BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149574.9 + phase: 2 /pseudo
(88 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) ... 36 0.020
DA2D_PHYBI (P21850) [D-Ala(2)] deltorphins I and II precursor 35 0.026
YHU6_YEAST (P38845) Hypothetical 51.1 kDa protein in DCD1-MRPL6 ... 35 0.034
NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilamen... 35 0.044
UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream b... 34 0.057
UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream b... 33 0.13
HMG2_CHICK (P26584) High mobility group protein 2 (HMG-2) 33 0.13
UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream b... 33 0.17
DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx) 33 0.17
CRT1_BOVIN (P52193) Calreticulin, brain isoform 1 precursor (CRP... 33 0.17
SP10_GORGO (Q9N1Q6) Nuclear autoantigen Sp-100 (Speckled 100 kDa... 32 0.22
NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer... 32 0.22
ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (X-linked hel... 32 0.22
UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream bin... 32 0.28
Y056_HUMAN (P42695) Hypothetical protein KIAA0056 (Fragment) 32 0.37
HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High ... 32 0.37
ZBT9_HUMAN (Q96C00) Zinc finger and BTB domain containing protein 9 31 0.49
SLUG_MOUSE (P97469) Zinc finger protein SLUG (Neural crest trans... 31 0.49
CRTC_RABIT (P15253) Calreticulin precursor (CRP55) (Calregulin) ... 31 0.49
CRT2_BOVIN (P42918) Calreticulin, brain isoform 2 precursor (CRP... 31 0.49
>DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)
(DAZ-interacting protein 3 homolog)
Length = 1204
Score = 35.8 bits (81), Expect = 0.020
Identities = 18/61 (29%), Positives = 35/61 (56%), Gaps = 1/61 (1%)
Query: 22 KKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK-EDDEEVDDEEEYQGECTACGE 80
K +++EK + +N++ S + S+ + K ++ A E D+++D+EEE + C C E
Sbjct: 1090 KSESEEKSAQDGNNASPSHTASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHE 1149
Query: 81 N 81
N
Sbjct: 1150 N 1150
>DA2D_PHYBI (P21850) [D-Ala(2)] deltorphins I and II precursor
Length = 227
Score = 35.4 bits (80), Expect = 0.026
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Query: 14 FEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKAR-------GSELAKYSKPPAKEDDEEVD 66
FEVV G AKK +E + + + GS+ + G E K + P +E++ E +
Sbjct: 109 FEVVGGEAKKMKREPEEENENEEENHEEGSEMKRYAFDVVGGEAKKMKREPEEENENEEE 168
Query: 67 DEEE 70
+ EE
Sbjct: 169 NHEE 172
Score = 34.3 bits (77), Expect = 0.057
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 14 FEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKAR-------GSELAKYSKPPAKEDDEEVD 66
F+VV G AKK +E + + + GS+ + G E K + P +E++ E +
Sbjct: 145 FDVVGGEAKKMKREPEEENENEEENHEEGSEMKRYAFDVVGGEAKKMKREPEEENENEEE 204
Query: 67 DEEE 70
+ EE
Sbjct: 205 NHEE 208
>YHU6_YEAST (P38845) Hypothetical 51.1 kDa protein in DCD1-MRPL6
intergenic region
Length = 465
Score = 35.0 bits (79), Expect = 0.034
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 SSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGECTACGENYVSASDE 88
S+ N K+K +K R S+L K S K+ +E +DD EE G E+ S E
Sbjct: 124 STSNRKKNKRNNKKRRSKLKKKSTKNNKKSNESLDDNEEEDGVTGTTTEDVTGTSRE 180
Score = 26.9 bits (58), Expect = 9.2
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 17 VTGSAKKQTKEKPSVSSHNSNKSKS--GSK-ARGSELAKYSKPPAKE 60
+T + ++ P+VS K K GSK + SE +K KP AKE
Sbjct: 379 LTDEQTAEGRKSPAVSEEKEKKKKQEKGSKEVKRSETSKEKKPSAKE 425
>NFL_COTJA (Q02916) Neurofilament triplet L protein (Neurofilament
light polypeptide) (NF-L)
Length = 555
Score = 34.7 bits (78), Expect = 0.044
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 13 IFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQ 72
I E + + + K P+ K + + G E A+ + AKE+ EE + EE +
Sbjct: 455 IEETIEAAKAGEAKAAPAEEGEEEEKEEGEEEEAGGEEAEEEEEGAKEESEEGKEGEEEE 514
Query: 73 GECTAC--GENYVSASDE 88
GE TA GE ++E
Sbjct: 515 GEETAAEDGEESQETAEE 532
Score = 28.1 bits (61), Expect = 4.1
Identities = 15/61 (24%), Positives = 27/61 (43%)
Query: 23 KQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGECTACGENY 82
++ +E+ + S + K G + G E A ++E EE +EE+ + E E
Sbjct: 491 EEAEEEEEGAKEESEEGKEGEEEEGEETAAEDGEESQETAEETGEEEKEEKEAAGKEETE 550
Query: 83 V 83
V
Sbjct: 551 V 551
>UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream
binding factor-2) (UBF-2) (xUBF-2)
Length = 701
Score = 34.3 bits (77), Expect = 0.057
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 25 TKEKPSVSSHNSNKSKSGSKARG----SELAKYSKPPAKEDDEEVDDEE-------EYQG 73
T+++ + N+NK KS +K + S+L SK EDDE+ +DEE E +
Sbjct: 579 TQDRAAYKEQNTNKRKSTTKIQAPSSKSKLVIQSKSDDDEDDEDDEDEEDDDDDDDEDKE 638
Query: 74 ECTACGENYVSASDE 88
+ + G++ S+SDE
Sbjct: 639 DSSEDGDSSDSSSDE 653
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 33.1 bits (74), Expect = 0.13
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 26 KEKPSVSSHNSNKSKSGSKARG-----SELAKYSKPPAKEDDEEVDDEEEYQGE 74
+++ + + SNK KS +K RG S SK ++EDDEE +D+E+ E
Sbjct: 640 QDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEE 693
>HMG2_CHICK (P26584) High mobility group protein 2 (HMG-2)
Length = 206
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/52 (32%), Positives = 26/52 (49%)
Query: 23 KQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
K+ EK + +KS +G K G K +E++EE +DEEE + E
Sbjct: 151 KEKYEKDIAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEEEEEDEEEEEEE 202
>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 765
Score = 32.7 bits (73), Expect = 0.17
Identities = 20/67 (29%), Positives = 36/67 (52%), Gaps = 5/67 (7%)
Query: 26 KEKPSVSSHNSNKSKSGSKARG-----SELAKYSKPPAKEDDEEVDDEEEYQGECTACGE 80
+++ + + SNK K+ +K RG S SK ++EDD+E ++++E + E E
Sbjct: 640 QDRAAYKEYISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEEDDE 699
Query: 81 NYVSASD 87
N S+ D
Sbjct: 700 NGDSSED 706
>DAXX_RAT (Q8VIB2) Death domain-associated protein 6 (Daxx)
Length = 731
Score = 32.7 bits (73), Expect = 0.17
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 21 AKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
A Q+ + P SS +S + SG ++ ++ +EDDEE DDEEE + E
Sbjct: 398 ATSQSSDLPKASS-DSGEGPSGVASQEDPTTPKAETEDEEDDEESDDEEEEEEE 450
>CRT1_BOVIN (P52193) Calreticulin, brain isoform 1 precursor (CRP55)
(Calregulin) (HACBP)
Length = 417
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 4/66 (6%)
Query: 17 VTGSAKKQTKEKPSVSS--HNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
VT +A+KQ K+K H + K G + E K ED+E+ D++EE + E
Sbjct: 349 VTKAAEKQMKDKQDEEQRLHEEEEEKKGKEEE--EADKDDDEDKDEDEEDEDEKEEEEEE 406
Query: 75 CTACGE 80
A G+
Sbjct: 407 DAAAGQ 412
>SP10_GORGO (Q9N1Q6) Nuclear autoantigen Sp-100 (Speckled 100 kDa)
(Nuclear dot-associated Sp100 protein) (Fragment)
Length = 225
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 20 SAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
+AK + K K ++++ + + +K R + K K +E+DEE + EEE + E
Sbjct: 171 AAKLKEKYKKDIAAYRAKGMPNSAKKRAVKAEKSKKKREEEEDEEDEQEEENEEE 225
>NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer
cells cyclophilin-related protein) (NK-TR protein)
Length = 1462
Score = 32.3 bits (72), Expect = 0.22
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 29 PSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEE 69
P VS + SKSG K +G +Y PP E DD++
Sbjct: 317 PIVSDQKPSVSKSGRKIKGRGTIRYHTPPRSRSCSESDDDD 357
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Query: 19 GSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 59
GS++ +T K S SH+ ++SKS S ++ + SK P K
Sbjct: 531 GSSRSRTASKSS--SHSRSRSKSRSSSKSGHRKRASKSPRK 569
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (X-linked
helicase II) (X-linked nuclear protein) (XNP)
Length = 2492
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/53 (33%), Positives = 25/53 (46%)
Query: 20 SAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQ 72
S +K TKE + + K++ G K E SK AK ++VD E YQ
Sbjct: 424 SKEKNTKEHKVIEAKFETKARKGEKPCALEKKDISKSEAKLSRKQVDSEHMYQ 476
Score = 26.9 bits (58), Expect = 9.2
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 22 KKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
+K+ + + V +S+++KS S+ E K +E++EE ++EEE + +
Sbjct: 1421 QKKKRRRIKVQEDSSSENKSNSEEEEEE-----KEEEEEEEEEEEEEEEDEND 1468
>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 764
Score = 32.0 bits (71), Expect = 0.28
Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 5/54 (9%)
Query: 26 KEKPSVSSHNSNKSKSGSKARG-----SELAKYSKPPAKEDDEEVDDEEEYQGE 74
+++ + + SNK K+ +K RG S SK ++EDD+E DD+++ + E
Sbjct: 640 QDRAAYKEYISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDDEEDDDDDDEEE 693
>Y056_HUMAN (P42695) Hypothetical protein KIAA0056 (Fragment)
Length = 1507
Score = 31.6 bits (70), Expect = 0.37
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 11 PTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDE--EVDDE 68
P +F+ + KK ++ +++ + S+A K KPP +ED E E+ +E
Sbjct: 146 PVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRGKPPRREDIEMDEIIEE 205
Query: 69 EEYQGEC 75
+E + C
Sbjct: 206 QEDENIC 212
>HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 31.6 bits (70), Expect = 0.37
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 17 VTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
VT +AK + K + V+ + S G+K K + +E++EE ++EEE + E
Sbjct: 142 VTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEEEEEDE 199
>ZBT9_HUMAN (Q96C00) Zinc finger and BTB domain containing protein 9
Length = 473
Score = 31.2 bits (69), Expect = 0.49
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Query: 20 SAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEV-DDEEEYQGECT 76
S+ QT + S S+ + ++S GSEL + + +E++EE DD++E QG T
Sbjct: 173 SSPFQTPVQSSASTESPASTESPVGGEGSELGEVLQIQVEEEEEEEEDDDDEDQGSAT 230
>SLUG_MOUSE (P97469) Zinc finger protein SLUG (Neural crest
transcription factor Slug) (Snail homolog 2)
Length = 269
Score = 31.2 bits (69), Expect = 0.49
Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Query: 10 LPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEE 69
LP+ +TG + + P SS S+K SGS++ S+ + +P K D + E
Sbjct: 70 LPSGLSPLTGYSSSLGRVSPPPSSDTSSKDHSGSESPISDEEERLQP--KLSDPHAIEAE 127
Query: 70 EYQGECTACGENYVSAS 86
++Q C C + Y + S
Sbjct: 128 KFQ--CNLCNKTYSTFS 142
>CRTC_RABIT (P15253) Calreticulin precursor (CRP55) (Calregulin)
(HACBP) (ERp60)
Length = 418
Score = 31.2 bits (69), Expect = 0.49
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 5/59 (8%)
Query: 17 VTGSAKKQTKEKPSVSSH-----NSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEE 70
VT +A+KQ K+K K K +A E K K ED+E+ D+EEE
Sbjct: 349 VTKTAEKQMKDKQDEEQRLKEEEEEKKRKEEEEAEEDEEDKDDKEDEDEDEEDKDEEEE 407
>CRT2_BOVIN (P42918) Calreticulin, brain isoform 2 precursor (CRP55)
(Calregulin) (HACBP)
Length = 421
Score = 31.2 bits (69), Expect = 0.49
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 17 VTGSAKKQTKEKPSVSS--HNSNKSKSGSKARGSELAKYSKPPAKEDDEEVDDEEEYQGE 74
VT +A+KQ K+K H + K G + +E K ED+E+ D++EE + E
Sbjct: 353 VTKAAEKQMKDKQDEEQRLHEEEEEKKGKEEEEAE--KDDDEDKDEDEEDEDEKEEEEEE 410
Query: 75 CTACGE 80
A +
Sbjct: 411 DAAAAQ 416
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.299 0.121 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,830,098
Number of Sequences: 164201
Number of extensions: 412923
Number of successful extensions: 3263
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 2716
Number of HSP's gapped (non-prelim): 497
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC149574.9