BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.2 + phase: 0 /pseudo
(91 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DIA2_MOUSE (O70566) Diaphanous protein homolog 2 (Diaphanous-rel... 33 0.097
E75C_DROME (P13055) Ecdysone-induced protein 75B isoform C (E75-C) 32 0.28
WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family memb... 32 0.37
UL33_RCMVM (O12000) G-protein coupled receptor homolog R33 30 1.1
SP5_MOUSE (Q9JHX2) Transcription factor Sp5 30 1.1
POL2_ARMVN (Q91HK4) RNA2 polyprotein (P2) [Contains: P2A protein... 30 1.1
HXD8_HUMAN (P13378) Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4) 30 1.1
CYSP_TRYBB (P14658) Cysteine proteinase precursor (EC 3.4.22.-) 30 1.1
ZAP3_MOUSE (Q9R0I7) Nuclear protein ZAP3 30 1.4
MLO8_ARATH (O22757) MLO-like protein 8 (AtMlo8) 30 1.4
L100_ADEP3 (Q9YTR7) Late 100 kDa protein 30 1.4
HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3 30 1.4
WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp) 29 1.8
TNF6_RAT (P36940) Tumor necrosis factor ligand superfamily membe... 29 1.8
SMN_HUMAN (Q16637) Survival motor neuron protein (Component of g... 29 1.8
SMN_CANFA (O02771) Survival motor neuron protein 29 1.8
KLF2_HUMAN (Q9Y5W3) Kruppel-like factor 2 (Lung kruppel-like fac... 29 1.8
DD17_HUMAN (Q92841) Probable RNA-dependent helicase p72 (DEAD-bo... 29 1.8
CUP_DROME (Q9VMA3) Cup protein (Oskar ribonucleoprotein complex ... 29 1.8
TRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associat... 29 2.4
>DIA2_MOUSE (O70566) Diaphanous protein homolog 2
(Diaphanous-related formin 2) (DRF2) (mDia3)
Length = 1098
Score = 33.5 bits (75), Expect = 0.097
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDV 78
PPPPPPP VFP +G +++ + D+
Sbjct: 600 PPPPPPPGGVFPLLSGPIELPYGMKQKKLYKPDI 633
Score = 27.7 bits (60), Expect = 5.3
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 44 PPPPPPPPSCVFPTFTGVV 62
PPPPPPPP P GVV
Sbjct: 560 PPPPPPPPP---PPLPGVV 575
>E75C_DROME (P13055) Ecdysone-induced protein 75B isoform C (E75-C)
Length = 1443
Score = 32.0 bits (71), Expect = 0.28
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 9/48 (18%)
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
PPPPPPPP VK + ++ +S S + NSS S+ ++ S
Sbjct: 401 PPPPPPPPK---------VKHASSSSSGNSSSSNTNNSSSSSNGEEPS 439
>WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member
2 (WASP-family protein member 2) (Verprolin homology
domain-containing protein 2)
Length = 497
Score = 31.6 bits (70), Expect = 0.37
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 44 PPPPPPPPSCVFPTFTG 60
PPPPPPPP P FTG
Sbjct: 392 PPPPPPPPGPPPPPFTG 408
Score = 27.3 bits (59), Expect = 6.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 44 PPPPPPPPSCVFPT 57
PPP PPPP+ +PT
Sbjct: 364 PPPLPPPPAADYPT 377
>UL33_RCMVM (O12000) G-protein coupled receptor homolog R33
Length = 387
Score = 30.0 bits (66), Expect = 1.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 44 PPPPPPPPSC 53
PPPPPPPP+C
Sbjct: 378 PPPPPPPPNC 387
Score = 26.9 bits (58), Expect = 9.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 42 RYPPPPPPPP 51
R PPPPPPPP
Sbjct: 374 RPPPPPPPPP 383
>SP5_MOUSE (Q9JHX2) Transcription factor Sp5
Length = 398
Score = 30.0 bits (66), Expect = 1.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 44 PPPPPPPPSC 53
PPPPPPPP+C
Sbjct: 166 PPPPPPPPTC 175
>POL2_ARMVN (Q91HK4) RNA2 polyprotein (P2) [Contains: P2A protein
(2A); Movement protein (2B-MP); Coat protein (2C-CP)]
Length = 1110
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 44 PPPPPPPPSCVFPTFTGVVK-VMENQNNTSSFSVDVE---NSSW 83
PPPPPPPP P+F ++ +E Q+ +F+++ N +W
Sbjct: 203 PPPPPPPPIQKPPSFEERLQAALERQSCARAFALETSLGLNMAW 246
>HXD8_HUMAN (P13378) Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
Length = 290
Score = 30.0 bits (66), Expect = 1.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 YPPPPPPPPSC 53
+PPPPPPPP C
Sbjct: 114 HPPPPPPPPPC 124
>CYSP_TRYBB (P14658) Cysteine proteinase precursor (EC 3.4.22.-)
Length = 450
Score = 30.0 bits (66), Expect = 1.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 44 PPPPPPPPSCVF 55
PPPPPPPPS F
Sbjct: 345 PPPPPPPPSATF 356
>ZAP3_MOUSE (Q9R0I7) Nuclear protein ZAP3
Length = 1386
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 44 PPPPPPPPSCVFPTFTGVVK 63
PPPPPPPP V + T VK
Sbjct: 793 PPPPPPPPPPVIKSKTSSVK 812
>MLO8_ARATH (O22757) MLO-like protein 8 (AtMlo8)
Length = 593
Score = 29.6 bits (65), Expect = 1.4
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 46 PPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESS 86
PP PPS F VVKV N+ NT S D E S E S
Sbjct: 544 PPKSPPS-----FELVVKVEPNKTNTGETSRDTETDSKEFS 579
>L100_ADEP3 (Q9YTR7) Late 100 kDa protein
Length = 838
Score = 29.6 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 7/48 (14%)
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
PPPPPPPP+ P+ ++ + + + D E++ SSS +S
Sbjct: 22 PPPPPPPPTSPPPS-------LQQRQQEPTETDDAEDTCSSSSSSSAS 62
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3
Length = 410
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 4/52 (7%)
Query: 44 PPPPPPPPSCVFPTFTG----VVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
PPPPPPPPS P T +N TS ++ + W S+ ++
Sbjct: 93 PPPPPPPPSVSPPQNTSSNSTQSSTSKNPTLTSQATISKQIFPWMKESRQNA 144
Score = 28.9 bits (63), Expect = 2.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 44 PPPPPPPPSCVFP 56
PPPPPPPP V P
Sbjct: 92 PPPPPPPPPSVSP 104
>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)
Length = 520
Score = 29.3 bits (64), Expect = 1.8
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 44 PPPPPPPPSC 53
PPPPPPPP C
Sbjct: 414 PPPPPPPPPC 423
>TNF6_RAT (P36940) Tumor necrosis factor ligand superfamily member
6 (FAS antigen ligand)
Length = 278
Score = 29.3 bits (64), Expect = 1.8
Identities = 11/15 (73%), Positives = 12/15 (79%)
Query: 42 RYPPPPPPPPSCVFP 56
R PPPPPPPPS + P
Sbjct: 43 RRPPPPPPPPSPLPP 57
>SMN_HUMAN (Q16637) Survival motor neuron protein (Component of gems
1) (Gemin1)
Length = 294
Score = 29.3 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 44 PPPPPPPP---SCVFPTF 58
PPPPPPPP SC P F
Sbjct: 219 PPPPPPPPHLLSCWLPPF 236
>SMN_CANFA (O02771) Survival motor neuron protein
Length = 287
Score = 29.3 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 44 PPPPPPPP---SCVFPTF 58
PPPPPPPP SC P F
Sbjct: 213 PPPPPPPPHFLSCWLPPF 230
>KLF2_HUMAN (Q9Y5W3) Kruppel-like factor 2 (Lung kruppel-like
factor)
Length = 355
Score = 29.3 bits (64), Expect = 1.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 44 PPPPPPPPSCVFP 56
PPPPPPPP+ +P
Sbjct: 64 PPPPPPPPAFYYP 76
>DD17_HUMAN (Q92841) Probable RNA-dependent helicase p72 (DEAD-box
protein p72) (DEAD-box protein 17)
Length = 650
Score = 29.3 bits (64), Expect = 1.8
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 42 RYPPPPPPPP 51
+YPPPPPPPP
Sbjct: 637 QYPPPPPPPP 646
Score = 27.7 bits (60), Expect = 5.3
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 44 PPPPPPPPS 52
PPPPPPPPS
Sbjct: 640 PPPPPPPPS 648
>CUP_DROME (Q9VMA3) Cup protein (Oskar ribonucleoprotein complex 147
kDa subunit)
Length = 1132
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/42 (30%), Positives = 18/42 (41%), Gaps = 3/42 (7%)
Query: 43 YPPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWE 84
YPPPPPPP P T + +Q + + + WE
Sbjct: 69 YPPPPPPPTPVQAPLATKATALNASQEHDDD---EANSEKWE 107
>TRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associated
protein (350/400 kDa PCAF-associated factor)
(PAF350/400) (STAF40) (Tra1 homolog)
Length = 3859
Score = 28.9 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQ 68
PPPPPPPP P V E Q
Sbjct: 506 PPPPPPPPPPATPVTPAPVPPFEKQ 530
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.309 0.126 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,761,210
Number of Sequences: 164201
Number of extensions: 298468
Number of successful extensions: 6220
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4745
Number of HSP's gapped (non-prelim): 809
length of query: 91
length of database: 59,974,054
effective HSP length: 67
effective length of query: 24
effective length of database: 48,972,587
effective search space: 1175342088
effective search space used: 1175342088
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC149600.2