BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.14 - phase: 0 /pseudo
         (890 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...    55  6e-07
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...    42  0.009
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type...    37  0.30
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               37  0.30
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               35  0.88

>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score = 55.5 bits (132), Expect = 6e-07
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 35  PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
           P R+I +N  +  +++HF +   R       L LD  KA+DR+D  YL   +    F  +
Sbjct: 563 PGRTIFDNVFLIRDLLHFAR---RTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQ 619

Query: 95  WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHL 139
           ++ ++     S +  V +N     P+  GRG+RQG PLS   Y L
Sbjct: 620 FVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSL 664


>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 42  NAMVAIEVIHFMKTKTRGQDK-YVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWMV 100
           N   +I VIH++    + +DK ++ + LD  KA+D++   ++ +++ + G    ++  + 
Sbjct: 601 NIRKSINVIHYIN---KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIK 657

Query: 101 VSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHL 139
                   N+ VN E +  + L  G RQG PLS   +++
Sbjct: 658 AIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNI 696


>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 606

 Score = 36.6 bits (83), Expect = 0.30
 Identities = 19/89 (21%), Positives = 39/89 (43%)

Query: 51  HFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWMVVSTESVDYNV 110
           H++K +      Y  + LDI KA+D +    +   M   G       +++ +      N+
Sbjct: 11  HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNI 70

Query: 111 LVNAEHVGPVILGRGLRQGGPLSLSFYHL 139
           +V       + +  G++QG PLS   +++
Sbjct: 71  VVGGRTTNKIYIRNGVKQGDPLSPVLFNI 99


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 36.6 bits (83), Expect = 0.30
 Identities = 22/93 (23%), Positives = 47/93 (49%), Gaps = 4/93 (4%)

Query: 42  NAMVAIEVI-HFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWMV 100
           N   +I +I H  +TK      ++ + +D  KA+D++   ++ + + K+G    +++ + 
Sbjct: 574 NIRKSINIIQHINRTK---DTNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIR 630

Query: 101 VSTESVDYNVLVNAEHVGPVILGRGLRQGGPLS 133
              +    N+++N + +    L  G RQG PLS
Sbjct: 631 AIYDKPTANIILNGQKLEAPPLKTGTRQGCPLS 663


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 35.0 bits (79), Expect = 0.88
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 42  NAMVAIEVI-HFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQWMV 100
           N   +I VI H  K K +    ++ L +D  KA+D +   ++   + K+G    +++ + 
Sbjct: 574 NIRKSINVIQHINKLKNKD---HMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIE 630

Query: 101 VSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHL 139
                   N+++N   +    L  G RQG PLS   +++
Sbjct: 631 AIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNI 669


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.368    0.164    0.641 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,634,134
Number of Sequences: 164201
Number of extensions: 2792639
Number of successful extensions: 11146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11139
Number of HSP's gapped (non-prelim): 6
length of query: 890
length of database: 59,974,054
effective HSP length: 119
effective length of query: 771
effective length of database: 40,434,135
effective search space: 31174718085
effective search space used: 31174718085
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 70 (31.6 bits)