BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119408.1 + phase: 0 /pseudo
(600 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 136 2e-30
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 128 5e-28
UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa] 122 3e-26
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa] 122 3e-26
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa] 122 3e-26
UniRef100_Q84MQ3 Putative reverse transcriptase [Oryza sativa] 120 9e-26
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 119 3e-25
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa] 117 1e-24
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 115 3e-24
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 115 3e-24
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa] 115 5e-24
UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa] 114 1e-23
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 112 2e-23
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 111 5e-23
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 110 1e-22
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 110 1e-22
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 109 2e-22
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 109 2e-22
UniRef100_Q8VXT4 Reverse transcriptase [Brassica rapa subsp. ole... 109 3e-22
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 109 3e-22
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 136 bits (342), Expect = 2e-30
Identities = 62/125 (49%), Positives = 89/125 (70%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ANR+K ILP++ + QS FVPGRLI+DN LI +E HY+R R+ GY KLD++KA
Sbjct: 722 LANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKA 781
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+ D + +GF + +N IM C+ VT+ I +NG+ +E FSP+RG+RQGDP
Sbjct: 782 YDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLS 841
Query: 121 PLIFL 125
P +FL
Sbjct: 842 PYLFL 846
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 128 bits (321), Expect = 5e-28
Identities = 60/125 (48%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ANR+K LP+I ++FQS FVPGRLITD++L+ +E H IRK N N + +K+D+ KA
Sbjct: 537 LANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQH-NKNPFFALKIDMMKA 595
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W ++ L+ +GF + INT+M C+ V +++ ING+ T+P P RGIRQGDP
Sbjct: 596 YDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPIS 655
Query: 121 PLIFL 125
P +FL
Sbjct: 656 PYLFL 660
>UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa]
Length = 566
Score = 122 bits (306), Expect = 3e-26
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ANR+K ILP I D QS FVPGRLITDN LI +E H+++ R +GY IKLD++KA
Sbjct: 42 LANRLKSILPEIILDTQSAFVPGRLITDNVLIAYEATHFLQNKRNGKDGYAAIKLDMSKA 101
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W F+ L +GF IM C+ V + I +NG TE P RG+RQGDP
Sbjct: 102 YDRVEWPFLLHMLRRLGFDEKWNRLIMNCVTTVNYKIKVNGDYTEVIKPDRGLRQGDPLS 161
Query: 121 PLIFL 125
P +F+
Sbjct: 162 PYLFV 166
>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
Length = 1694
Score = 122 bits (306), Expect = 3e-26
Identities = 56/126 (44%), Positives = 82/126 (64%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ IL ++ + QS FVPGRLITDN+LI FE FH+I++ + N Y KLD++KA
Sbjct: 1135 LVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKA 1194
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD + W F+E + +GF + IM CI V +++ +NG F+P RG+RQGDP
Sbjct: 1195 YDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLS 1254
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1255 PFLFLF 1260
>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
Length = 1888
Score = 122 bits (306), Expect = 3e-26
Identities = 56/126 (44%), Positives = 82/126 (64%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ IL ++ + QS FVPGRLITDN+LI FE FH+I++ + N Y KLD++KA
Sbjct: 1092 LVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKA 1151
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD + W F+E + +GF + IM CI V +++ +NG F+P RG+RQGDP
Sbjct: 1152 YDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLS 1211
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1212 PFLFLF 1217
>UniRef100_Q84MQ3 Putative reverse transcriptase [Oryza sativa]
Length = 818
Score = 120 bits (302), Expect = 9e-26
Identities = 55/126 (43%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ +L ++ ++ QS FVPGR+ITDN+LI FE FHYI+K + + +KLD++KA
Sbjct: 42 LVNRLRPLLHDLISENQSAFVPGRMITDNALIAFECFHYIQKCNRESQMFCALKLDLSKA 101
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
+D + W+F++ L +GF IM C+ V +S+ NG EPF P RG+RQGDP
Sbjct: 102 FDRVDWDFLDGVLLRLGFAEKWRKWIMSCVTFVQYSVRFNGNLLEPFKPSRGLRQGDPLS 161
Query: 121 PLIFLY 126
P +FL+
Sbjct: 162 PYLFLF 167
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 119 bits (297), Expect = 3e-25
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K +LPN+ ++ QS FV GRLI+DN LI E FH +R + + ++ IK D++KA
Sbjct: 305 LCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKA 364
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNFIE L MGF I+ IM CI V + +LINGQP P+RG+RQGDP
Sbjct: 365 YDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLS 424
Query: 121 PLIFL 125
P +F+
Sbjct: 425 PYLFI 429
>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
Length = 1205
Score = 117 bits (292), Expect = 1e-24
Identities = 54/126 (42%), Positives = 80/126 (62%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ +L I ++ QS FVPGR+ITDN+L+ FE FH I K + + +KLD++KA
Sbjct: 509 LVNRLRPLLQEIISETQSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKA 568
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD + W F++ L +GF IM C+ V +S+ +NG EPF P RG+R+GDP
Sbjct: 569 YDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLN 628
Query: 121 PLIFLY 126
P +FL+
Sbjct: 629 PYLFLF 634
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 115 bits (289), Expect = 3e-24
Identities = 54/125 (43%), Positives = 80/125 (63%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
I NR+K +L I + QS FVP RLIT N L+ +E HY+ + + NG IKLD++KA
Sbjct: 869 IVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKA 928
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+ + +GF +N +M C+ VT+ I ING+ ++ PQRG+RQGDP
Sbjct: 929 YDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLS 988
Query: 121 PLIFL 125
P +F+
Sbjct: 989 PYLFI 993
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 115 bits (289), Expect = 3e-24
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K L ++ +D Q+ FVPG+ I+DN L+ E H ++ R +GYV +K DI+KA
Sbjct: 883 LIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKA 942
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+E + +GF + IM C+ V++ +LING P P RGIRQGDP
Sbjct: 943 YDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLS 1002
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1003 PYLFLF 1008
>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
Length = 1936
Score = 115 bits (287), Expect = 5e-24
Identities = 60/163 (36%), Positives = 95/163 (57%), Gaps = 4/163 (2%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ IL ++ + QS F+ GR+ITDN+L+ FE FH I+K + N+ KLD++KA
Sbjct: 1161 LVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKA 1220
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD + W F+E L +GF ++ IMLC+ V +S+ NG F+P RG+RQG+P
Sbjct: 1221 YDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLS 1280
Query: 121 PLIFLYYVLRFFLV*SQNVKMKV*FMVSPLPLMPQLYLIYFML 163
P +FL+ L+ + V ++PL + Q I ++L
Sbjct: 1281 PFLFLFVADGLSLLLKEKVAQN---SLTPLKICRQAPGISYLL 1320
>UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa]
Length = 1285
Score = 114 bits (284), Expect = 1e-23
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ IL ++ + QS F+ GR+ITDN+L+ FE FH I+K + N+ KLD++KA
Sbjct: 1073 LVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKA 1132
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD + W F+E L +GF ++ IM C+ V +S+ NG F+P RG+RQGDP
Sbjct: 1133 YDRVDWRFLELALNKLGFAHRWVSWIMSCVTTVRYSVKFNGTLLRSFAPTRGLRQGDPLS 1192
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1193 PFLFLF 1198
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 112 bits (281), Expect = 2e-23
Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR++ IL ++ + QS FV GR+ITDN+L+ FE FH ++K + N+ KLD++KA
Sbjct: 1255 LVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKA 1314
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDP-F 120
YD + W F+E + +GF +N IM C+ V + + NG + F+P RG+RQGDP
Sbjct: 1315 YDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLL 1374
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1375 PFLFLF 1380
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 111 bits (278), Expect = 5e-23
Identities = 53/125 (42%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ANR+K ILP++ ++ Q+ FV GRLI+DN LI E H + + ++ IK DI+KA
Sbjct: 521 MANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKA 580
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W F+E + +GF + I IM C++ V + +LING P P RG+RQGDP
Sbjct: 581 YDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLS 640
Query: 121 PLIFL 125
P +F+
Sbjct: 641 PYLFV 645
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 110 bits (275), Expect = 1e-22
Identities = 51/125 (40%), Positives = 77/125 (60%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K L I +D Q+ F+PGRL+ DN +I E H ++ + + Y+ +K D++KA
Sbjct: 883 LVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 942
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+E T+ GF I IM ++ V +S+L+NG P PQRGIRQGDP
Sbjct: 943 YDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS 1002
Query: 121 PLIFL 125
P +F+
Sbjct: 1003 PYLFI 1007
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 110 bits (275), Expect = 1e-22
Identities = 51/125 (40%), Positives = 77/125 (60%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K L I +D Q+ F+PGRL+ DN +I E H ++ + + Y+ +K D++KA
Sbjct: 903 LVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 962
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+E T+ GF I IM ++ V +S+L+NG P PQRGIRQGDP
Sbjct: 963 YDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS 1022
Query: 121 PLIFL 125
P +F+
Sbjct: 1023 PYLFI 1027
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 109 bits (273), Expect = 2e-22
Identities = 52/125 (41%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L +I +D Q+ F+PGR+I DN +I E H ++ + + Y+ +K D++KA
Sbjct: 142 MVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKA 201
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+E T+ GF I IM ++ V +S+LING P SP RGIRQGDP
Sbjct: 202 YDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLS 261
Query: 121 PLIFL 125
P +F+
Sbjct: 262 PYLFI 266
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 109 bits (273), Expect = 2e-22
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+++R+K +LP + ++ QS FV RLITDN LI E FH +R Y+ IK D++KA
Sbjct: 468 LSSRLKRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKA 527
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+ + MGF ++ I+ CI V++ IL+NG P P RGIRQGDP
Sbjct: 528 YDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPIS 587
Query: 121 PLIFL 125
P +F+
Sbjct: 588 PFLFI 592
>UniRef100_Q8VXT4 Reverse transcriptase [Brassica rapa subsp. oleifera]
Length = 139
Score = 109 bits (272), Expect = 3e-22
Identities = 52/118 (44%), Positives = 72/118 (60%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K +LP + ++ QS FV GRLI+DN L E FH +R + ++ IK D++KA
Sbjct: 20 LCQRLKRLLPQLVSETQSAFVSGRLISDNILFAQEMFHGLRTNNSCKEKFLAIKTDMSKA 79
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDP 119
YD ++W FIE L +GF + IM CI V + +LINGQP P RG+RQGDP
Sbjct: 80 YDRVEWPFIEAMLLKLGFAQRWVTRIMACITSVQYKVLINGQPKGHIVPNRGLRQGDP 137
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 109 bits (272), Expect = 3e-22
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L +I +D Q+ F+PGR+I DN +I E H ++ + + Y+ +K D++KA
Sbjct: 903 LVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKA 962
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+E T+ GF I IM ++ V +S+LING P +P RGIRQGDP
Sbjct: 963 YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 1022
Query: 121 PLIFL 125
P +F+
Sbjct: 1023 PYLFI 1027
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.344 0.154 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 927,244,991
Number of Sequences: 2790947
Number of extensions: 36432087
Number of successful extensions: 120866
Number of sequences better than 10.0: 544
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 120183
Number of HSP's gapped (non-prelim): 630
length of query: 600
length of database: 848,049,833
effective HSP length: 133
effective length of query: 467
effective length of database: 476,853,882
effective search space: 222690762894
effective search space used: 222690762894
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC119408.1