BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.3 - phase: 0
(257 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VP61_NPVAC (Q03209) 61 kDa protein 35 0.14
RUS2_MOUSE (Q80U22) RUN and SH3 domain containing protein 2 35 0.14
NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B)... 35 0.14
NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B)... 35 0.14
SUIS_RAT (P23739) Sucrase-isomaltase, intestinal [Contains: Sucr... 34 0.40
LPRE_MYCTU (P65312) Putative lipoprotein lprE precursor 34 0.40
LPRE_MYCBO (P65313) Putative lipoprotein lprE precursor 34 0.40
LMP1_MOUSE (P11438) Lysosome-associated membrane glycoprotein 1 ... 34 0.40
EB2A_BRARE (O73874) Ephrin-B2a precursor 33 0.52
MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2) 33 0.68
D4DR_RAT (P30729) D(4) dopamine receptor (D(2C) dopamine receptor) 33 0.88
TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain binding prote... 32 1.2
LMP1_RAT (P14562) Lysosome-associated membrane glycoprotein 1 pr... 32 1.2
GPBA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precurs... 32 1.2
GK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyp... 32 1.2
DOC1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa ... 32 1.2
TFE3_HUMAN (P19532) Transcription factor E3 32 1.5
PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associa... 32 1.5
MMS3_MYCTU (P65378) Putative membrane protein MMPS3 32 1.5
MMS3_MYCBO (P65379) Putative membrane protein MMPS3 32 1.5
>VP61_NPVAC (Q03209) 61 kDa protein
Length = 543
Score = 35.4 bits (80), Expect = 0.14
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 14 PPPSPTTG---QPPPSPASVNTCPPTVRMPINLQPA 46
PPPSP PPP P S++ PP MP QPA
Sbjct: 186 PPPSPVPNIPAPPPPPPPSMSELPPAPPMPTEPQPA 221
Score = 29.6 bits (65), Expect = 7.5
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 ESQTTTGQPPPSPTTGQPPPSPA--------SVNTCPPTVRMPINLQPANSKSKQNSTNK 57
E + + PPP P PP PA S PP V +P + P + S N ++
Sbjct: 270 EPKPPSASPPPPPPPPPPPAPPAPPPMVDLSSAPPPPPLVDLPSEMLPPPAPSLSNVLSE 329
Query: 58 L 58
L
Sbjct: 330 L 330
>RUS2_MOUSE (Q80U22) RUN and SH3 domain containing protein 2
Length = 1514
Score = 35.4 bits (80), Expect = 0.14
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 3 SLHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
S S +T+ PPP T SP S +TCPPTVR + QP K
Sbjct: 787 STDSSASTSCSPPPEQGTAADSVSPWS-HTCPPTVRPATSQQPPKEDQK 834
>NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
transcription factor) (CTF) (TGGCA-binding protein)
Length = 570
Score = 35.4 bits (80), Expect = 0.14
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 21/92 (22%)
Query: 2 GSLHESQTTTGQPPPSP----TTGQPPPSPASVNTCPPTVRMPINLQPANS--------- 48
G H +T PPPSP T PP+P+S + PT+R P +L P ++
Sbjct: 349 GVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFS-HPTIRYPPHLNPQDTLKNYVPSYD 407
Query: 49 -----KSKQNSTNKLFGKFRSMFRSFPIIVPS 75
S+ NS+ ++ GK F P++ PS
Sbjct: 408 PSSPQTSQPNSSGQVVGKVPGHFT--PVLAPS 437
>NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
transcription factor) (CTF) (TGGCA-binding protein)
Length = 561
Score = 35.4 bits (80), Expect = 0.14
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 21/92 (22%)
Query: 2 GSLHESQTTTGQPPPSP----TTGQPPPSPASVNTCPPTVRMPINLQPANS--------- 48
G H +T PPPSP T PP+P+S + PT+R P +L P ++
Sbjct: 349 GVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFS-HPTIRYPPHLNPQDTLKNYVPSYD 407
Query: 49 -----KSKQNSTNKLFGKFRSMFRSFPIIVPS 75
S+ NS+ ++ GK F P++ PS
Sbjct: 408 PSSPQTSQPNSSGQVVGKVPGHFT--PVLAPS 437
>SUIS_RAT (P23739) Sucrase-isomaltase, intestinal [Contains: Sucrase
(EC 3.2.1.48); Isomaltase (EC 3.2.1.10)]
Length = 1840
Score = 33.9 bits (76), Expect = 0.40
Identities = 41/174 (23%), Positives = 68/174 (38%), Gaps = 27/174 (15%)
Query: 9 TTTGQPPPSPTTGQPPPSPA--SVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRSMF 66
T+ P +PT+ P S + S CPP PIN + N +Q+ T + + +
Sbjct: 46 TSNSTPTSTPTSTSTPTSTSTPSPGKCPPEQGEPIN-ERINCIPEQHPTKAICEERGCCW 104
Query: 67 RSF-PIIVPSCKMPTMNGNHRTSETIIHGGIRIT------GTLFGYRKARVNLAFQEDS- 118
R + ++P C +G + S T + G++ T TLFG V L Q +
Sbjct: 105 RPWNNTVIPWCFFADNHGYNAESITNENAGLKATLNRIPSPTLFGEDIKSVILTTQTQTG 164
Query: 119 ----------------KCHPFLLLELAIPTGKLLQDMGMGLNRIALECEKHSSN 156
H F+ E IP L D+ + N +++ + S+N
Sbjct: 165 NRFRFKITDPNNKRYEVPHQFVKEETGIPAADTLYDVQVSENPFSIKVIRKSNN 218
>LPRE_MYCTU (P65312) Putative lipoprotein lprE precursor
Length = 202
Score = 33.9 bits (76), Expect = 0.40
Identities = 24/102 (23%), Positives = 43/102 (41%), Gaps = 10/102 (9%)
Query: 1 MGSLHESQTTTGQPPPSPTTGQP------PPSPASVNTCPPTVRMPINLQPANSKSKQN- 53
+ + H + ++ PPS T P P P +VN PT+ ++ P + +S+Q
Sbjct: 46 LSTAHPAPPSSEPSPPSATAAPPSNHSAAPVDPCAVNLASPTIAKVVSELPRDPRSEQPW 105
Query: 54 STNKLFGKFRSMFRSFPIIVPSCKMPTMNGNHRTSETIIHGG 95
+ L G + + +++ K T GN T + H G
Sbjct: 106 NPEPLAGNYNECAQLSAVVI---KANTNAGNPTTRAVMFHLG 144
>LPRE_MYCBO (P65313) Putative lipoprotein lprE precursor
Length = 202
Score = 33.9 bits (76), Expect = 0.40
Identities = 24/102 (23%), Positives = 43/102 (41%), Gaps = 10/102 (9%)
Query: 1 MGSLHESQTTTGQPPPSPTTGQP------PPSPASVNTCPPTVRMPINLQPANSKSKQN- 53
+ + H + ++ PPS T P P P +VN PT+ ++ P + +S+Q
Sbjct: 46 LSTAHPAPPSSEPSPPSATAAPPSNHSAAPVDPCAVNLASPTIAKVVSELPRDPRSEQPW 105
Query: 54 STNKLFGKFRSMFRSFPIIVPSCKMPTMNGNHRTSETIIHGG 95
+ L G + + +++ K T GN T + H G
Sbjct: 106 NPEPLAGNYNECAQLSAVVI---KANTNAGNPTTRAVMFHLG 144
>LMP1_MOUSE (P11438) Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (LGP-A) (LGP-120) (CD107A) (P2B)
Length = 406
Score = 33.9 bits (76), Expect = 0.40
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 2 GSLHESQTTTGQPPPSPTTGQPPPSPASVNTCP 34
G+ + +T Q PSPTTG P PSP V T P
Sbjct: 176 GNFSKEETHCTQDGPSPTTGPPSPSPPLVPTNP 208
>EB2A_BRARE (O73874) Ephrin-B2a precursor
Length = 332
Score = 33.5 bits (75), Expect = 0.52
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 198 VSVAVGELPSDMSDPQDGELSYMRAHFERVIGSKDSETYYMMMPDGNSNGPE 249
+ + VG+ PSD P+D SY H + +G KDS++ ++ PD + +G +
Sbjct: 157 IIMKVGQNPSDPISPKDYPTSYPPKHPD--LGGKDSKSNEVLKPDASPHGED 206
>MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2)
Length = 5179
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 9 TTTGQPPPSPTTGQPP---PSPASVNTCPPTVRMPINLQPANSKSKQNST 55
TTT PPP+ TT PP PSP + T P + P + S +T
Sbjct: 1638 TTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITT 1687
Score = 32.7 bits (73), Expect = 0.88
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 9 TTTGQPPPSPTTGQPP---PSPASVNT-CPPTV 37
TTT PPP+ TT PP PSP + T PPT+
Sbjct: 1559 TTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTI 1591
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/45 (37%), Positives = 19/45 (41%), Gaps = 6/45 (13%)
Query: 7 SQTTTGQPPP------SPTTGQPPPSPASVNTCPPTVRMPINLQP 45
S TTT PPP SPTT PP+ P T P+ P
Sbjct: 1716 SSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTP 1760
Score = 31.2 bits (69), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 4/36 (11%)
Query: 9 TTTGQPPPSPTTGQPPPS----PASVNTCPPTVRMP 40
TTT PPP+ TT PP + P + T PP P
Sbjct: 1403 TTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTP 1438
Score = 30.4 bits (67), Expect = 4.4
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 9 TTTGQPP---PSPTTGQPPPSPASVNTCPPT 36
TTT PP PSP T P P S T PPT
Sbjct: 1529 TTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1559
Score = 30.0 bits (66), Expect = 5.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 9 TTTGQPPPSPTTGQPPPS-----PASVNTCPPTVRMP 40
TTT PP+ TT PPP+ P + T PP P
Sbjct: 1582 TTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTP 1618
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 9 TTTGQPPPSPTTGQPPPS-----PASVNTCPPT 36
TTT PP TT PP + PAS T PPT
Sbjct: 1488 TTTTTTPPPTTTPSPPMTTPITPPASTTTLPPT 1520
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 9 TTTGQPP----PSPTTGQPPPSPASVNTCPPT 36
TTT PP PSP T P P S T PPT
Sbjct: 1607 TTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1638
Score = 29.6 bits (65), Expect = 7.5
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 9 TTTGQPP---PSPTTGQPPPSPASVNTCPPT 36
TTT PP PSP T P P + T PPT
Sbjct: 1467 TTTPSPPTTTPSPPTTTPSPPTTTTTTPPPT 1497
Score = 29.3 bits (64), Expect = 9.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 9 TTTGQPPPS-----PTTGQPPPSPASVNTCPPT 36
TTT PPP+ PTT P P + T PPT
Sbjct: 1567 TTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPT 1599
>D4DR_RAT (P30729) D(4) dopamine receptor (D(2C) dopamine receptor)
Length = 387
Score = 32.7 bits (73), Expect = 0.88
Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 8/68 (11%)
Query: 14 PPPSP------TTGQPPPSPASVNTCPPTVRMP--INLQPANSKSKQNSTNKLFGKFRSM 65
PPPSP T P S S + C P +P QP S++ K+ G+ R
Sbjct: 253 PPPSPSLRTSPTVSSRPESDLSQSPCSPGCLLPDAALAQPPAPSSRRKRGAKITGRERKA 312
Query: 66 FRSFPIIV 73
R P++V
Sbjct: 313 MRVLPVVV 320
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain binding protein
7) (Fragment)
Length = 290
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 14 PPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRSMFRSFPIIV 73
PPP P PP PAS P + P++ P + KQ + L S R P +
Sbjct: 51 PPPLPPPSTSPPPPASPLPPPVSPPPPLSPPPYPAPEKQEESPPLVPATCSRKRGRPPLT 110
Query: 74 PS 75
PS
Sbjct: 111 PS 112
>LMP1_RAT (P14562) Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (120 kDa lysosomal membrane
glycoprotein) (LGP-120) (CD107A)
Length = 407
Score = 32.3 bits (72), Expect = 1.2
Identities = 15/29 (51%), Positives = 17/29 (57%)
Query: 6 ESQTTTGQPPPSPTTGQPPPSPASVNTCP 34
+ +T Q PSPTTG P PSP V T P
Sbjct: 181 KEETRCPQDQPSPTTGPPSPSPPLVPTNP 209
>GPBA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor
(Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA)
(GPIb-alpha) (CD42B-alpha) (CD42B) [Contains:
Glycocalicin]
Length = 626
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Query: 1 MGSLHESQT--TTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNST 55
M S+ S+T +T +P PSPTT +P P PA T P +P + + +T
Sbjct: 367 MESITFSKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPTT 423
Score = 31.6 bits (70), Expect = 2.0
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 10 TTGQPPPSPTTGQPPPSPASVNTCP-----PTV-RMPINLQPANSKSKQNSTNKLFGKFR 63
TT +P PSPTT +P PA T P PT+ P L A S ST K
Sbjct: 400 TTLEPTPSPTTPEPTSEPAPSPTTPEPTPIPTIATSPTILVSATSLITPKSTFLTTTKPV 459
Query: 64 SMFRSFPIIVPSCKMP 79
S+ S +P P
Sbjct: 460 SLLESTKKTIPELDQP 475
>GK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag
polyprotein (Gag polyprotein) [Contains: Matrix protein;
Capsid protein; Nucleocapsid protein]
Length = 622
Score = 32.3 bits (72), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 LHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQP 45
++ + G+ P + G P P S +T PP V+MP+ LQP
Sbjct: 151 IYPESSKLGEGGPE-SLGPSEPKPRSPSTPPPVVQMPVTLQP 191
>DOC1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa
protein downstream of CRK) (DOCK180) (Fragments)
Length = 1027
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 2 GSLHESQ----TTTGQPPPSPTTGQPPPSPASVNTCPP 35
G+L E+Q + T PPP P QPPP P+ PP
Sbjct: 974 GNLMENQDMMVSPTSPPPPPPQRQQPPPLPSKTPPPPP 1011
>TFE3_HUMAN (P19532) Transcription factor E3
Length = 743
Score = 32.0 bits (71), Expect = 1.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 1 MGSLHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMP 40
+G SQ T PPP P + QP P+P + +T PT P
Sbjct: 207 LGPKLASQALT--PPPGPASAQPLPAPEAAHTTGPTGSAP 244
>PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated
protein (PC2 glutamine/Q-rich-associated protein)
(TPA-inducible gene-1) (TIG-1) (Activator-recruited
cofactor 105 kDa component) (ARC105) (CTG repeat protein
7a)
Length = 788
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 MGSLHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQ 52
+G++ + + +GQPPP T+G P S A V+T P ++ + + +Q
Sbjct: 116 LGAMGQPMSLSGQPPPG-TSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQ 166
>MMS3_MYCTU (P65378) Putative membrane protein MMPS3
Length = 299
Score = 32.0 bits (71), Expect = 1.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 ESQTTTGQPPPSP----TTGQPPPSPASVNTCPPTVRMP 40
E+QT T PPP P TT PP + + PPT P
Sbjct: 170 ETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTP 208
>MMS3_MYCBO (P65379) Putative membrane protein MMPS3
Length = 299
Score = 32.0 bits (71), Expect = 1.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 ESQTTTGQPPPSP----TTGQPPPSPASVNTCPPTVRMP 40
E+QT T PPP P TT PP + + PPT P
Sbjct: 170 ETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTP 208
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,512,616
Number of Sequences: 164201
Number of extensions: 1489839
Number of successful extensions: 9653
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 8430
Number of HSP's gapped (non-prelim): 924
length of query: 257
length of database: 59,974,054
effective HSP length: 108
effective length of query: 149
effective length of database: 42,240,346
effective search space: 6293811554
effective search space used: 6293811554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Medicago: description of AC149197.3