BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149204.7 + phase: 0
(600 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YM42_YEAST (Q03214) Hypothetical 162.7 kDa protein in SIP18-SPT2... 45 5e-04
JD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (S... 40 0.013
JD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (S... 40 0.023
JD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (S... 40 0.023
JD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (S... 40 0.023
RBB2_HUMAN (P29375) Retinoblastoma-binding protein 2 (RBBP-2) 39 0.030
OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein) 39 0.030
SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated, actin-de... 37 0.19
RRP2_INBP9 (O36432) RNA-directed RNA polymerase subunit P2 (EC 2... 37 0.19
RRP2_INBSI (P11136) RNA-directed RNA polymerase subunit P2 (EC 2... 36 0.25
RBB1_HUMAN (P29374) Retinoblastoma-binding protein 1 (RBBP-1) 36 0.33
AR3A_MOUSE (Q62431) AT-rich interactive domain-containing protei... 35 0.43
RRP2_INBAC (P13873) RNA-directed RNA polymerase subunit P2 (EC 2... 35 0.56
AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protei... 35 0.56
RRP2_INBAD (P13874) RNA-directed RNA polymerase subunit P2 (EC 2... 35 0.73
YP83_CAEEL (Q09441) Hypothetical protein C08B11.3 in chromosome II 34 1.3
YJ9C_YEAST (P47166) Hypothetical 81.2 kDa protein in NMD5-HOM6 i... 33 1.6
PERO_DROME (Q01603) Peroxidase precursor (EC 1.11.1.7) (DmPO) 33 2.8
MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [... 32 3.6
MAPB_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Ne... 32 4.8
>YM42_YEAST (Q03214) Hypothetical 162.7 kDa protein in SIP18-SPT21
intergenic region
Length = 1411
Score = 45.1 bits (105), Expect = 5e-04
Identities = 21/57 (36%), Positives = 36/57 (62%), Gaps = 4/57 (7%)
Query: 5 EQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKV----GSSVKLVYSKYL 57
++TLDLY+L VK +GG++ VC+ +LW +G E G ++ +S++ Y+K L
Sbjct: 215 KRTLDLYRLRSCVKLRGGFNAVCEKKLWAQIGRELGYSGRIMSSLSTSLRSAYAKIL 271
>JD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY
protein) (Histocompatibility Y antigen) (H-Y)
Length = 1548
Score = 40.4 bits (93), Expect = 0.013
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGE--EYGLGVKVGSSVKLVYSKYL 57
LDLY L +V ++GGY+ +CK+ W V + Y G +GS ++ Y + +
Sbjct: 110 LDLYSLNKIVMEEGGYEAICKDRRWARVAQRLNYPSGKNIGSLLRSHYERII 161
>JD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY
protein) (Histocompatibility Y antigen) (H-Y)
Length = 1539
Score = 39.7 bits (91), Expect = 0.023
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGE--EYGLGVKVGSSVKLVYSKYL 57
LDLY L +V ++GGY+ +CK+ W V + Y G +GS ++ Y + +
Sbjct: 110 LDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGSLLRSHYERII 161
>JD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX
protein) (Xe169 protein)
Length = 1554
Score = 39.7 bits (91), Expect = 0.023
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGE--EYGLGVKVGSSVKLVYSK 55
LDLY L +V ++GGY+ +CK+ W V + Y G +GS ++ Y +
Sbjct: 110 LDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYER 159
>JD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX
protein) (Xe169 protein)
Length = 1560
Score = 39.7 bits (91), Expect = 0.023
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGE--EYGLGVKVGSSVKLVYSK 55
LDLY L +V ++GGY+ +CK+ W V + Y G +GS ++ Y +
Sbjct: 110 LDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYER 159
>RBB2_HUMAN (P29375) Retinoblastoma-binding protein 2 (RBBP-2)
Length = 1722
Score = 39.3 bits (90), Expect = 0.030
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGL--GVKVGSSVKLVYSKYL 57
LDLY L +V KGG+++V K + W VG G G GS +K Y + L
Sbjct: 115 LDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERIL 166
>OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein)
Length = 2716
Score = 39.3 bits (90), Expect = 0.030
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 4 SEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKL 51
S+Q LDLY+L++ VK++GG+ V K++ W + G+G ++ L
Sbjct: 1028 SKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGASSSAAYTL 1075
>SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated,
actin-dependent regulator of chromatin subfamily F
member 1 (SWI-SNF complex protein p270) (B120)
Length = 1902
Score = 36.6 bits (83), Expect = 0.19
Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGV--KVGSSVKLVYSKYLSGLETPLK 65
LDLY+L++ VK+ GG V KN+ W + +G SS+K Y + L E ++
Sbjct: 666 LDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIE 725
Query: 66 NVVDGEFPKRDL 77
GE P D+
Sbjct: 726 R---GEDPPPDI 734
>RRP2_INBP9 (O36432) RNA-directed RNA polymerase subunit P2 (EC
2.7.7.48) (Polymerase acidic protein) (PA)
Length = 726
Score = 36.6 bits (83), Expect = 0.19
Identities = 61/222 (27%), Positives = 96/222 (42%), Gaps = 29/222 (13%)
Query: 44 KVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEG 103
K+G+S++L+ Y ++ +D E R L RLTELQAEL L + +
Sbjct: 138 KLGNSMELMIFSYNQDYSLSNESSLDEEGKGRVL--------SRLTELQAELSLKNLWQV 189
Query: 104 DVGDEVKSVYGCRKKLCDT-NRVKVVNPELNASELEKVYEYIDGRKSCGT---NKMKDTN 159
+G+E G KL T +R++ ++ S E + YID G N + +
Sbjct: 190 LIGEE-DVEKGIDFKLGQTISRLRDISVPAGFSNFEGMRSYIDNIDPKGAIERNLARMSP 248
Query: 160 LVSNMAKKVESEGL--VDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDG 217
LVS KK++ E L + + + + E V NA + +M D +AN G S
Sbjct: 249 LVSATPKKLKWEDLRPIGPHIYNHELPE------VPYNAFL-LMSDELGLANMTEGKSKK 301
Query: 218 SKSCAND------DANDSGDDVLMLDPSSVNRESFGRKRKRD 253
K+ A + D D +L++ N E+F K RD
Sbjct: 302 PKTLAKECLEKYSTLRDQTDPILIMKSEKAN-ENFLWKLWRD 342
>RRP2_INBSI (P11136) RNA-directed RNA polymerase subunit P2 (EC
2.7.7.48) (Polymerase acidic protein) (PA)
Length = 725
Score = 36.2 bits (82), Expect = 0.25
Identities = 61/222 (27%), Positives = 96/222 (42%), Gaps = 29/222 (13%)
Query: 44 KVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEG 103
K+G+S++L+ Y ++ +D E R L RLTELQAEL L + +
Sbjct: 138 KLGNSMELMIFSYNQDYSLSNESSLDEEGKGRVL--------SRLTELQAELSLKNLWQV 189
Query: 104 DVGDEVKSVYGCRKKLCDT-NRVKVVNPELNASELEKVYEYIDGRKSCGT---NKMKDTN 159
+G+E G KL T +R++ ++ S E + YID G N + +
Sbjct: 190 LIGEE-DIEKGIDFKLGQTISRLRDISVPAGFSNFEGMRSYIDNIDPKGAIERNLARMSP 248
Query: 160 LVSNMAKKVESEGL--VDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDG 217
LVS KK++ E L + + + + E V NA + +M D +AN G S
Sbjct: 249 LVSVTPKKLKWEDLRPIGPHIYNHELPE------VPYNAFL-LMSDELGLANMTEGKSKK 301
Query: 218 SKSCAND------DANDSGDDVLMLDPSSVNRESFGRKRKRD 253
K+ A + D D +L++ N E+F K RD
Sbjct: 302 PKTLAKECLEKYSTLRDQTDPILIMKSEKAN-ENFLWKLWRD 342
>RBB1_HUMAN (P29374) Retinoblastoma-binding protein 1 (RBBP-1)
Length = 1257
Score = 35.8 bits (81), Expect = 0.33
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 32/189 (16%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGV---KVGSSVKLVYSKYLSGLETPL 64
L+L+KLF +V +GG D + +W + + G+ + ++K Y KYL G E
Sbjct: 341 LNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNLKTAYRKYLYGFEEYC 400
Query: 65 KN------VVDGEFP-----KRDL---VGDRVKFGER--LTELQAELV--LDDYGEGDVG 106
++ V P K+DL + + +K + LTE+++E +D E +
Sbjct: 401 RSANIQFRTVHHHEPKVKEEKKDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESERE 460
Query: 107 D-EVKSVYGCRKKLCDTNRVKVVNPELNASELEKVYEYIDGRKSCGTNKMKDTNLVSNMA 165
+ E+KS G R+ D N +K E+E+ E + + + KD + A
Sbjct: 461 EIELKSPRGRRRIARDVNSIK--------KEIEE--EKTEDKLKDNDTENKDVDDDYETA 510
Query: 166 KKVESEGLV 174
+K E+E L+
Sbjct: 511 EKKENELLL 519
>AR3A_MOUSE (Q62431) AT-rich interactive domain-containing protein
3A (ARID domain-containing protein 3A) (Dead ringer
like-1 protein) (B-cell regulator of IgH transcription)
(Bright)
Length = 601
Score = 35.4 bits (80), Expect = 0.43
Identities = 27/95 (28%), Positives = 43/95 (44%), Gaps = 12/95 (12%)
Query: 4 SEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGS---SVKLVYSKYL--- 57
++Q LDL+ L+++V +KGG V +LW + + L + S +++ Y KYL
Sbjct: 271 AKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 330
Query: 58 ----SGLETPLKNVVDGEFPKRDLVGDRVKFGERL 88
GL +P N + G R FG L
Sbjct: 331 ECERRGLSSP--NELQAAIDSNRREGRRQSFGGSL 363
>RRP2_INBAC (P13873) RNA-directed RNA polymerase subunit P2 (EC
2.7.7.48) (Polymerase acidic protein) (PA)
Length = 726
Score = 35.0 bits (79), Expect = 0.56
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 29/222 (13%)
Query: 44 KVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEG 103
K+G+S++L+ Y ++ +D E R L RLTELQAEL L + +
Sbjct: 138 KLGNSMELMIFSYNQDYSLSNESSLDEEGKGRVL--------SRLTELQAELSLKNLWQV 189
Query: 104 DVGDEVKSVYGCRKKLCDT-NRVKVVNPELNASELEKVYEYIDGRKSCGT---NKMKDTN 159
+G+E G KL T ++++ ++ S E + YID G N + +
Sbjct: 190 LIGEE-DIEKGIDFKLGQTISKLRDISVPAGFSNFEGMRSYIDNIDPKGAIERNLARMSP 248
Query: 160 LVSNMAKKVESEGL--VDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDG 217
LVS KK++ E L + + + + E V NA + +M D +AN G S
Sbjct: 249 LVSVTPKKLKWEDLRPIGPHIYNHELPE------VPYNAFL-LMSDELGLANMTEGKSKK 301
Query: 218 SKSCAND------DANDSGDDVLMLDPSSVNRESFGRKRKRD 253
K+ A + D D +L++ N E+F K RD
Sbjct: 302 PKTLAKECLEKYSTLRDQTDPILIMKSEKAN-ENFLWKLWRD 342
>AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protein
3A (ARID domain-containing protein 3A) (B-cell regulator
of IgH transcription) (Bright) (E2F binding protein 1)
Length = 593
Score = 35.0 bits (79), Expect = 0.56
Identities = 27/95 (28%), Positives = 42/95 (43%), Gaps = 12/95 (12%)
Query: 4 SEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGS---SVKLVYSKYL--- 57
++Q LDL+ L+++V +KGG V +LW + + L + S +++ Y KYL
Sbjct: 266 AKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 325
Query: 58 ----SGLETPLKNVVDGEFPKRDLVGDRVKFGERL 88
GL P N + G R FG L
Sbjct: 326 ECEKRGLSNP--NELQAAIDSNRREGRRQSFGGSL 358
>RRP2_INBAD (P13874) RNA-directed RNA polymerase subunit P2 (EC
2.7.7.48) (Polymerase acidic protein) (PA)
Length = 726
Score = 34.7 bits (78), Expect = 0.73
Identities = 60/220 (27%), Positives = 95/220 (42%), Gaps = 25/220 (11%)
Query: 44 KVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEG 103
K+G+S++L+ Y ++ +D E R L RLTELQAEL L + +
Sbjct: 138 KLGNSMELMIFSYNQDYSLSNEHSLDEEGKGRVL--------SRLTELQAELSLKNLWQV 189
Query: 104 DVGDEVKSVYGCRKKLCDT-NRVKVVNPELNASELEKVYEYIDGRKSCGT---NKMKDTN 159
+G+E G KL T ++++ ++ S E + YID G N + +
Sbjct: 190 LIGEE-DIEKGIDFKLGQTISKLRDISVPAGFSNFEGMRSYIDNIDPKGAIERNLARMSP 248
Query: 160 LVSNMAKKVESEGLVDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDGSK 219
LVS KK++ E L + ++E V NA + +M D +AN G S K
Sbjct: 249 LVSVTPKKLKWEDLRPI-GPHIYSHEL---PEVPYNAFL-LMSDELGLANMTEGKSKKPK 303
Query: 220 SCAND------DANDSGDDVLMLDPSSVNRESFGRKRKRD 253
+ A + D D +L++ N E+F K RD
Sbjct: 304 TLAKECLEKYSTLRDQTDPILIMKSEKAN-ENFLWKLWRD 342
>YP83_CAEEL (Q09441) Hypothetical protein C08B11.3 in chromosome II
Length = 1244
Score = 33.9 bits (76), Expect = 1.3
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 8 LDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKV---GSSVKLVYSKYLSGLE 61
++LY+L+ V GG+ V ++ W + E +G + ++K++Y +YLS E
Sbjct: 56 VNLYRLYDTVMALGGWQKVAASDKWSDIAEMFGCKDDILCGDHAIKIIYMRYLSKFE 112
>YJ9C_YEAST (P47166) Hypothetical 81.2 kDa protein in NMD5-HOM6
intergenic region
Length = 707
Score = 33.5 bits (75), Expect = 1.6
Identities = 36/145 (24%), Positives = 63/145 (42%), Gaps = 17/145 (11%)
Query: 133 NASELEKVYEYIDGRKSCGTNKMKDTN----LVSNMAKKV-ESEGLVDVLMQDCKTNETS 187
N +EL+ +Y I G+ + TNK+KD + + + K + E + L+ +L Q T
Sbjct: 219 NYNELQSLYHNIQGQLAEATNKLKDADKQKESLETLEKNIKEKDDLITILQQSLDNMRTL 278
Query: 188 LRK----LVNQNAAME--IMDDVSDVANSMPGLS-DGSKSCANDDANDSGDDVLMLDPSS 240
L K + A++ +D V+ + + L + S N DA + D + D S
Sbjct: 279 LEKEKSEFQTEKKALQEATVDQVTTLETKLEQLRIELDSSTQNLDAKSNRD--FVDDQQS 336
Query: 241 VNRE---SFGRKRKRDDLMSEMQSW 262
+ SF R ++ L S +W
Sbjct: 337 YEEKQHASFQYNRLKEQLESSKANW 361
>PERO_DROME (Q01603) Peroxidase precursor (EC 1.11.1.7) (DmPO)
Length = 690
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 37 EEYGLGVKVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGER 87
E+ GLGV +L+ KY G+ P ++V E P LV V FGE+
Sbjct: 116 EQPGLGVANSKYGRLLTPKYADGISAPTRSVTGDELPSARLV-SLVAFGEQ 165
>MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B)
[Contains: MAP1 light chain LC1]
Length = 2468
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 213 GLSDGSKSCANDDANDSGDDVLMLDPSSVNRESFGRKRKRDDLMSEMQSWVIRTAKNPCD 272
G S+GSK+ A D + + + PSS+ + F R RD SE+++ K+
Sbjct: 1185 GFSEGSKTDATDGKDYNASASTISPPSSMEEDKFSRSALRDAYCSEVKASTTLDIKDSIS 1244
Query: 273 PVLGSMPEKSK 283
V SK
Sbjct: 1245 AVSSEKVSPSK 1255
>MAPB_RAT (P15205) Microtubule-associated protein 1B (MAP 1B)
(Neuraxin) [Contains: MAP1 light chain LC1]
Length = 2459
Score = 32.0 bits (71), Expect = 4.8
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 207 VANSMPGLSDGSKSCANDDANDSGDDVLMLDPSSVNRESFGRKRKRD 253
V S GLSDGSK+ A D + + + PSS+ + F + RD
Sbjct: 1171 VVASFNGLSDGSKTDATDGRDYNASASTISPPSSMEEDKFSKSALRD 1217
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,053,553
Number of Sequences: 164201
Number of extensions: 3334838
Number of successful extensions: 6407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6389
Number of HSP's gapped (non-prelim): 35
length of query: 600
length of database: 59,974,054
effective HSP length: 116
effective length of query: 484
effective length of database: 40,926,738
effective search space: 19808541192
effective search space used: 19808541192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC149204.7