

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 42/111 (37%), Positives = 67/111 (59%), Gaps = 1/111 (0%)

Query: 5   KWNIEKFTGSND-FGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           K+ + KF G    F +W+ +M+ +LIQQ   +AL GK++ P  +   +  E+++KA SAI
Sbjct: 5   KYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAI 64

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
            L L D V+  +  E     +W KL++LYM+K+ T++  LK+QLY   M E
Sbjct: 65  RLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDE 115


>UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]
          Length = 432

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 40/110 (36%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+++ KF G  +FGLW+ +++ +L QQ+  +ALKG    PA +   +  EM  +A + I 
Sbjct: 43  KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVK--PAKMEDDDCEEMQLQAAATIR 100

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
            CL D+++  V  ET    +W KL++ +M+K+ T+++ LKQ+LY  +M E
Sbjct: 101 RCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQE 150


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
           (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 39/110 (35%), Positives = 64/110 (57%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+ + KF G N F  W+ +MR +LIQQ   + L   ++ P  +   +  +++++A SAI 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
           L L D V+  +  E     +W +L+SLYM+K+ T++  LK+QLY   M E
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 43/120 (35%), Positives = 70/120 (57%), Gaps = 5/120 (4%)

Query: 2   MDSKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEK-TEMNDKAI 60
           M +K+ IEKF G N F LWK+K++ IL +  C+ A+   ++ P   T  +K +EMN+ A+
Sbjct: 1   MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAI---SERPVDFTDDKKWSEMNEDAM 56

Query: 61  SAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNE 120
           + + L + D VL  +  +     +W+ L+ LY  KS  ++  LK++LY  RM ES +  E
Sbjct: 57  ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116


>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
          Length = 382

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 4   SKWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           SK+ + KF G+ +F LW+++++ +L QQ   +AL+    MP  +   +  EM  +A + I
Sbjct: 7   SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQ--ETMPEKIDADKWNEMKAQAAATI 64

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATD 123
            L L D V+ +V  E     +W+KL SL+M+KS T +  LKQQLY  ++ E     +  D
Sbjct: 65  RLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVD 124


>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+++        F LW+VKMR +L QQ   +AL G  +     +  EK + + KAIS I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKT 117
           L L + +L+EV +E     +W KL+ + MTK  T +  LKQ+L+ +++ + ++
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDES 116


>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 12/125 (9%)

Query: 8   IEKFTGSNDFGLWKVKM--RIILI-------QQKCVEALKGKAQMPAHLTPAEKT---EM 55
           +EK  G  D+ LWK K+   I L+       + + +E  +  A+  + LT  E     E 
Sbjct: 8   VEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKEK 67

Query: 56  NDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
             KA S ++L LG+ VLR+V +E     M   LD L+M KS  +R  LKQ+LY Y+M +S
Sbjct: 68  RGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDS 127

Query: 116 KTNNE 120
            T  E
Sbjct: 128 MTIEE 132


>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
          Length = 1181

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+++        F LW+VKMR +L QQ+  +AL G  +     +  EK + + KA+S I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
           L L + +L+EV +E     +W KL+ + MTK  T +  LKQ+L+ +++
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 111


>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
          Length = 1280

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+++        F LW+VKMR +L QQ   +AL G  +     +  EK + + KA+S I 
Sbjct: 40  KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAMSYIH 98

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
           L L + +L+EV +E     +W KL+ + MTK  T +  LKQ+L+ +++
Sbjct: 99  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 146


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 63.9 bits (154), Expect = 7e-09
 Identities = 44/136 (32%), Positives = 64/136 (46%), Gaps = 26/136 (19%)

Query: 8   IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMND---------- 57
           +EKF G  D+ LWK K+   L   + +  L+G  +    +     TE++D          
Sbjct: 8   VEKFDGDGDYILWKEKL---LAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETAT 64

Query: 58  -------------KAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLK 104
                        KA S I+L LG+ VLR+V ++     M   LD L+M KS  +R  LK
Sbjct: 65  SKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLK 124

Query: 105 QQLYFYRMVESKTNNE 120
           Q+LY Y+M E+ T  E
Sbjct: 125 QRLYGYKMSENMTMEE 140


>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
          Length = 1211

 Score = 63.9 bits (154), Expect = 7e-09
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+++        F LW+VKMR +L QQ   +AL G  +     +  EK + + K +S I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
           L L + +L+EV +E     +W KL+ + MTK  T +  LKQ+L+ +++
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKL 111


>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 43/123 (34%), Positives = 63/123 (50%), Gaps = 15/123 (12%)

Query: 8   IEKFTGSNDFGLWKVKM--RIILIQQKCV----EALKGKAQMPAHLTPAEKTEMND---- 57
           +EKF G  D+ +WK K+   I ++    V    E   GK +        EK E       
Sbjct: 8   VEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKMEAF 67

Query: 58  -----KAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
                KA S IVL + D+VLR++ +ET   +M   LD LYM+K+  +R  LKQ+LY ++M
Sbjct: 68  EEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKM 127

Query: 113 VES 115
            E+
Sbjct: 128 SEN 130


>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
          Length = 1230

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 8   IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEK-------------TE 54
           +EKF G  D+ LWK K+   +       AL+    +   L   E+              E
Sbjct: 8   MEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALMEE 67

Query: 55  MNDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
              KA S IVL + D+VLR+  +E    SM   LD LYM+K+  +R  LKQ+LY Y+M E
Sbjct: 68  KRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQE 127

Query: 115 S 115
           +
Sbjct: 128 N 128


>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1326

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           K+++        F LW+VKMR IL Q   + EAL+   +  +    AE+   + KA+  I
Sbjct: 5   KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
            L L + +L+EV +E     +W KL+S+ M+K  T +  +K +L+ +++ ES
Sbjct: 65  QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQES 116


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAI 63
           K+++        F LW+VKMR +L Q   + EAL+   +       AE+   + KA+S I
Sbjct: 5   KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64

Query: 64  VLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
            L L + +L+EV ++     +W KL+S+ M+K  T +  +K +L+ +++ ES
Sbjct: 65  QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHES 116


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 40/123 (32%), Positives = 62/123 (49%), Gaps = 15/123 (12%)

Query: 8   IEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDK--------- 58
           +EKF G  D+ +WK K+   L       ALK +  +   +   + TE  +K         
Sbjct: 8   VEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRRELL 67

Query: 59  ------AISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
                 A SAIVL + D+VLR++ +E    +M   LD LYM+K+  +R   KQ+LY ++M
Sbjct: 68  EEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKM 127

Query: 113 VES 115
            E+
Sbjct: 128 SEN 130


>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
          Length = 1229

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 17  FGLWKVKMRIILIQQKCV-EALKGKAQMPAHLTPAEKTEMNDKAISAIVLCLGDKVLREV 75
           F LW+VKMR +L Q   + EAL+   +       AE+   + KA+S I L L + +L++V
Sbjct: 14  FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKV 73

Query: 76  ARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVES 115
            +E     +W KL+S+ M+K  T +  +K +L+ +++ ES
Sbjct: 74  LQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQES 113


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 38/123 (30%), Positives = 64/123 (51%), Gaps = 15/123 (12%)

Query: 8   IEKFTGSNDFGLWKVKMRI---ILIQQKCVEALKGKAQMPAHLTPAEKT----------- 53
           +EKF G  D+ +WK K+     IL     ++  +   +  + L  +++            
Sbjct: 8   VEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEAL 67

Query: 54  -EMNDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRM 112
            E   KA SAIVL + D+VLR++ +E+   +M   LD LYM+K+  +R   KQ+LY ++M
Sbjct: 68  EEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFKM 127

Query: 113 VES 115
            E+
Sbjct: 128 SEN 130


>UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 28/75 (37%), Positives = 42/75 (55%)

Query: 52  KTEMNDKAISAIVLCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYR 111
           + + ++KA+  I + +GDKVLR +         W  LD LY+ KS  +R  L+ ++Y YR
Sbjct: 37  RIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYR 96

Query: 112 MVESKTNNEATDGIQ 126
           M +SKT  E  D  Q
Sbjct: 97  MQDSKTLEENVDEFQ 111


>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
          Length = 556

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 37/106 (34%), Positives = 57/106 (52%), Gaps = 2/106 (1%)

Query: 18  GLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIVLCLGDKVLREVAR 77
           G  +++++ +L QQ   +AL+    MP  +   +  EM  +A + I L L D V+ +V  
Sbjct: 152 GSSQMRLKDLLAQQGISKALE--ETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMD 209

Query: 78  ETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATD 123
           E     +W+KL SLYM+KS T +  LKQQLY  +M E     +  D
Sbjct: 210 EKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVD 255


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.356    0.157    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,962,635
Number of Sequences: 2790947
Number of extensions: 15770847
Number of successful extensions: 70196
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 70023
Number of HSP's gapped (non-prelim): 168
length of query: 378
length of database: 848,049,833
effective HSP length: 129
effective length of query: 249
effective length of database: 488,017,670
effective search space: 121516399830
effective search space used: 121516399830
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 76 (33.9 bits)


Medicago: description of AC123575.7