BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149577.7 - phase: 0
(173 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FX42_HUMAN (Q6P3S6) F-box only protein 42 40 0.003
FX42_MOUSE (Q6PDJ6) F-box only protein 42 39 0.006
FXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucin... 39 0.008
YB08_YEAST (P38285) Hypothetical 62.7 kDa protein in CNS1-CDC28 ... 34 0.15
YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.... 34 0.19
YAVK_CAEEL (Q17851) Hypothetical protein C09B9.3 in chromosome IV 32 0.55
FX39_HUMAN (Q8N4B4) F-box only protein 39 32 0.94
SKP2_MOUSE (Q9Z0Z3) S-phase kinase-associated protein 2 (F-box p... 30 2.7
FXLL_MOUSE (Q8BFZ4) F-box/LRR-repeat protein 21 (F-box and leuci... 30 2.7
FLR3_HUMAN (Q9NZU0) Leucine-rich repeat transmembrane protein FL... 30 2.7
SYH_PYRHO (O58028) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 6.1
YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III 28 8.0
PAX6_RAT (P63016) Paired box protein Pax-6 (Oculorhombin) 28 8.0
LR29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29 (F... 28 8.0
FXLG_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leuci... 28 8.0
FXLE_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and leuci... 28 8.0
FXLE_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and leuci... 28 8.0
>FX42_HUMAN (Q6P3S6) F-box only protein 42
Length = 717
Score = 39.7 bits (91), Expect = 0.003
Identities = 15/43 (34%), Positives = 27/43 (61%)
Query: 13 QGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWY 55
+ E+ + S S+ P+EVLE +L + ++ + +LVCK+WY
Sbjct: 37 EAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWY 79
>FX42_MOUSE (Q6PDJ6) F-box only protein 42
Length = 717
Score = 38.9 bits (89), Expect = 0.006
Identities = 15/41 (36%), Positives = 26/41 (62%)
Query: 15 EKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWY 55
E+ + S S+ P+EVLE +L + ++ + +LVCK+WY
Sbjct: 39 EETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWY 79
>FXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and
leucine-rich repeat protein 7) (F-box protein FBL6/FBL7)
Length = 491
Score = 38.5 bits (88), Expect = 0.008
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 134 VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
VSD LE LA + N K LSL SC+ + GL VA NC
Sbjct: 415 VSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANC 453
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 134 VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
++D +E+LA + K+L + C S GL +A NC
Sbjct: 389 ITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNC 427
>YB08_YEAST (P38285) Hypothetical 62.7 kDa protein in CNS1-CDC28
intergenic region
Length = 549
Score = 34.3 bits (77), Expect = 0.15
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 134 VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
+ D L L+ S PN K L L +CD S G+ +A NC
Sbjct: 349 IDDNFLLRLSQSIPNLKHLVLRACDNVSDSGVVCIALNC 387
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7
in chromosome III
Length = 461
Score = 33.9 bits (76), Expect = 0.19
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 48/185 (25%)
Query: 23 NSDFPDEVLERVLGMMKSRKDRSSVSLVCKEW----YNAERWSRRNVFI--GNCYAVSPE 76
N P EVL +V + ++ S VC+ W + W R ++F + E
Sbjct: 57 NRVLPKEVLLKVFSFLDTKALCRSAQ-VCRSWSILALDGSNWQRVDLFTFQRDVKTAVVE 115
Query: 77 ILTRRFPN-IRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRM--- 132
L RR ++ +++KG D S L F + P LE L L R
Sbjct: 116 NLARRCGGFLKELSLKGCENVHD-------------SALRTFTSRCPNLEHLSLYRCKRV 162
Query: 133 ------------------------AVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAV 168
+++D +++++ PN L++ CD G+ +
Sbjct: 163 TDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQII 222
Query: 169 ATNCK 173
+NCK
Sbjct: 223 LSNCK 227
>YAVK_CAEEL (Q17851) Hypothetical protein C09B9.3 in chromosome IV
Length = 884
Score = 32.3 bits (72), Expect = 0.55
Identities = 31/108 (28%), Positives = 47/108 (42%), Gaps = 26/108 (24%)
Query: 7 KRKKESQGEKNNNMDSNSD-----FPDEV--------LERVLGMMKSRKDRSSVSLVCKE 53
K KK+S GE+N + S ++ PD V LE+ L K ++R + + E
Sbjct: 479 KNKKKSSGEQNKTVKSGAENMKILKPDAVKYVEKQKELEK-LNAAKKEEERMELEKLDAE 537
Query: 54 WYNAERWSRRNVFIGNCYAVSPEILT---------RRFPNIRSVTMKG 92
N R +RR + Y V+ ++L RRFPN S+ G
Sbjct: 538 RKNKLRMARRTII---RYLVASQVLVLRTISMRTLRRFPNYTSIVAAG 582
>FX39_HUMAN (Q8N4B4) F-box only protein 39
Length = 442
Score = 31.6 bits (70), Expect = 0.94
Identities = 18/43 (41%), Positives = 24/43 (54%), Gaps = 5/43 (11%)
Query: 27 PDEVLERVLGMMKSRKDRSSVSLVCKEW----YNAERWSRRNV 65
PD L RV + R DRS +LVC++W Y+AE W R +
Sbjct: 20 PDLCLCRVFWWLGDR-DRSRAALVCRKWNQMMYSAELWRYRTI 61
>SKP2_MOUSE (Q9Z0Z3) S-phase kinase-associated protein 2 (F-box
protein Skp2) (Cyclin A/CDK2-associated protein p45)
(F-box/WD-40 protein 1) (FWD1)
Length = 424
Score = 30.0 bits (66), Expect = 2.7
Identities = 40/158 (25%), Positives = 68/158 (42%), Gaps = 15/158 (9%)
Query: 27 PDEVLERVLGMMKSRKDRSSVSLVCKEWY----NAERWSRRNVFIGNCYA-VSPEILTR- 80
PDE+L + + + VS VCK WY + W ++ N + V+ +L+R
Sbjct: 101 PDELLLGIFSCL-CLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRG 159
Query: 81 ----RFPNIRSVTMKGKPRFSDFNLVPANWGADIH--SWLVVFADKYPFLEELRLKRMAV 134
R P G+ FS F + + + S L + L+ L L+ + +
Sbjct: 160 VVAFRCPRSFMEQPLGES-FSSFRVQHMDLSNSVINVSNLHKILSECSKLQNLSLEGLQL 218
Query: 135 SDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
SD ++ LA + N L+L C GFS +A + ++C
Sbjct: 219 SDPIVKTLAQN-ENLVRLNLCGCSGFSESAVATLLSSC 255
>FXLL_MOUSE (Q8BFZ4) F-box/LRR-repeat protein 21 (F-box and
leucine-rich repeat protein 21) (F-box/LRR-repeat
protein 3B) (F-box and leucine-rich repeat protein 3B)
Length = 434
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 124 LEELRLKRMAVSDESLEFL-AFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
L ++++ V D SL+ L A + + L + SC S+DG+ VA +C+
Sbjct: 180 LSSIKIEDTPVDDPSLKILVANNSDTLRLLKMSSCPHVSSDGILCVADHCQ 230
>FLR3_HUMAN (Q9NZU0) Leucine-rich repeat transmembrane protein FLRT3
precursor (Fibronectin-like domain-containing
leucine-rich transmembrane protein 3) (UNQ856/PRO1865)
Length = 649
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 120 KYPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFST 162
K P+LEEL L +VS S+E AF N+ L LS + ST
Sbjct: 126 KIPYLEELHLDDNSVSAVSIEEGAFRDSNYLRLLFLSRNHLST 168
>SYH_PYRHO (O58028) Histidyl-tRNA synthetase (EC 6.1.1.21)
(Histidine--tRNA ligase) (HisRS)
Length = 431
Score = 28.9 bits (63), Expect = 6.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 11 ESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCK-----EWYNAERWSR 62
ES+ EK + PD VL + KS+K + +S + K EWY + W R
Sbjct: 205 ESEIEKVLELVEIKGRPDNVLPLAEELFKSKKAKEEISKLYKLTDLLEWYGVKDWIR 261
>YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III
Length = 724
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 MVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMK--SRKDR 44
++E K+KK+ + +KN D+NS+ E+ E+ K S++DR
Sbjct: 642 ILEKKKKKKDKKKKNKRSDNNSESEGEIREKEKKKKKKHSKEDR 685
>PAX6_RAT (P63016) Paired box protein Pax-6 (Oculorhombin)
Length = 422
Score = 28.5 bits (62), Expect = 8.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 8 RKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSS 46
+++E QGE N++ SN + DE R+ K +++R+S
Sbjct: 178 QQQEGQGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTS 216
>LR29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29
(F-box/LRR-repeat protein 9) (F-box and leucine-rich
repeat protein 9) (F-box protein FBL9)
Length = 223
Score = 28.5 bits (62), Expect = 8.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 114 LVVFADKYPFLEELRLKRMA-VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
LV A P LE L L + +SD+ A S+P + L+L SC L A+ C
Sbjct: 118 LVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQAC 177
Query: 173 K 173
+
Sbjct: 178 R 178
>FXLG_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and
leucine-rich repeat protein 16) (cg14134)
Length = 479
Score = 28.5 bits (62), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 134 VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
+++ + + S PN ALSL C + DG+ VA N +
Sbjct: 307 ITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLR 346
>FXLE_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and
leucine-rich repeat protein 14)
Length = 400
Score = 28.5 bits (62), Expect = 8.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 84 NIRSVTMKGKPRFSDFNLVPANWGADIHSWL-VVFADKYPFLEELRLKRMAVSDESLEFL 142
++RS+ ++ SD ++ G+ S L V F DK V D+SL ++
Sbjct: 254 SLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDK-------------VGDQSLAYI 300
Query: 143 AFSFPNFKALSLLSCDGFSTDGL 165
A K+LSL SC S DG+
Sbjct: 301 AQGLDGLKSLSLCSCH-ISDDGI 322
>FXLE_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and
leucine-rich repeat protein 14)
Length = 418
Score = 28.5 bits (62), Expect = 8.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 84 NIRSVTMKGKPRFSDFNLVPANWGADIHSWL-VVFADKYPFLEELRLKRMAVSDESLEFL 142
++RS+ ++ SD ++ G+ S L V F DK V D+SL ++
Sbjct: 254 SLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDK-------------VGDQSLAYI 300
Query: 143 AFSFPNFKALSLLSCDGFSTDGL 165
A K+LSL SC S DG+
Sbjct: 301 AQGLDGLKSLSLCSCH-ISDDGI 322
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,439,639
Number of Sequences: 164201
Number of extensions: 800289
Number of successful extensions: 1808
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 22
length of query: 173
length of database: 59,974,054
effective HSP length: 103
effective length of query: 70
effective length of database: 43,061,351
effective search space: 3014294570
effective search space used: 3014294570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC149577.7