BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.1 + phase: 0
(141 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrom... 100 1e-21
PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic heli... 95 6e-20
HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like prote... 60 1e-09
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 60 2e-09
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 54 8e-08
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 53 2e-07
IND_ARATH (O81313) INDEHISCENT protein 51 7e-07
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 50 2e-06
MITF_RAT (O88368) Microphthalmia-associated transcription factor... 50 2e-06
MITF_MOUSE (Q08874) Microphthalmia-associated transcription factor 50 2e-06
MITF_HUMAN (O75030) Microphthalmia-associated transcription factor 50 2e-06
ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF ex... 50 2e-06
TFE3_MOUSE (Q64092) Transcription factor E3 (Fragment) 49 3e-06
TFEB_MOUSE (Q9R210) Transcription factor EB 49 5e-06
TFEB_HUMAN (P19484) Transcription factor EB 49 5e-06
SRE2_HUMAN (Q12772) Sterol regulatory element binding protein-2 ... 48 6e-06
SRE2_CRIGR (Q60429) Sterol regulatory element binding protein-2 ... 48 6e-06
TFE3_HUMAN (P19532) Transcription factor E3 47 1e-05
MYCN_CHICK (P18444) N-myc proto-oncogene protein 47 1e-05
SRE1_HUMAN (P36956) Sterol regulatory element binding protein-1 ... 46 2e-05
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 100 bits (249), Expect = 1e-21
Identities = 52/71 (73%), Positives = 59/71 (82%), Gaps = 2/71 (2%)
Query: 30 KAAPPPRSS--SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
K A P R+ SKRSR+AE HNLSE+RRR +INEK++ALQ LIPN NK DKASMLDEAIE
Sbjct: 328 KEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIE 387
Query: 88 YLKQLQLQVQV 98
YLK LQLQVQ+
Sbjct: 388 YLKSLQLQVQI 398
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic
helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short
under red-light 2)
Length = 430
Score = 94.7 bits (234), Expect = 6e-20
Identities = 46/68 (67%), Positives = 59/68 (86%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S++RSRAAE HNLSE+RRR +INE++KALQ LIP+ +KTDKAS+LDEAI+YLK LQLQ+Q
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 98 VSFLSLKM 105
V ++ M
Sbjct: 312 VMWMGSGM 319
>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein
HFR1) (Reduced phytochrome signaling) (Basic
helix-loop-helix FBI1 protein) (Basic helix-loop-helix
protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to
far-red light)
Length = 292
Score = 60.5 bits (145), Expect = 1e-09
Identities = 33/81 (40%), Positives = 49/81 (59%), Gaps = 11/81 (13%)
Query: 18 LKNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD 77
L +D+ SE + + R SKR +RR K++ K++ LQ L+PN +KTD
Sbjct: 120 LSSDDESEEFTREVPSVTRKGSKR-----------RRRDEKMSNKMRKLQQLVPNCHKTD 168
Query: 78 KASMLDEAIEYLKQLQLQVQV 98
K S+LD+ IEY+K LQLQ+Q+
Sbjct: 169 KVSVLDKTIEYMKNLQLQLQM 189
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 60.1 bits (144), Expect = 2e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 48 HNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
H LSEK+RR K+NE+ L+++IP+ +K DK S+LD+ IEYL+ LQ +VQ
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQ 455
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 54.3 bits (129), Expect = 8e-08
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
+++ A + H +SE++RR K+NE L++L+P+ ++ +KAS+L E I YLK+LQ +VQ
Sbjct: 409 AAQEMSATKNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQ 468
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 53.1 bits (126), Expect = 2e-07
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 48 HNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
H +SE++RR K+NE L++L+P+ ++ +KAS+L E I YLK+LQ +VQ
Sbjct: 417 HVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQ 466
>IND_ARATH (O81313) INDEHISCENT protein
Length = 169
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 53 KRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQV 98
+RRR +I+EK++ L+ ++P K D ASMLDEAI Y K L+ QV++
Sbjct: 99 RRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRI 144
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/68 (39%), Positives = 47/68 (68%), Gaps = 2/68 (2%)
Query: 48 HNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ-VQVSFLSLKMN 106
H +E++RR K+N++ AL+ ++PN +K DKAS+L +AI Y+ +L+ + V+ L++
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIK 512
Query: 107 NQTLKHVK 114
NQ L+ VK
Sbjct: 513 NQ-LEEVK 519
>MITF_RAT (O88368) Microphthalmia-associated transcription factor
(Fragment)
Length = 110
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/66 (37%), Positives = 42/66 (62%), Gaps = 4/66 (6%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD----KASMLDEAIEYLKQ 91
R+ +K + + HNL E+RRR IN+++K L LIP SN D K ++L +++Y+++
Sbjct: 13 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRK 72
Query: 92 LQLQVQ 97
LQ + Q
Sbjct: 73 LQREQQ 78
>MITF_MOUSE (Q08874) Microphthalmia-associated transcription factor
Length = 526
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/66 (37%), Positives = 42/66 (62%), Gaps = 4/66 (6%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD----KASMLDEAIEYLKQ 91
R+ +K + + HNL E+RRR IN+++K L LIP SN D K ++L +++Y+++
Sbjct: 304 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRK 363
Query: 92 LQLQVQ 97
LQ + Q
Sbjct: 364 LQREQQ 369
>MITF_HUMAN (O75030) Microphthalmia-associated transcription factor
Length = 526
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/66 (37%), Positives = 42/66 (62%), Gaps = 4/66 (6%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD----KASMLDEAIEYLKQ 91
R+ +K + + HNL E+RRR IN+++K L LIP SN D K ++L +++Y+++
Sbjct: 304 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRK 363
Query: 92 LQLQVQ 97
LQ + Q
Sbjct: 364 LQREQQ 369
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF
expression 1) (Basic helix-loop-helix protein 116)
(bHLH116) (AtbHLH116)
Length = 494
Score = 49.7 bits (117), Expect = 2e-06
Identities = 20/43 (46%), Positives = 36/43 (83%)
Query: 50 LSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQL 92
++E+RRR K+N++L L++++P +K D+AS+L +AI+YLK+L
Sbjct: 310 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKEL 352
>TFE3_MOUSE (Q64092) Transcription factor E3 (Fragment)
Length = 446
Score = 48.9 bits (115), Expect = 3e-06
Identities = 29/89 (32%), Positives = 52/89 (57%), Gaps = 7/89 (7%)
Query: 18 LKNDEGSELPSSK---AAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSN 74
+ N +ELP+ K + ++ K + + HNL E+RRR IN+++K L LIP SN
Sbjct: 191 VSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSN 250
Query: 75 ----KTDKASMLDEAIEYLKQLQLQVQVS 99
+ +K ++L +++Y+++LQ + Q S
Sbjct: 251 DPEMRWNKGTILKASVDYIRKLQKEQQRS 279
>TFEB_MOUSE (Q9R210) Transcription factor EB
Length = 475
Score = 48.5 bits (114), Expect = 5e-06
Identities = 24/68 (35%), Positives = 43/68 (62%), Gaps = 4/68 (5%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD----KASMLDEAIEYLKQ 91
R+ +K + + HNL E+RRR IN+++K L LIP +N D K ++L +++Y+++
Sbjct: 227 RALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRR 286
Query: 92 LQLQVQVS 99
+Q +Q S
Sbjct: 287 MQKDLQKS 294
>TFEB_HUMAN (P19484) Transcription factor EB
Length = 476
Score = 48.5 bits (114), Expect = 5e-06
Identities = 24/68 (35%), Positives = 43/68 (62%), Gaps = 4/68 (5%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTD----KASMLDEAIEYLKQ 91
R+ +K + + HNL E+RRR IN+++K L LIP +N D K ++L +++Y+++
Sbjct: 228 RALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRR 287
Query: 92 LQLQVQVS 99
+Q +Q S
Sbjct: 288 MQKDLQKS 295
>SRE2_HUMAN (Q12772) Sterol regulatory element binding protein-2
(SREBP-2) (Sterol regulatory element-binding
transcription factor 2)
Length = 1141
Score = 48.1 bits (113), Expect = 6e-06
Identities = 31/89 (34%), Positives = 53/89 (58%), Gaps = 8/89 (8%)
Query: 30 KAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSN-KTDKASMLDEAIEY 88
K PP+ +R+ HN+ EKR RS IN+K+ L++L+ ++ K K+ +L +AI+Y
Sbjct: 321 KQLEPPKEGERRTT----HNIIEKRYRSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDY 376
Query: 89 LKQLQL---QVQVSFLSLKMNNQTLKHVK 114
+K LQ +++ + LK+ NQ K +K
Sbjct: 377 IKYLQQVNHKLRQENMVLKLANQKNKLLK 405
>SRE2_CRIGR (Q60429) Sterol regulatory element binding protein-2
(SREBP-2) (Sterol regulatory element-binding
transcription factor 2)
Length = 1139
Score = 48.1 bits (113), Expect = 6e-06
Identities = 31/89 (34%), Positives = 53/89 (58%), Gaps = 8/89 (8%)
Query: 30 KAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSN-KTDKASMLDEAIEY 88
K PP+ +R+ HN+ EKR RS IN+K+ L++L+ ++ K K+ +L +AI+Y
Sbjct: 319 KQLEPPKEGERRTT----HNIIEKRYRSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDY 374
Query: 89 LKQLQL---QVQVSFLSLKMNNQTLKHVK 114
+K LQ +++ + LK+ NQ K +K
Sbjct: 375 IKYLQQVNHKLRQENMVLKLANQKNKLLK 403
>TFE3_HUMAN (P19532) Transcription factor E3
Length = 743
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/89 (31%), Positives = 52/89 (57%), Gaps = 7/89 (7%)
Query: 18 LKNDEGSELPSSK---AAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSN 74
+ N +ELP+ K + ++ K + + HNL E+RRR IN+++K L LIP S+
Sbjct: 318 VSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSS 377
Query: 75 ----KTDKASMLDEAIEYLKQLQLQVQVS 99
+ +K ++L +++Y+++LQ + Q S
Sbjct: 378 DPEMRWNKGTILKASVDYIRKLQKEQQRS 406
>MYCN_CHICK (P18444) N-myc proto-oncogene protein
Length = 441
Score = 47.0 bits (110), Expect = 1e-05
Identities = 29/96 (30%), Positives = 49/96 (50%), Gaps = 7/96 (7%)
Query: 27 PSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKAS---MLD 83
P SK++ P S S+ S HN+ E++RR+ + L++ +P K +KA+ +L
Sbjct: 342 PKSKSSSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILK 401
Query: 84 EAIEYLKQLQLQVQVSFLSLK----MNNQTLKHVKY 115
+A EY+ LQ + Q L + Q LK ++Y
Sbjct: 402 KATEYVHSLQAEEQKLLLEKEKLQARQQQLLKKIEY 437
>SRE1_HUMAN (P36956) Sterol regulatory element binding protein-1
(SREBP-1) (Sterol regulatory element-binding
transcription factor 1)
Length = 1147
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/94 (32%), Positives = 52/94 (54%), Gaps = 8/94 (8%)
Query: 22 EGSELPSSKAAP---PPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSN-KTD 77
+ +LP ++ A P S+ R HN EKR RS IN+K+ L++L+ + K +
Sbjct: 299 DAEKLPINRLAAGSKAPASAQSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLN 358
Query: 78 KASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLK 111
K+++L +AI+Y++ LQ Q LK N +L+
Sbjct: 359 KSAVLRKAIDYIRFLQHSNQ----KLKQENLSLR 388
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,270,489
Number of Sequences: 164201
Number of extensions: 519341
Number of successful extensions: 2746
Number of sequences better than 10.0: 261
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 2590
Number of HSP's gapped (non-prelim): 276
length of query: 141
length of database: 59,974,054
effective HSP length: 99
effective length of query: 42
effective length of database: 43,718,155
effective search space: 1836162510
effective search space used: 1836162510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC149211.1