BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149471.17 - phase: 0 /pseudo
(1391 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 501 e-141
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 332 4e-90
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 196 3e-49
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 155 6e-37
YMD9_YEAST (Q03434) Transposon Ty1 protein B 117 3e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 115 8e-25
YMU0_YEAST (Q04670) Transposon Ty1 protein B 114 2e-24
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 114 2e-24
YME4_YEAST (Q04711) Transposon Ty1 protein B 114 2e-24
YJZ9_YEAST (P47100) Transposon Ty1 protein B 112 5e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 109 5e-23
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 108 1e-22
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 104 1e-21
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 87 4e-16
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 49 7e-05
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 49 1e-04
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 48 2e-04
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 47 3e-04
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 47 3e-04
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 47 3e-04
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 501 bits (1291), Expect = e-141
Identities = 394/1396 (28%), Positives = 635/1396 (45%), Gaps = 149/1396 (10%)
Query: 24 DDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEVWHDLQERFSKVDRIRIANLR 83
D + W + S + +SD + I+ DTA +W L+ + L+
Sbjct: 45 DTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLK 104
Query: 84 STINNLKQGS-KSVLDYFTEMKALWEELASHRPIPNCSCIHPCRCEASKVAKIHRNEDQI 142
+ L + L + L +LA+ KI ED+
Sbjct: 105 KQLYALHMSEGTNFLSHLNVFNGLITQLANLG------------------VKIEE-EDKA 145
Query: 143 MQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEES-----NNASLSSLSVSDDSSI 197
+ L L + + T +L L V S ++ E N + ++ S
Sbjct: 146 ILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSY 205
Query: 198 QINASDVRKFQGRGKNPSQPKP-TRLCTFSNRTNHTVDFCYLKHGYPNVNKAQPRVNAVT 256
Q ++++ + RGK+ ++ K R C N+ H K PN K + +
Sbjct: 206 QRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH------FKRDCPNPRKGKGETSGQK 259
Query: 257 HEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASLLQQANLVVPASSSSQASSNHISANP 316
++D A+++Q + VV + + +
Sbjct: 260 NDD---------------------------NTAAMVQNNDNVVLFINEEEECMH------ 286
Query: 317 LISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVL 376
+S PES W++D+ A+ H + F + V + N +
Sbjct: 287 -----LSGPESE----------WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSK 331
Query: 377 VQYAGTVSFTSN----FYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMS 432
+ G + +N L V + P NLIS L Y +F + +
Sbjct: 332 IAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRD-GYESYFANQKWRLTKGSL 390
Query: 433 LKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLG 492
+ G+A+ LY+ C N++ S LWH R+G
Sbjct: 391 VIAKGVARGT--LYRTNAEICQGE------------------LNAAQDEISVDLWHKRMG 430
Query: 493 HLSHQRLHSMSLLYPNIIS---SNNKDVCDLCHFAKHKHLPFNSSISHASTNFELLHLDI 549
H+S + L ++ ++IS CD C F K + F +S +L++ D+
Sbjct: 431 HMSEKGLQILAK--KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDV 488
Query: 550 WGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIR 609
GP+ I S+ G++YF+T +DD SR LWV +LK+K +V F +++ + K +R
Sbjct: 489 CGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLR 548
Query: 610 TDNGPEFMLSTFY---ASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPS 666
+DNG E+ F +SHGI H+K+ TPQ NG ER ++ I+ R++L +KLP S
Sbjct: 549 SDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKS 608
Query: 667 FWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQ 726
FW A+ A +LINR P+ L + P V ++ + + KVFGC +A + RTKL
Sbjct: 609 FWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLD 668
Query: 727 PRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSS 786
++ IF+GY G+ L+D +++ SR V F E+ + N +
Sbjct: 669 DKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFV 728
Query: 787 NFSDVSNQPTPINSPA--IIDDILPPSPPINPPPPPPIPVVSPASRTSTRQTTTPSYLQD 844
SN PT S + + P I V T + P L+
Sbjct: 729 TIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQP--LRR 786
Query: 845 YVCNNIHTSPYPINNYISHHNLSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQ---AMQV 901
+ + YP Y+ + EP+S E H Q AMQ
Sbjct: 787 SERPRVESRRYPSTEYVL--------------ISDDREPESLKEVLSHPEKNQLMKAMQE 832
Query: 902 ELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYF 961
E+++L+K GT++LV+LP +P+ C+W++K+K D + R+KARLV KG+ Q +G+D+
Sbjct: 833 EMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFD 892
Query: 962 DTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIK-SNKPNQ 1020
+ +SPV K+T+IR +++L++ + + QLDV AFLHGDL+E++YM P G + + K +
Sbjct: 893 EIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHM 952
Query: 1021 VCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTS-SSFTILLVYVDDI 1079
VCKL KSLYGLKQA R+WY K S + Y++ SD ++ K+ S ++F ILL+YVDD+
Sbjct: 953 VCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDM 1012
Query: 1080 IIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLG--ISLCQRKYCLDLLAD 1137
+I G +K L SF +KDLG + LG+++ + + L Q KY +L
Sbjct: 1013 LIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLER 1072
Query: 1138 SGTIDSKPVSTPSDSSIKLHQDSSP-------SYADIPSYRRLVGRLLY-LNTTRPDITF 1189
++KPVSTP +KL + P + A +P Y VG L+Y + TRPDI
Sbjct: 1073 FNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIAH 1131
Query: 1190 ITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTR 1249
+S+FL P + H A +LRYL+G G L F + I L+G++DAD AG +D R
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNR 1190
Query: 1250 RSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPK 1309
+S +G F ISW++K Q V+ S++EAEY A E+ W+ LQ++ + K
Sbjct: 1191 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH-QK 1249
Query: 1310 LPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTK 1369
V+YCD+QSA+ ++ N ++H RTKH+++ H +RE V LK+L +S+ + AD TK
Sbjct: 1250 EYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1309
Query: 1370 ALLPKPFNILLSKMGL 1385
+ F + +G+
Sbjct: 1310 VVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 332 bits (851), Expect = 4e-90
Identities = 195/537 (36%), Positives = 302/537 (55%), Gaps = 13/537 (2%)
Query: 861 ISHHNLSNNYSSFVMSLHTTTE--PKSYAEASKHD---CWKQAMQVELQALEKTGTWQLV 915
IS++ N+ + V++ HT P S+ E D W++A+ EL A + TW +
Sbjct: 867 ISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTIT 926
Query: 916 DLPSNIKPIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRL 975
P N + RW++ VKY+ G+ R+KARLVA+G+ Q +DY +T++PVA++++ R
Sbjct: 927 KRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRF 986
Query: 976 VIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQAS 1035
+++L +N +HQ+DV AFL+G L+E++YM +P GI N N VCKL K++YGLKQA+
Sbjct: 987 ILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN-VCKLNKAIYGLKQAA 1045
Query: 1036 RKWYEKLTSVLSHHHYIQASSDHSLFV--KKTSSSFTILLVYVDDIIIAGDSLTEFTYIK 1093
R W+E L ++ +S D +++ K + +L+YVDD++IA +T K
Sbjct: 1046 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1105
Query: 1094 SVLDASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSS 1153
L F++ DL ++K+F+GI + + I L Q Y +L+ + VSTP S
Sbjct: 1106 RYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSK 1165
Query: 1154 IKLHQDSSPSYADIPSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRV 1212
I +S + P R L+G L+Y+ TRPD+T LS++ S+ RV
Sbjct: 1166 INYELLNSDEDCNTPC-RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRV 1224
Query: 1213 LRYLKGCPGRGLFFPRNSSI--NLQGFSDADWAGCLDTRRSISGQCFFLGN-SLISWRTK 1269
LRYLKG L F +N + + G+ D+DWAG R+S +G F + + +LI W TK
Sbjct: 1225 LRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTK 1284
Query: 1270 KQITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVF 1329
+Q +V+ SS+EAEY AL A E W+ +LL I+I +Y DNQ + IA NP
Sbjct: 1285 RQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSC 1344
Query: 1330 HERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLI 1386
H+R KH++I H RE+VQ ++ L + +++Q+AD FTK L F L K+GL+
Sbjct: 1345 HKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401
Score = 143 bits (361), Expect = 3e-33
Identities = 116/446 (26%), Positives = 211/446 (47%), Gaps = 47/446 (10%)
Query: 339 WLLDSGANEHISCNLSFFS-SFYRIPPVYVSLPNK-TCVLVQYAGTVSFTSN--FYLSHV 394
++LDSGA++H+ + S ++ S +PP+ +++ + + G V ++ L V
Sbjct: 289 FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 395 LYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCS 454
L+ NL+SV +L E+ S+ F + I L ++ + L+ + + S
Sbjct: 349 LFCKEAAGNLMSVKRLQEA-GMSIEFDKSGVTISKN-GLMVVKNSGMLNNVPVINFQAYS 406
Query: 455 SNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNN 514
N+ HK+ + LWH R GH+S +L + + N+ S +
Sbjct: 407 INA-----KHKN----------------NFRLWHERFGHISDGKL--LEIKRKNMFSDQS 443
Query: 515 K--------DVCDLCHFAKHKHLPFNS--SISHASTNFELLHLDIWGPLSIASVHGHRYF 564
++C+ C K LPF +H ++H D+ GP++ ++ YF
Sbjct: 444 LLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYF 503
Query: 565 LTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFM---LSTF 621
+ VD + + L+K K++V + +F+ + F++ ++ DNG E++ + F
Sbjct: 504 VIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQF 563
Query: 622 YASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINR 681
GI + + TPQ NG ER + I R ++ +KL SFW A+L A +LINR
Sbjct: 564 CVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 623
Query: 682 VPTPIL--HNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKS 739
+P+ L +++PY + H++ P L +VFG Y +++ + K ++ KSIF+GY+
Sbjct: 624 IPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVH-IKNKQGKFDDKSFKSIFVGYEP 682
Query: 740 GFKGFTLYDIQSREIFVSRHVTFHET 765
GF L+D + + V+R V ET
Sbjct: 683 --NGFKLWDAVNEKFIVARDVVVDET 706
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 196 bits (499), Expect = 3e-49
Identities = 104/225 (46%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Query: 1072 LLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYC 1131
LL+YVDDI++ G S T + L ++F +KDLG + YFLGI++ G+ L Q KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1132 LDLLADSGTIDSKPVSTPSDSSIKLHQD-SSPSYADIPSYRRLVGRLLYLNTTRPDITFI 1190
+L ++G +D KP+STP +KL+ S+ Y D +R +VG L YL TRPDI++
Sbjct: 63 EQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 1191 TQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRR 1250
+ Q + +PT A RVLRY+KG GL+ +NS +N+Q F D+DWAGC TRR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 1251 SISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQW 1295
S +G C FLG ++ISW K+Q TVSRSS+E EYRALA EL W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 155 bits (393), Expect = 6e-37
Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 4/308 (1%)
Query: 990 LDVNNAFLHGDLQEDVYMLIPPG-IKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSH 1048
+DV+ AFL+ + E +Y+ PPG + P+ V +L +YGLKQA W E + + L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1049 HHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQL 1108
+ + +H L+ + TS + VYVDD+++A S + +K L + +KDLG++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1109 KYFLGIEVAHSKLG-ISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADI 1167
FLG+ + S G I+L + Y ++S K TP +S L + +SP DI
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1168 PSYRRLVGRLLY-LNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
Y+ +VG+LL+ NT RPDI++ LS+FL +P H +A RVLRYL L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1227 PRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKK-QITVSRSSSEAEYRA 1285
S + L + DA D S G L + ++W +KK + + S+EAEY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1286 LASATCEL 1293
+ E+
Sbjct: 301 ASETVMEI 308
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (292), Expect = 3e-25
Identities = 130/521 (24%), Positives = 243/521 (45%), Gaps = 55/521 (10%)
Query: 897 QAMQVELQALEKTGTWQLVDL--PSNIKP---IGCRWIYKVKYHADGSIERHKARLVAKG 951
+A E+ L K TW + I P I +I+ K DG+ HKAR VA+G
Sbjct: 825 EAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG 879
Query: 952 YNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQEDVY 1006
+ + DTY + T+ ++S+ +N+++ QLD+++A+L+ D++E++Y
Sbjct: 880 -----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELY 934
Query: 1007 MLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTS 1066
+ PP + N +++ +L+KSLYGLKQ+ WYE + S L ++ S K +
Sbjct: 935 IRPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFK--N 990
Query: 1067 SSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIEVAHS 1119
S TI L +VDD+I+ L I + L + KI +LG +++Y LG+E+ +
Sbjct: 991 SQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQ 1049
Query: 1120 -----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-----I 1167
KLG+ SL ++ L++ + + +S P + + QD D +
Sbjct: 1050 RGKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 1168 PSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
++L+G Y+ R D+ + L+Q + P++ +++++ + L +
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 1227 PRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAE 1282
+N L SDA + G +S G + L +I ++ K S++EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 1283 YRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHE-RTKHLEIDCH 1341
A++ + L + YL+Q+++ P + L D++S + I + + R +
Sbjct: 1226 IHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAM 1284
Query: 1342 IVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1285 RLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 66.6 bits (161), Expect = 4e-10
Identities = 87/371 (23%), Positives = 149/371 (39%), Gaps = 33/371 (8%)
Query: 336 PSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSF--TSNFYLS- 392
P + LLDSGA+ + + S P + V K + + G + F N S
Sbjct: 28 PGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI 87
Query: 393 HVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSS 452
VL++P ++L+S+ +L ++ + FT +++ + + + K D +
Sbjct: 88 KVLHTPNIAYDLLSLNELA-AVDITACFTKN--VLERSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 453 CSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISS 512
SN +S + N V T P H L H + Q + SL I
Sbjct: 145 LPSN-----ISVPTINNVHTSESTRKYPYP---FIHRMLAHANAQTIR-YSLKNNTITYF 195
Query: 513 NNKDV------------CDLCHFAKHKHLPFNS-SISHASTNFELLHLDIWGPLSIASVH 559
N DV C + KH+H+ + ++ F+ LH DI+GP+
Sbjct: 196 NESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKS 255
Query: 560 GHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI--NFITMIQTQFHITPKFIRTDNGPEF- 616
YF++ D+ ++F WV L + E S + + I+ QF + I+ D G E+
Sbjct: 256 APSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYT 315
Query: 617 --MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILH 674
L F +GI + + +G ER ++ +L+ R L S LP W AI
Sbjct: 316 NRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEF 375
Query: 675 AVFLINRVPTP 685
+ + N + +P
Sbjct: 376 STIVRNSLASP 386
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 115 bits (288), Expect = 8e-25
Identities = 130/521 (24%), Positives = 242/521 (45%), Gaps = 55/521 (10%)
Query: 897 QAMQVELQALEKTGTWQLVDL--PSNIKP---IGCRWIYKVKYHADGSIERHKARLVAKG 951
+A E+ L K TW + I P I +I+ K DG+ HKAR VA+G
Sbjct: 1252 EAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG 1306
Query: 952 YNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQEDVY 1006
+ + DTY + T+ ++S+ +N+++ QLD+++A+L+ D++E++Y
Sbjct: 1307 -----DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELY 1361
Query: 1007 MLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTS 1066
+ PP + N +++ +L+KS YGLKQ+ WYE + S L ++ S K +
Sbjct: 1362 IRPPPHLGMN--DKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFK--N 1417
Query: 1067 SSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIEVAHS 1119
S TI L +VDD+I+ L I + L + KI +LG +++Y LG+E+ +
Sbjct: 1418 SQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQ 1476
Query: 1120 -----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-----I 1167
KLG+ SL ++ L++ + + +S P + + QD D +
Sbjct: 1477 RGKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1533
Query: 1168 PSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
++L+G Y+ R D+ + L+Q + P++ +++++ + L +
Sbjct: 1534 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1593
Query: 1227 PRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAE 1282
+N L SDA + G +S G F L +I ++ K S++EAE
Sbjct: 1594 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1652
Query: 1283 YRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHE-RTKHLEIDCH 1341
A++ + L + YL+Q+++ P + L D++S + I + + R +
Sbjct: 1653 IHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAM 1711
Query: 1342 IVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1712 RLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 64.7 bits (156), Expect = 2e-09
Identities = 86/371 (23%), Positives = 149/371 (39%), Gaps = 33/371 (8%)
Query: 336 PSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSF--TSNFYLS- 392
P + LLDSGA+ + + S P + V K + + G + F N S
Sbjct: 455 PGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI 514
Query: 393 HVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSS 452
VL++P ++L+S+ +L ++ + FT +++ + + + + D +
Sbjct: 515 KVLHTPNIAYDLLSLNELA-AVDITACFTKN--VLERSDGTVLAPIVQYGDFYWVSKRYL 571
Query: 453 CSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISS 512
SN +S + N V T P H L H + Q + SL I
Sbjct: 572 LPSN-----ISVPTINNVHTSESTRKYPYP---FIHRMLAHANAQTIR-YSLKNNTITYF 622
Query: 513 NNKDV------------CDLCHFAKHKHLPFNS-SISHASTNFELLHLDIWGPLSIASVH 559
N DV C + KH+H+ + ++ F+ LH DI+GP+
Sbjct: 623 NESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKS 682
Query: 560 GHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI--NFITMIQTQFHITPKFIRTDNGPEF- 616
YF++ D+ ++F WV L + E S + + I+ QF + I+ D G E+
Sbjct: 683 APSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYT 742
Query: 617 --MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILH 674
L F +GI + + +G ER ++ +L+ R L S LP W AI
Sbjct: 743 NRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEF 802
Query: 675 AVFLINRVPTP 685
+ + N + +P
Sbjct: 803 STIVRNSLASP 813
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (285), Expect = 2e-24
Identities = 128/520 (24%), Positives = 242/520 (45%), Gaps = 53/520 (10%)
Query: 897 QAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKY----HADGSIERHKARLVAKGY 952
QA E+ L K TW D + K I + + + DG+ HKAR VA+G
Sbjct: 825 QAYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARG- 879
Query: 953 NQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQEDVYM 1007
+ + DTY P + T+ ++S+ +N+++ QLD+++A+L+ D++E++Y+
Sbjct: 880 ----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 935
Query: 1008 LIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTSS 1067
PP + N +++ +L+KSLYGLKQ+ WYE + S L ++ S K +S
Sbjct: 936 RPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFK--NS 991
Query: 1068 SFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIEVAHS- 1119
TI L +VDD+I+ L I + L + KI +LG +++Y LG+E+ +
Sbjct: 992 QVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQR 1050
Query: 1120 ----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-----IP 1168
KLG+ SL ++ L++ + + +S P + + Q D +
Sbjct: 1051 GKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQQELELEEDDYKMKVH 1107
Query: 1169 SYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFP 1227
++L+G Y+ R D+ + L+Q + P++ +++++ + L +
Sbjct: 1108 EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWH 1167
Query: 1228 RNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEY 1283
++ + L SDA + G +S G + L +I ++ K S++EAE
Sbjct: 1168 KSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEI 1226
Query: 1284 RALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALH-IAANPVFHERTKHLEIDCHI 1342
A++ + L + +L+Q+++ P L D++S + I +N R +
Sbjct: 1227 HAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMR 1285
Query: 1343 VREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1286 LRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 67.4 bits (163), Expect = 3e-10
Identities = 92/399 (23%), Positives = 159/399 (39%), Gaps = 36/399 (9%)
Query: 308 SSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFYRIPPVYV 367
S+ I L +T++ S + P + LLDSGA+ + + S P + V
Sbjct: 3 STTFILGQKLTESTVNHTNHSDDEL---PGHLLLDSGASRTLIRSAHHIHSASSNPDINV 59
Query: 368 SLPNKTCVLVQYAGTVSF--TSNFYLS-HVLYSPAFTHNLISVAKLCESLSYSLHFTSAH 424
K + + G + F N S VL++P ++L+S+ +L ++ + FT
Sbjct: 60 VDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELA-AVDITACFTKN- 117
Query: 425 CIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSN 484
+++ + + + K D + SN +S + N V T P
Sbjct: 118 -VLERSDGTVLAPIVKYGDFYWVSKKYLLPSN-----ISVPTINNVHTSESTRKYPYP-- 169
Query: 485 ALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV------------CDLCHFAKHKHLPFN 532
H L H + Q + SL I N DV C + KH+H+ +
Sbjct: 170 -FIHRMLAHANAQTIR-YSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGS 227
Query: 533 S-SISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI 591
++ F+ LH DI+GP+ YF++ D+ ++F WV L + E S +
Sbjct: 228 RLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDV 287
Query: 592 --NFITMIQTQFHITPKFIRTDNGPEF---MLSTFYASHGIIHQKSCVETPQQNGRVERK 646
+ I+ QF + I+ D G E+ L F +GI + + +G ER
Sbjct: 288 FTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERL 347
Query: 647 HQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTP 685
++ +L+ R L S LP W AI + + N + +P
Sbjct: 348 NRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASP 386
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 114 bits (285), Expect = 2e-24
Identities = 132/525 (25%), Positives = 245/525 (46%), Gaps = 55/525 (10%)
Query: 893 DCWKQAMQVELQALEKTGTWQLVDL--PSNIKP---IGCRWIYKVKYHADGSIERHKARL 947
D + +A E+ L K TW ++I P I +I+ K DG+ HKAR
Sbjct: 1263 DRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKK--RDGT---HKARF 1317
Query: 948 VAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQ 1002
VA+G + + DTY + T+ ++S+ +++++ QLD+++A+L+ D++
Sbjct: 1318 VARG-----DIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIK 1372
Query: 1003 EDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFV 1062
E++Y+ PP + N +++ +L+KSLYGLKQ+ WYE + S L + +Q S
Sbjct: 1373 EELYIRPPPHLGLN--DKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVF 1430
Query: 1063 KKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIE 1115
K +S TI L +VDD+I+ L I + L + KI +LG +++Y LG+E
Sbjct: 1431 K--NSQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLE 1487
Query: 1116 VAHS-----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-- 1166
+ + KLG+ SL ++ L++ + K + P + QD D
Sbjct: 1488 IKYQRSKYMKLGMEKSLTEKLPKLNVPLNP---KGKKLRAPGQPGHYIDQDELEIDEDEY 1544
Query: 1167 ---IPSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGR 1222
+ ++L+G Y+ R D+ + L+Q + P++ +++++ +
Sbjct: 1545 KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1604
Query: 1223 GLFFPRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSS 1278
L + +N L SDA + G +S G F L +I ++ K S+
Sbjct: 1605 QLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTST 1663
Query: 1279 SEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHE-RTKHLE 1337
+EAE A++ A L + +L+Q+++ P + L D++S + I + + R +
Sbjct: 1664 TEAEIHAVSEAIPLLNNLSHLVQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFG 1722
Query: 1338 IDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1723 TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
Score = 73.2 bits (178), Expect = 5e-12
Identities = 92/430 (21%), Positives = 176/430 (40%), Gaps = 53/430 (12%)
Query: 294 QANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPK--------------PSYW 339
+A+ + +S S+ +++HI+ + + S +S S G K P +
Sbjct: 395 KAHNIATSSKFSRVNNDHINESTVSSQYLSDDNELSLGQQQKESKPTHTIDSNDELPDHL 454
Query: 340 LLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLS-----HV 394
L+DSGA++ + + + + + K + + G + F NF
Sbjct: 455 LIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHF--NFQNGTKTSIKA 512
Query: 395 LYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCS 454
L++P ++L+S+++L C ++T+ L + K+
Sbjct: 513 LHTPNIAYDLLSLSELANQ-------NITACFTRNTLERSD---GTVLAPIVKHGDFYWL 562
Query: 455 SNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRL------HSMSLLYPN 508
S + SH S + ++ + S + L H LGH + + + ++++ L +
Sbjct: 563 SKK-YLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKES 621
Query: 509 IISSNNKDV-----CDLCHFAKHKHLPFNS-SISHASTNFELLHLDIWGPLSIASVHGHR 562
I +N C + KH+H+ + + F+ LH DI+GP+
Sbjct: 622 DIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPS 681
Query: 563 YFLTIVDDHSRFLWVILLKSKAEVSTHVINFIT----MIQTQFHITPKFIRTDNGPEF-- 616
YF++ D+ +RF WV L + E S ++N T I+ QF+ I+ D G E+
Sbjct: 682 YFISFTDEKTRFQWVYPLHDRREES--ILNVFTSILAFIKNQFNARVLVIQMDRGSEYTN 739
Query: 617 -MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHA 675
L F+ + GI + + +G ER ++ +LN R LL S LP W A+ +
Sbjct: 740 KTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFS 799
Query: 676 VFLINRVPTP 685
+ N + +P
Sbjct: 800 TIIRNSLVSP 809
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (284), Expect = 2e-24
Identities = 130/521 (24%), Positives = 241/521 (45%), Gaps = 55/521 (10%)
Query: 897 QAMQVELQALEKTGTWQLVDL--PSNIKP---IGCRWIYKVKYHADGSIERHKARLVAKG 951
+A E+ L K TW I P I +I+ K DG+ HKAR VA+G
Sbjct: 825 EAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRK--RDGT---HKARFVARG 879
Query: 952 YNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQEDVY 1006
+ + DTY + T+ ++S+ +N+++ QLD+++A+L+ D++E++Y
Sbjct: 880 -----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELY 934
Query: 1007 MLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTS 1066
+ PP + N +++ +L+KSLYGLKQ+ WYE + S L ++ S K +
Sbjct: 935 IRPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFK--N 990
Query: 1067 SSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIEVAHS 1119
S TI L +VDD+I+ L I + L + KI +LG +++Y LG+E+ +
Sbjct: 991 SQVTICL-FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQ 1049
Query: 1120 -----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-----I 1167
KLG+ SL ++ L++ + + +S P + + QD D +
Sbjct: 1050 RGKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 1168 PSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
++L+G Y+ R D+ + L+Q + P++ +++++ + L +
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 1227 PRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAE 1282
+N L SDA + G +S G + L +I ++ K S++EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 1283 YRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALH-IAANPVFHERTKHLEIDCH 1341
A++ + L + +L+Q+++ P L D++S + I +N R +
Sbjct: 1226 IHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1284
Query: 1342 IVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1285 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 67.4 bits (163), Expect = 3e-10
Identities = 92/399 (23%), Positives = 159/399 (39%), Gaps = 36/399 (9%)
Query: 308 SSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFYRIPPVYV 367
S+ I L +T++ S + P + LLDSGA+ + + S P + V
Sbjct: 3 STTFILGQKLTESTVNHTNHSDDEL---PGHLLLDSGASRTLIRSAHHIHSASSNPDINV 59
Query: 368 SLPNKTCVLVQYAGTVSF--TSNFYLS-HVLYSPAFTHNLISVAKLCESLSYSLHFTSAH 424
K + + G + F N S VL++P ++L+S+ +L ++ + FT
Sbjct: 60 VDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELA-AVDITACFTKN- 117
Query: 425 CIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSN 484
+++ + + + K D + SN +S + N V T P
Sbjct: 118 -VLERSDGTVLAPIVKYGDFYWVSKKYLLPSN-----ISVPTINNVHTSESTRKYPYP-- 169
Query: 485 ALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV------------CDLCHFAKHKHLPFN 532
H L H + Q + SL I N DV C + KH+H+ +
Sbjct: 170 -FIHRMLAHANAQTIR-YSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGS 227
Query: 533 S-SISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI 591
++ F+ LH DI+GP+ YF++ D+ ++F WV L + E S +
Sbjct: 228 RLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDV 287
Query: 592 --NFITMIQTQFHITPKFIRTDNGPEF---MLSTFYASHGIIHQKSCVETPQQNGRVERK 646
+ I+ QF + I+ D G E+ L F +GI + + +G ER
Sbjct: 288 FTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERL 347
Query: 647 HQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTP 685
++ +L+ R L S LP W AI + + N + +P
Sbjct: 348 NRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASP 386
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 112 bits (281), Expect = 5e-24
Identities = 128/521 (24%), Positives = 241/521 (45%), Gaps = 55/521 (10%)
Query: 897 QAMQVELQALEKTGTWQLVDL--PSNIKP---IGCRWIYKVKYHADGSIERHKARLVAKG 951
+A E+ L K TW + I P I +I+ K DG+ HKAR VA+G
Sbjct: 1252 EAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG 1306
Query: 952 YNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFLHGDLQEDVY 1006
+ + DTY + T+ ++S+ +N+++ QLD+++A+L+ D++E++Y
Sbjct: 1307 -----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELY 1361
Query: 1007 MLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTS 1066
+ PP + N +++ +L+KSLYGLKQ+ WYE + S L ++ S K +
Sbjct: 1362 IRPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFK--N 1417
Query: 1067 SSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY-FLGIEVAHS 1119
S TI L +VDD+++ +L I L + KI +LG +++Y LG+E+ +
Sbjct: 1418 SQVTICL-FVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQ 1476
Query: 1120 -----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYAD-----I 1167
KLG+ SL ++ L++ + + +S P + + Q D +
Sbjct: 1477 RGKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQQELELEEDDYKMKV 1533
Query: 1168 PSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
++L+G Y+ R D+ + L+Q + P++ +++++ + L +
Sbjct: 1534 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW 1593
Query: 1227 PRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAE 1282
++ + L SDA + G +S G + L +I ++ K S++EAE
Sbjct: 1594 HKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1652
Query: 1283 YRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALH-IAANPVFHERTKHLEIDCH 1341
A++ + L + YL+Q++ P L D++S + I +N R +
Sbjct: 1653 IHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1711
Query: 1342 IVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1712 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 66.6 bits (161), Expect = 4e-10
Identities = 87/371 (23%), Positives = 149/371 (39%), Gaps = 33/371 (8%)
Query: 336 PSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSF--TSNFYLS- 392
P + LLDSGA+ + + S P + V K + + G + F N S
Sbjct: 455 PGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI 514
Query: 393 HVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSS 452
VL++P ++L+S+ +L ++ + FT +++ + + + K D +
Sbjct: 515 KVLHTPNIAYDLLSLNELA-AVDITACFTKN--VLERSDGTVLAPIVKYGDFYWVSKKYL 571
Query: 453 CSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISS 512
SN +S + N V T P H L H + Q + SL I
Sbjct: 572 LPSN-----ISVPTINNVHTSESTRKYPYP---FIHRMLAHANAQTIR-YSLKNNTITYF 622
Query: 513 NNKDV------------CDLCHFAKHKHLPFNS-SISHASTNFELLHLDIWGPLSIASVH 559
N DV C + KH+H+ + ++ F+ LH DI+GP+
Sbjct: 623 NESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKS 682
Query: 560 GHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI--NFITMIQTQFHITPKFIRTDNGPEF- 616
YF++ D+ ++F WV L + E S + + I+ QF + I+ D G E+
Sbjct: 683 APSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYT 742
Query: 617 --MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILH 674
L F +GI + + +G ER ++ +L+ R L S LP W AI
Sbjct: 743 NRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEF 802
Query: 675 AVFLINRVPTP 685
+ + N + +P
Sbjct: 803 STIVRNSLASP 813
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 109 bits (273), Expect = 5e-23
Identities = 114/470 (24%), Positives = 222/470 (46%), Gaps = 45/470 (9%)
Query: 943 HKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSI-----HNWHLHQLDVNNAFL 997
HKAR VA+G + + DTY + T+ ++S+ +N+++ QLD+++A+L
Sbjct: 871 HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYL 925
Query: 998 HGDLQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSD 1057
+ D++E++Y+ PP + N +++ +L+KSLYGLKQ+ WYE + S L ++
Sbjct: 926 YADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG 983
Query: 1058 HSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF--KIKDLG----QLKY- 1110
S + +S TI L +VDD+++ +L I L + KI +LG +++Y
Sbjct: 984 WSCVFE--NSQVTICL-FVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYD 1040
Query: 1111 FLGIEVAHS-----KLGI--SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPS 1163
LG+E+ + KLG+ SL ++ L++ + + +S P + + Q
Sbjct: 1041 ILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNP---KGRKLSAPGQPGLYIDQQELEL 1097
Query: 1164 YAD-----IPSYRRLVGRLLYLN-TTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLK 1217
D + ++L+G Y+ R D+ + L+Q + P++ +++++
Sbjct: 1098 EEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIW 1157
Query: 1218 GCPGRGLFFPRNSSI----NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQIT 1273
+ L + ++ + L SDA + G +S G + L +I ++ K
Sbjct: 1158 NTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASL 1216
Query: 1274 VSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALH-IAANPVFHER 1332
S++EAE A++ + L + YL+Q++ P L D++S + I +N R
Sbjct: 1217 TCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNEEKFR 1275
Query: 1333 TKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSK 1382
+ +R++V L + + ++ +AD TK L K F +L +K
Sbjct: 1276 NRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 66.6 bits (161), Expect = 4e-10
Identities = 87/371 (23%), Positives = 149/371 (39%), Gaps = 33/371 (8%)
Query: 336 PSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSF--TSNFYLS- 392
P + LLDSGA+ + + S P + V K + + G + F N S
Sbjct: 28 PGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSI 87
Query: 393 HVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSS 452
VL++P ++L+S+ +L ++ + FT +++ + + + K D +
Sbjct: 88 KVLHTPNIAYDLLSLNELA-AVDITACFTKN--VLERSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 453 CSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISS 512
SN +S + N V T P H L H + Q + SL I
Sbjct: 145 LPSN-----ISVPTINNVHTSESTRKYPYP---FIHRMLAHANAQTIR-YSLKNNTITYF 195
Query: 513 NNKDV------------CDLCHFAKHKHLPFNS-SISHASTNFELLHLDIWGPLSIASVH 559
N DV C + KH+H+ + ++ F+ LH DI+GP+
Sbjct: 196 NESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKS 255
Query: 560 GHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI--NFITMIQTQFHITPKFIRTDNGPEF- 616
YF++ D+ ++F WV L + E S + + I+ QF + I+ D G E+
Sbjct: 256 APSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYT 315
Query: 617 --MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILH 674
L F +GI + + +G ER ++ +L+ R L S LP W AI
Sbjct: 316 NRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEF 375
Query: 675 AVFLINRVPTP 685
+ + N + +P
Sbjct: 376 STIVRNSLASP 386
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 108 bits (269), Expect = 1e-22
Identities = 120/516 (23%), Positives = 230/516 (44%), Gaps = 50/516 (9%)
Query: 891 KHDCWKQAMQVELQALEKTGTWQL------VDLPSNIKPIGCRWIYKVKYHADGSIERHK 944
KH+ +KQA ELQ L+ + + ++P N+ + I+ K + +K
Sbjct: 1286 KHE-YKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNLI-VPTNTIFTKKRNGI-----YK 1338
Query: 945 ARLVAKGYNQIEGLDYFDTYSPVAKLTT----IRLVIALSSIHNWHLHQLDVNNAFLHGD 1000
AR+V +G Q DTYS + + I++ + +++ N + LD+N+AFL+
Sbjct: 1339 ARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAK 1393
Query: 1001 LQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSL 1060
L+E++Y+ P + V KL K+LYGLKQ+ ++W + L L+ S L
Sbjct: 1394 LEEEIYIPHP-----HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL 1448
Query: 1061 FVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQL------KYFLGI 1114
+ +T ++ VYVDD +IA + + L ++F++K G L LG+
Sbjct: 1449 Y--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGM 1506
Query: 1115 EVAHSK-LG-ISLCQRKYC--LDLLADSGTIDSKPVSTPSDSSIK-------LHQDSSPS 1163
++ ++K LG I L + + +D + + S P S+ K L
Sbjct: 1507 DLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEF 1566
Query: 1164 YADIPSYRRLVGRLLYL-NTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGR 1222
+ ++L+G L Y+ + R DI F +++++ ++ P + ++++YL
Sbjct: 1567 RQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDI 1626
Query: 1223 GLFFPR--NSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSE 1280
G+ + R N + +DA D + I G + G ++ + + K SS+E
Sbjct: 1627 GIHYDRDCNKDKKVIAITDASVGSEYDAQSRI-GVILWYGMNIFNVYSNKSTNRCVSSTE 1685
Query: 1281 AEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDC 1340
AE A+ + + + L+++ V+ D++ A+ + K I
Sbjct: 1686 AELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKT 1745
Query: 1341 HIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPF 1376
I++EK++ +KLL ++ + +AD TK + F
Sbjct: 1746 EIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDF 1781
Score = 75.9 bits (185), Expect = 7e-13
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 488 HFRLGHLSHQRL-----HSMSLLYPNIISSNNKDVCDLCHFAKH-KHLPFNSSISHASTN 541
H R+GH Q++ H+ ++I N+ C C +K K + S+++ ST+
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 542 FE---LLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVI--LLKSKAEVSTHVINFITM 596
E +DI+GP+S ++ RY L +VD+++R+ K+ + V I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 597 IQTQFHITPKFIRTDNGPEF---MLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNV 653
++TQF + I +D G EF + ++ S GI H + + NGR ER + I+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 654 GRALLFQSKLPPSFWSYAILHAVFLIN 680
LL QS L FW YA+ A + N
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRN 768
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 104 bits (260), Expect = 1e-21
Identities = 52/113 (46%), Positives = 71/113 (62%)
Query: 865 NLSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPI 924
N N S ++ EPKS A K W QAMQ EL AL + TW LV P N +
Sbjct: 10 NKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNIL 69
Query: 925 GCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVI 977
GC+W++K K H+DG+++R KARLVAKG++Q EG+ + +TYSPV + TIR ++
Sbjct: 70 GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 86.7 bits (213), Expect = 4e-16
Identities = 42/88 (47%), Positives = 56/88 (62%), Gaps = 5/88 (5%)
Query: 1178 LYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGF 1237
+YL TRPD+TF +LSQF S A A +VL Y+KG G+GLF+ S + L+ F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1238 SDADWAGCLDTRRSISGQC-----FFLG 1260
+D+DWA C DTRRS++G C +FLG
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLG 88
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 49.3 bits (116), Expect = 7e-05
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 542 FELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVST-HVINFITMIQTQ 600
F+ ++D GPL ++ G+ + L +VD + F+W+ K+ + +T +N +T I
Sbjct: 884 FDKFYIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAI- 940
Query: 601 FHITPKFIRTDNGPEFMLSTFY---ASHGIIHQKSCVETPQQNGRVERKHQHI------L 651
PK + +D G F STF GI + S PQ +G+VERK+ I L
Sbjct: 941 ----PKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKL 996
Query: 652 NVGRALLFQSKLP 664
+GR + LP
Sbjct: 997 LIGRPAKWYDLLP 1009
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 48.9 bits (115), Expect = 1e-04
Identities = 41/133 (30%), Positives = 64/133 (47%), Gaps = 17/133 (12%)
Query: 542 FELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVST-HVINFITMIQTQ 600
F+ +D GPL ++ G+ + L +VD + F+W+ K+ + +T +N +T I
Sbjct: 886 FDKFFIDYIGPLPPSN--GYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAV- 942
Query: 601 FHITPKFIRTDNGPEFMLSTFY---ASHGIIHQKSCVETPQQNGRVERKHQHI------L 651
PK I +D G F +TF + GI + S PQ +G+VERK+ I L
Sbjct: 943 ----PKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKL 998
Query: 652 NVGRALLFQSKLP 664
VGR + LP
Sbjct: 999 LVGRPAKWYDLLP 1011
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 48.1 bits (113), Expect = 2e-04
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 542 FELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVST-HVINFITMIQTQ 600
F+ +D GPL + G+ Y L +VD + F W+ K+ + +T +N +T I
Sbjct: 676 FDKFFIDYIGPLPPSQ--GYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--- 730
Query: 601 FHITPKFIRTDNGPEFMLSTF---YASHGIIHQKSCVETPQQNGRVERKHQHILNVGRAL 657
PK I +D G F STF GI + S PQ +VERK+ I + L
Sbjct: 731 --AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKL 788
Query: 658 LFQSKLPPSFWSYAILHAVFL-INRVPTPIL 687
L P+ W Y +L V L +N +P+L
Sbjct: 789 LVGR---PTKW-YDLLPVVQLALNNTYSPVL 815
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 47.4 bits (111), Expect = 3e-04
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 558 VHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVIN-FITMIQTQFHITPKFIRTDNGPEF 616
++G++Y L VD S WV +K E + V + I +F + P+ + TDNGP F
Sbjct: 309 LYGYKYLLVFVDTFSG--WVEAFPTKHETAKIVTKKLLEEIFPRFGM-PQVLGTDNGPAF 365
Query: 617 MLSTFYASH---GIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAIL 673
+ + GI + C PQ +G+VER ++ I + L + L + +L
Sbjct: 366 VSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTI----KETLTKLTLATGTRDWVLL 421
Query: 674 HAVFLINRVPTPILHNQSPYFVLHHQLPALNLF--KVFGCLCYASTLQSHRTKLQPRAR- 730
+ L TP H +PY +L+ P L F + +LQ+H LQ R
Sbjct: 422 LPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQRE 481
Query: 731 --KSIFLGYKSGF------KGFTLYDIQSREIFVSRHVTFH-ETFLPYPHTSLSTTP 778
K + Y+ F + D ++V RH T + E P+T L TTP
Sbjct: 482 VWKPLAAAYQDQLDQPVIPHPFRVGD----TVWVRRHQTKNLEPRWKGPYTVLLTTP 534
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 47.4 bits (111), Expect = 3e-04
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 558 VHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVIN-FITMIQTQFHITPKFIRTDNGPEF 616
++G++Y L VD S WV +K E + V + I +F + P+ + TDNGP F
Sbjct: 924 LYGYKYLLVFVDTFSG--WVEAFPTKHETAKIVTKKLLEEIFPRFGM-PQVLGTDNGPAF 980
Query: 617 MLSTFYASH---GIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAIL 673
+ + GI + C PQ +G+VER ++ I + L + L + +L
Sbjct: 981 VSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTI----KETLTKLTLATGTRDWVLL 1036
Query: 674 HAVFLINRVPTPILHNQSPYFVLHHQLPALNLF--KVFGCLCYASTLQSHRTKLQPRAR- 730
+ L TP H +PY +L+ P L F + +LQ+H LQ R
Sbjct: 1037 LPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQRE 1096
Query: 731 --KSIFLGYKSGF------KGFTLYDIQSREIFVSRHVTFH-ETFLPYPHTSLSTTP 778
K + Y+ F + D ++V RH T + E P+T L TTP
Sbjct: 1097 VWKPLAAAYQDQLDQPVIPHPFRVGD----TVWVRRHQTKNLEPRWKGPYTVLLTTP 1149
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 47.4 bits (111), Expect = 3e-04
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 27/237 (11%)
Query: 558 VHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVIN-FITMIQTQFHITPKFIRTDNGPEF 616
++G++Y L VD S WV +K E + V + I +F + P+ + TDNGP F
Sbjct: 133 LYGYKYLLVFVDTFSG--WVEAFPTKHETAKIVTKKLLEEIFPRFGM-PQVLGTDNGPAF 189
Query: 617 MLSTFYASH---GIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAIL 673
+ + GI + C PQ +G+VER ++ I + L + L + +L
Sbjct: 190 VSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTI----KETLTKLTLATGTRDWVLL 245
Query: 674 HAVFLINRVPTPILHNQSPYFVLHHQLPALNLF--KVFGCLCYASTLQSHRTKLQPRAR- 730
+ L TP H +PY +L+ P L F + +LQ+H LQ R
Sbjct: 246 LPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQRE 305
Query: 731 --KSIFLGYKSGF------KGFTLYDIQSREIFVSRHVTFH-ETFLPYPHTSLSTTP 778
K + Y+ F + D ++V RH T + E P+T L TTP
Sbjct: 306 VWKPLAAAYQDQLDQPVIPHPFRVGD----TVWVRRHQTKNLEPRWKGPYTVLLTTP 358
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,572,322
Number of Sequences: 164201
Number of extensions: 6981515
Number of successful extensions: 33073
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 29102
Number of HSP's gapped (non-prelim): 1754
length of query: 1391
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1268
effective length of database: 39,777,331
effective search space: 50437655708
effective search space used: 50437655708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC149471.17