BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149206.10 - phase: 0 
         (427 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RNH_VIBVU (Q8DBD5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)            31  5.3
Y865_TREPA (O83837) Hypothetical UPF0164 protein TP0865 precursor      30  9.1

>RNH_VIBVU (Q8DBD5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)
          Length = 155

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 271 MKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKEL 330
           ++I  DGS +G+P  G  GV+ R  Q       AQ     T    E  A + A++  KE 
Sbjct: 5   VEIFTDGSCLGNPGPGGYGVVLRYKQVE--KTLAQGYRLTTNNRMEMMATIVALQALKE- 61

Query: 331 HLTNIWIETDS 341
              N+ + TDS
Sbjct: 62  -PCNVILTTDS 71


>Y865_TREPA (O83837) Hypothetical UPF0164 protein TP0865 precursor
          Length = 479

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 298 MFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNI-WIETDSVNVIRAFHFNTGVPW 356
           ++ G   +N+G +  ++A  S    ++   + +H TN  +I   +   IR F F TG+ W
Sbjct: 270 LWVGGTVKNVGLSVEVDASNSGS--SMSGGRTVHATNSSFILACAYQPIRWFLFGTGIEW 327

Query: 357 KMHIR 361
           K +++
Sbjct: 328 KYNVQ 332


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,826,026
Number of Sequences: 164201
Number of extensions: 2162313
Number of successful extensions: 5623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5623
Number of HSP's gapped (non-prelim): 2
length of query: 427
length of database: 59,974,054
effective HSP length: 113
effective length of query: 314
effective length of database: 41,419,341
effective search space: 13005673074
effective search space used: 13005673074
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)