BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.1 + phase: 0
(55 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6YTQ6 Helicase-like protein [Oryza sativa] 58 6e-08
UniRef100_Q6YSD5 Helicase-like protein [Oryza sativa] 58 6e-08
UniRef100_Q9LW42 Helicase-like protein [Arabidopsis thaliana] 58 6e-08
UniRef100_Q9LX60 Hypothetical protein F4M19_60 [Arabidopsis thal... 58 7e-08
UniRef100_Q8LRG5 Putative helicase [Oryza sativa] 58 7e-08
UniRef100_Q9C8B0 Hypothetical protein F10O5.11 [Arabidopsis thal... 57 2e-07
UniRef100_Q8RV60 Hypothetical protein At2g05640 [Arabidopsis tha... 57 2e-07
UniRef100_Q9C8V4 Hypothetical protein T22A15.15 [Arabidopsis tha... 57 2e-07
UniRef100_Q7XW15 OSJNBb0013O03.3 protein [Oryza sativa] 57 2e-07
UniRef100_O82606 T2L5.8 protein [Arabidopsis thaliana] 55 4e-07
UniRef100_Q9LTU4 Helicase-like protein [Arabidopsis thaliana] 55 4e-07
UniRef100_Q9SH75 Putative helicase [Arabidopsis thaliana] 55 5e-07
UniRef100_Q7XDN7 Hypothetical protein [Oryza sativa] 54 1e-06
UniRef100_Q94LS3 Putative helicase [Oryza sativa] 54 1e-06
UniRef100_Q9S9S6 F28J9.3 [Arabidopsis thaliana] 53 2e-06
UniRef100_Q5VR06 Helicase-like protein [Oryza sativa] 52 4e-06
UniRef100_Q94LS7 Putative helicase [Oryza sativa] 52 5e-06
UniRef100_Q9LIU0 Similar to Arabidopsis thaliana chromosome II B... 51 7e-06
UniRef100_Q84QR0 Helicase-like protein [Oryza sativa] 51 9e-06
UniRef100_Q9SY47 Hypothetical protein T5L23.19 [Arabidopsis thal... 51 9e-06
>UniRef100_Q6YTQ6 Helicase-like protein [Oryza sativa]
Length = 1430
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVAISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1337 VGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1387
>UniRef100_Q6YSD5 Helicase-like protein [Oryza sativa]
Length = 1516
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVAISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1423 VGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1473
>UniRef100_Q9LW42 Helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 58.2 bits (139), Expect = 6e-08
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+GGLK+LI D G + ++V+++E+ RN+
Sbjct: 1624 FSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1669
>UniRef100_Q9LX60 Hypothetical protein F4M19_60 [Arabidopsis thaliana]
Length = 1752
Score = 57.8 bits (138), Expect = 7e-08
Identities = 27/46 (58%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG+ ++V+++EV +N+
Sbjct: 1706 FSHGQLYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQNI 1751
>UniRef100_Q8LRG5 Putative helicase [Oryza sativa]
Length = 1453
Score = 57.8 bits (138), Expect = 7e-08
Identities = 27/51 (52%), Positives = 36/51 (69%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
+ V++ F+HGQLYVA+SR TSR GL+ILI DDDG + +V+Y EV
Sbjct: 1387 VGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1437
>UniRef100_Q9C8B0 Hypothetical protein F10O5.11 [Arabidopsis thaliana]
Length = 1678
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/46 (58%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG ++V+++EV +N+
Sbjct: 1632 FSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 1677
>UniRef100_Q8RV60 Hypothetical protein At2g05640 [Arabidopsis thaliana]
Length = 1308
Score = 56.6 bits (135), Expect = 2e-07
Identities = 26/46 (56%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV SR GLKILI D++G+ ++V+++EV +N+
Sbjct: 1256 FSHGQLYVAVSRVKSRRGLKILIIDEEGNRGKTTTNVVFKEVFQNL 1301
>UniRef100_Q9C8V4 Hypothetical protein T22A15.15 [Arabidopsis thaliana]
Length = 729
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/46 (58%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG ++V+++EV +N+
Sbjct: 683 FSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 728
>UniRef100_Q7XW15 OSJNBb0013O03.3 protein [Oryza sativa]
Length = 2052
Score = 56.6 bits (135), Expect = 2e-07
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ V++ F+HGQLYV ISR TSR GLKILI DD+ S+V+Y E+ R++
Sbjct: 1364 VGVYLKKPVFTHGQLYVVISRATSRSGLKILIEDDNESCASETSNVVYHEILRSL 1418
>UniRef100_O82606 T2L5.8 protein [Arabidopsis thaliana]
Length = 1073
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ +++ FSHGQLYVA+SRVTS+ GLK LI D DG ++V+++EV +N+
Sbjct: 1018 VGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1072
>UniRef100_Q9LTU4 Helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 55.5 bits (132), Expect = 4e-07
Identities = 26/46 (56%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D +G ++V+++EV +N+
Sbjct: 1383 FSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1428
>UniRef100_Q9SH75 Putative helicase [Arabidopsis thaliana]
Length = 1241
Score = 55.1 bits (131), Expect = 5e-07
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLK+LI D +G+ +V+++E+ +N+
Sbjct: 1194 FSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNL 1239
>UniRef100_Q7XDN7 Hypothetical protein [Oryza sativa]
Length = 1477
Score = 53.5 bits (127), Expect = 1e-06
Identities = 23/42 (54%), Positives = 33/42 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
F+HGQLYVA+SRVTSR GLKILI D++ + +++Y+E+
Sbjct: 1434 FTHGQLYVAVSRVTSRDGLKILIADEECPGEGMVKNIVYKEI 1475
>UniRef100_Q94LS3 Putative helicase [Oryza sativa]
Length = 1501
Score = 53.5 bits (127), Expect = 1e-06
Identities = 23/42 (54%), Positives = 33/42 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
F+HGQLYVA+SRVTSR GLKILI D++ + +++Y+E+
Sbjct: 1458 FTHGQLYVAVSRVTSRDGLKILIADEECPGEGMVKNIVYKEI 1499
>UniRef100_Q9S9S6 F28J9.3 [Arabidopsis thaliana]
Length = 436
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ +++H FSHGQLYVA+SRVT++ GLKILI D G ++V++++V +N+
Sbjct: 381 VGLYLHKPVFSHGQLYVALSRVTAKKGLKILILDKYGKLHKQTTNVVFKKVFQNI 435
>UniRef100_Q5VR06 Helicase-like protein [Oryza sativa]
Length = 1427
Score = 52.0 bits (123), Expect = 4e-06
Identities = 23/42 (54%), Positives = 32/42 (75%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
F+HGQLYVAISRV++ GLKILI ++DG +++YRE+
Sbjct: 1380 FTHGQLYVAISRVSNSKGLKILIENEDGTCATQTKNIVYREI 1421
>UniRef100_Q94LS7 Putative helicase [Oryza sativa]
Length = 1573
Score = 51.6 bits (122), Expect = 5e-06
Identities = 22/42 (52%), Positives = 32/42 (75%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
F+HGQLYVA+SRVTSR GLKI+I D + + +++Y+E+
Sbjct: 1530 FTHGQLYVAVSRVTSRDGLKIMIADKECPGEGMVKNIVYKEI 1571
>UniRef100_Q9LIU0 Similar to Arabidopsis thaliana chromosome II BAC T13P21 genomic
sequence [Oryza sativa]
Length = 1278
Score = 51.2 bits (121), Expect = 7e-06
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ V++ F+HGQLYVA+SR TSR GL+IL DD + +V+Y EV + V
Sbjct: 1189 VGVYLKKAVFTHGQLYVAVSRSTSRDGLRILTEGDDEACSSKTRNVVYHEVLQTV 1243
>UniRef100_Q84QR0 Helicase-like protein [Oryza sativa]
Length = 1330
Score = 50.8 bits (120), Expect = 9e-06
Identities = 23/42 (54%), Positives = 30/42 (70%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
FSHGQLYVA+SRVTS GL+ILIN + + +V+Y E+
Sbjct: 1280 FSHGQLYVALSRVTSPKGLRILINSNSSSNEHCTQNVVYHEI 1321
>UniRef100_Q9SY47 Hypothetical protein T5L23.19 [Arabidopsis thaliana]
Length = 570
Score = 50.8 bits (120), Expect = 9e-06
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+ LK+LI D G ++VI++E+ +N+
Sbjct: 524 FSHGQLYVAMSRVKSKARLKVLITDSKGKQKKETTNVIFKEIFQNL 569
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,421,251
Number of Sequences: 2790947
Number of extensions: 2492993
Number of successful extensions: 6988
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6917
Number of HSP's gapped (non-prelim): 72
length of query: 55
length of database: 848,049,833
effective HSP length: 31
effective length of query: 24
effective length of database: 761,530,476
effective search space: 18276731424
effective search space used: 18276731424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC122166.1