BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.3 + phase: 0 /pseudo
         (523 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VE1_HPV28 (P50763) Replication protein E1                              34  0.81
PO21_POPJA (Q03273) Retrovirus-related Pol polyprotein from type...    31  9.0

>VE1_HPV28 (P50763) Replication protein E1
          Length = 662

 Score = 34.3 bits (77), Expect = 0.81
 Identities = 13/42 (30%), Positives = 25/42 (58%)

Query: 393 ECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDMLTSQE 434
           +C  LL+T ++  LE DRW +L  +++ +T +  + + T  E
Sbjct: 571 KCPPLLITTNINPLEDDRWKYLRSRVQLFTFKNKFPLTTQGE 612


>PO21_POPJA (Q03273) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 445

 Score = 30.8 bits (68), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 471 NLADRGITFV--EDRICVTGCGHVEDTTHMFLSCPI 504
           NL   G+ ++  E R C  GC  VE  +H+  +CP+
Sbjct: 190 NLPTMGLPYIPRERRRCRAGCERVESVSHILQACPV 225


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.364    0.164    0.688 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,012,486
Number of Sequences: 164201
Number of extensions: 1816317
Number of successful extensions: 9229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9228
Number of HSP's gapped (non-prelim): 2
length of query: 523
length of database: 59,974,054
effective HSP length: 115
effective length of query: 408
effective length of database: 41,090,939
effective search space: 16765103112
effective search space used: 16765103112
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 68 (30.8 bits)