BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149600.13 + phase: 0 /pseudo
         (232 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HOW_DROME (O01367) Held out wings protein (KH-domain protein KH9...   120  3e-27
GLD1_CAEEL (Q17339) Female germline-specific tumor suppressor gl...   118  1e-26
YKCA_CAEEL (P42083) Hypothetical protein B0280.11 in chromosome III    87  3e-17
SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) ...    86  6e-17
SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) ...    86  6e-17
GRP3_ARTSA (P13230) Glycine-rich protein GRP33                         70  6e-12
PIX1_XENLA (Q9W751) Pituitary homeobox 1 (X-PITX-1) (xPitx1)           35  0.15
YF33_METJA (Q58928) Hypothetical protein MJ1533                        34  0.26
TAXA_MOUSE (Q6PAM1) Alpha-taxilin                                      34  0.33
TAXA_HUMAN (P40222) Alpha-taxilin                                      34  0.33
YAJE_SCHPO (Q09911) Hypothetical protein C30D11.14c in chromosome I    33  0.75
HRB2_MOUSE (Q8BGA5) HIV-1 Rev binding protein 2 homolog                32  0.97
ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1     32  0.97
YCF9_YEAST (P25586) Hypothetical 37.2 kDa protein in CHA1-PRD1 i...    32  1.3
RGYR_ARCFU (O29238) Reverse gyrase [Includes: Helicase (EC 3.6.1...    32  1.3
HRB2_HUMAN (Q13601) HIV-1 Rev binding protein 2 (Rev interacting...    32  1.3
POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding ...    31  2.2
FUB1_MOUSE (Q91WJ8) Far upstream element binding protein 1 (FUSE...    31  2.2
FUB1_HUMAN (Q96AE4) Far upstream element binding protein 1 (FUSE...    31  2.2
MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)           31  2.8

>HOW_DROME (O01367) Held out wings protein (KH-domain protein KH93F)
           (Putative RNA-binding protein) (Muscle-specific protein)
           (Wings held out protein) (Struthio protein)
           (Quaking-related 93F)
          Length = 405

 Score =  120 bits (301), Expect = 3e-27
 Identities = 55/119 (46%), Positives = 84/119 (70%)

Query: 90  IPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHL 149
           +P   HP FNFVGR+LGPRG + K++E  TGC++ +RGKGS++D  KE+  RG+P +EHL
Sbjct: 143 VPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHL 202

Query: 150 NEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFRE 208
           ++ LH+LI  E   N   ++L QA   +++LL P  E +D  K++QL ELA++N ++R+
Sbjct: 203 SDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261


>GLD1_CAEEL (Q17339) Female germline-specific tumor suppressor gld-1
           (Defective in germ line development protein 1)
          Length = 463

 Score =  118 bits (296), Expect = 1e-26
 Identities = 53/121 (43%), Positives = 85/121 (69%)

Query: 87  RLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGF 146
           ++ +P + +P +NFVGR+LGPRG + K++E  TGC++ +RGKGS++D  KE   RG+  +
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANW 267

Query: 147 EHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSF 206
           EHL + LH+L++ E   N V ++L+ A E +++LL P  E  D  KR+QL ELA++N ++
Sbjct: 268 EHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTY 327

Query: 207 R 207
           R
Sbjct: 328 R 328


>YKCA_CAEEL (P42083) Hypothetical protein B0280.11 in chromosome III
          Length = 634

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 4/126 (3%)

Query: 83  KKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRG 142
           +K+ ++  P +     N VGRL+GPRG +++++E   GC++FIRGKG  KD  KEE LR 
Sbjct: 512 EKIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRE 571

Query: 143 RPGFEHLNEPLHILIEAEL-PVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAM 201
           R G+EHL EP+H++I            +L   +++++E L+  D      KR QL +LA+
Sbjct: 572 RVGWEHLKEPIHVMISVRSDSEEAASEKLSSIKKMLQEFLEHTDSE---LKRSQLMQLAV 628

Query: 202 LNSSFR 207
           +  + +
Sbjct: 629 IEGTLK 634


>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162)
           (Transcription factor ZFM1) (mZFM) (Zinc finger gene in
           MEN1 locus) (Mammalian branch point binding protein
           mBBP) (BBP) (CW17)
          Length = 653

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 20/165 (12%)

Query: 66  LNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFI 125
           LN D+ + PA       +   ++ IP D +P  NFVG L+GPRGN+LK +E     ++ I
Sbjct: 119 LNPDF-KPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMI 177

Query: 126 RGKGSIKDFDKEELLRGRPGFEHL---NEPLHILIEAELPVNVVDLRLRQAQEIIEELLK 182
           RGKGS+     EE   GR   + L   +EPLH L+ A    NV     ++A E I  +LK
Sbjct: 178 RGKGSV-----EEGKVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILK 227

Query: 183 ---PVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNE 224
                 E Q+  ++ QLRELA LN + RE+  ++   L P+ S+E
Sbjct: 228 QGIETPEDQNDLRKMQLRELARLNGTLREDDNRI---LRPWQSSE 269


>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162)
           (Transcription factor ZFM1) (Zinc finger gene in MEN1
           locus) (Mammalian branch point binding protein mBBP)
           (BBP)
          Length = 639

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 20/165 (12%)

Query: 66  LNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFI 125
           LN D+ + PA       +   ++ IP D +P  NFVG L+GPRGN+LK +E     ++ I
Sbjct: 119 LNPDF-KPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMI 177

Query: 126 RGKGSIKDFDKEELLRGRPGFEHL---NEPLHILIEAELPVNVVDLRLRQAQEIIEELLK 182
           RGKGS+K     E   GR   + L   +EPLH L+ A    NV     ++A E I  +LK
Sbjct: 178 RGKGSVK-----EGKVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILK 227

Query: 183 ---PVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNE 224
                 E Q+  ++ QLRELA LN + RE+  ++   L P+ S+E
Sbjct: 228 QGIETPEDQNDLRKMQLRELARLNGTLREDDNRI---LRPWQSSE 269


>GRP3_ARTSA (P13230) Glycine-rich protein GRP33
          Length = 308

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 67  NVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIR 126
           N D      + N   VK + R  +P D  P +NF+G+LLGP G+++K+++  T  ++ I 
Sbjct: 57  NTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISIL 116

Query: 127 GKGSIKDFDKEELLR--GRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPV 184
           G+GS++D +KEE LR  G   + HLNE LHI I +         R+  A   I++ + P 
Sbjct: 117 GRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITPE 176

Query: 185 DE 186
           ++
Sbjct: 177 ED 178


>PIX1_XENLA (Q9W751) Pituitary homeobox 1 (X-PITX-1) (xPitx1)
          Length = 305

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 12/106 (11%)

Query: 22  SGLMQNQGFSDYDRVQFG------STKPSLMPSLDTTSSFTGWNSLSHEGLNVDWQRAPA 75
           SGLMQ      YD +  G      +TK SL P+  +T SFT +NS+S       +    +
Sbjct: 154 SGLMQ-----PYDEMYAGYPYNNWATK-SLTPAPLSTKSFTFFNSMSPLSSQSMFSGPSS 207

Query: 76  ISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGC 121
           IS+  +   M    +P   + + N +  L    G+SL    ++TGC
Sbjct: 208 ISSMSMPSSMGHSAVPGMANSSLNNINNLNNISGSSLNSAMSSTGC 253


>YF33_METJA (Q58928) Hypothetical protein MJ1533
          Length = 642

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 23/118 (19%), Positives = 51/118 (42%), Gaps = 26/118 (22%)

Query: 100 FVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRP--------------- 144
           ++G ++G  G  + ++E   G ++ ++ K   ++ D E + R                  
Sbjct: 521 YIGAIIGKGGKEISKLEDMLGLKISVKEKEKEEEKDMERIYRKYEYVNELESTRIYETDK 580

Query: 145 ------GFEHLNEPLHILIEAELPVNVV-----DLRLRQAQEIIEELLKPVDESQDIY 191
                 G +   E + I I+ +L   V       +R+ +  ++ +E+L+ +DE +DIY
Sbjct: 581 YVVVDVGEDFAGENIRIYIDGKLLTTVTVRNDGTVRINKKTKVGKEILEAIDEGRDIY 638


>TAXA_MOUSE (Q6PAM1) Alpha-taxilin
          Length = 554

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 22/103 (21%)

Query: 147 EHLNEPLHILIEAELPVNVVDLRLRQAQEIIEE-----------LLKPVDESQ---DIYK 192
           EH+++   +    +L   +VD +L+QAQE+++E           LLK   ESQ   ++ K
Sbjct: 321 EHIDK---VFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMK 377

Query: 193 RQQL---RELAMLNSSFREESPQLSGSLSPFTS--NEMIKRAK 230
           +Q+    ++LA+    F E    LS S   FT+   EM K  K
Sbjct: 378 QQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTK 420


>TAXA_HUMAN (P40222) Alpha-taxilin
          Length = 546

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 22/103 (21%)

Query: 147 EHLNEPLHILIEAELPVNVVDLRLRQAQEIIEE-----------LLKPVDESQ---DIYK 192
           EH+++   +    +L   +VD +L+QAQE+++E           LLK   ESQ   ++ K
Sbjct: 321 EHIDK---VFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKDFLLKEAVESQRMCELMK 377

Query: 193 RQQL---RELAMLNSSFREESPQLSGSLSPFTS--NEMIKRAK 230
           +Q+    ++LA+    F E    LS S   FT+   EM K  K
Sbjct: 378 QQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTK 420


>YAJE_SCHPO (Q09911) Hypothetical protein C30D11.14c in chromosome I
          Length = 534

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 25/97 (25%), Positives = 48/97 (48%), Gaps = 13/97 (13%)

Query: 98  FNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILI 157
           F+    ++GP+G  +K ++  T  RV I+G+GS   F +    R        +EP+H+ I
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGSA--FIEPSTNR------ESDEPIHLCI 354

Query: 158 EAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQ 194
            +  P       +++A+ + E+L+  V +    +K Q
Sbjct: 355 MSHDP-----NAIQRAKVLCEDLIASVHQQYKAWKSQ 386


>HRB2_MOUSE (Q8BGA5) HIV-1 Rev binding protein 2 homolog
          Length = 380

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 103 RLLGPRGNSLKRVEATTGCRVFIRG 127
           RL+GP+G++LK +E  T C V ++G
Sbjct: 162 RLIGPKGSTLKALELLTNCYVMVQG 186


>ECR1_METTH (O26780) Probable exosome complex RNA-binding protein 1
          Length = 311

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 101 VGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAE 160
           V RL+G RG+ +  V+  T C + +   G +        ++G P  E + E + ++I+ E
Sbjct: 151 VPRLIGKRGSMINMVKEKTHCDIVVGQNGVV-------WIKGEPDMERIAEKVVLMIDRE 203

Query: 161 LPVNVVDLRLRQ 172
              + +  R+R+
Sbjct: 204 AHTSGLTDRVRE 215


>YCF9_YEAST (P25586) Hypothetical 37.2 kDa protein in CHA1-PRD1
           intergenic region
          Length = 316

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 103 RLLGPRGNSLKRVEATTGCRVFIRG 127
           RL+GP GN+LK +E  T C + ++G
Sbjct: 144 RLVGPNGNTLKALELLTKCYILVQG 168


>RGYR_ARCFU (O29238) Reverse gyrase [Includes: Helicase (EC
           3.6.1.-); Topoisomerase (EC 5.99.1.3)]
          Length = 1054

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 30/108 (27%), Positives = 50/108 (45%), Gaps = 6/108 (5%)

Query: 122 RVFIRGKGSIKDFDKEELLRGRPGF-EHLNEPLHILIEAELPVNVVDLRLRQAQEI-IEE 179
           R +I+G G         L +G     E  +E L   IE      + D+  +   E+  E+
Sbjct: 427 RTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER---AKLYDIEFKSIDEVDFEK 483

Query: 180 LLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIK 227
           L + +DES+D Y+R+Q  +L +  + F  ESP  +  +S F     +K
Sbjct: 484 LSRELDESRDRYRRRQEFDL-IKPALFIVESPTKARQISRFFGKPSVK 530


>HRB2_HUMAN (Q13601) HIV-1 Rev binding protein 2 (Rev interacting
           protein 1) (Rip-1)
          Length = 381

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 103 RLLGPRGNSLKRVEATTGCRVFIRG 127
           RL+GP+G++LK +E  T C + ++G
Sbjct: 163 RLIGPKGSTLKALELLTNCYIMVQG 187


>POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding
           protein 2)
          Length = 662

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/97 (25%), Positives = 44/97 (44%), Gaps = 2/97 (2%)

Query: 135 DKEELLRGRPGFE-HLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKR 193
           ++ E +  R  FE H  E L  L E E+   V  L   +  + + +L   VD+ ++ +K 
Sbjct: 558 ERREKMEARQKFEQHFGEGLVGLSEEEIIAYVTMLSQEEEAKRMVQLSMDVDKIEEDFKE 617

Query: 194 QQLRELAMLNS-SFREESPQLSGSLSPFTSNEMIKRA 229
              +  + LN+ S   E PQ   +++     E I+ A
Sbjct: 618 NDEQATSSLNALSSNHEPPQEQANVAELNEQEQIELA 654


>FUB1_MOUSE (Q91WJ8) Far upstream element binding protein 1 (FUSE
           binding protein 1) (FBP)
          Length = 651

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 31/141 (21%), Positives = 56/141 (38%), Gaps = 40/141 (28%)

Query: 101 VGRLLGPRGNSLKRVEATTGCRVFIRGKG------------------SIKDFDKEELLRG 142
           VG ++G  G  + R++  +GC++ I                      S K    + + +G
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 167

Query: 143 RP--GFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELL------------------- 181
           RP  GF H + P + + E  +P +   L + +  E I++L                    
Sbjct: 168 RPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA 227

Query: 182 -KPVDESQDIYKRQQLRELAM 201
            KP+  + D YK QQ +E+ +
Sbjct: 228 DKPLRITGDPYKVQQAKEMVL 248


>FUB1_HUMAN (Q96AE4) Far upstream element binding protein 1 (FUSE
           binding protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 31/141 (21%), Positives = 56/141 (38%), Gaps = 40/141 (28%)

Query: 101 VGRLLGPRGNSLKRVEATTGCRVFIRGKG------------------SIKDFDKEELLRG 142
           VG ++G  G  + R++  +GC++ I                      S K    + + +G
Sbjct: 111 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 170

Query: 143 RP--GFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELL------------------- 181
           RP  GF H + P + + E  +P +   L + +  E I++L                    
Sbjct: 171 RPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA 230

Query: 182 -KPVDESQDIYKRQQLRELAM 201
            KP+  + D YK QQ +E+ +
Sbjct: 231 DKPLRITGDPYKVQQAKEMVL 251


>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)
          Length = 539

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/72 (27%), Positives = 39/72 (53%), Gaps = 6/72 (8%)

Query: 149 LNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQ------DIYKRQQLRELAML 202
           LNE L  L   E  V V++ ++++A+E I+EL +  +E Q      +  K+ + +++  L
Sbjct: 122 LNEALEKLDGEEHSVLVLEEKIQEAEEKIDELTEKTEELQSNISRLETEKQNRDKQIDTL 181

Query: 203 NSSFREESPQLS 214
           N   R++   +S
Sbjct: 182 NEDIRKQDETIS 193


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,479,956
Number of Sequences: 164201
Number of extensions: 1204769
Number of successful extensions: 3019
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2997
Number of HSP's gapped (non-prelim): 33
length of query: 232
length of database: 59,974,054
effective HSP length: 107
effective length of query: 125
effective length of database: 42,404,547
effective search space: 5300568375
effective search space used: 5300568375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)