BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149134.10 + phase: 0
(478 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KDD9_MOUSE (Q80UN1) Potassium channel tetramerisation domain con... 48 6e-05
KDD9_HUMAN (Q7L273) Potassium channel tetramerisation domain con... 48 6e-05
KCD3_RAT (Q62897) Potassium voltage-gated channel subfamily D me... 45 4e-04
KCD3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D ... 45 4e-04
KCD3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D ... 45 4e-04
KCD3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D ... 45 4e-04
KCD1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D ... 42 0.005
CIKL_DROME (P17971) Potassium voltage-gated channel protein Shal... 41 0.006
KCD1_MOUSE (Q03719) Potassium voltage-gated channel subfamily D ... 41 0.008
KDD2_HUMAN (Q14681) Potassium channel tetramerisation domain con... 40 0.017
KDD5_HUMAN (Q9NXV2) Potassium channel tetramerisation domain con... 39 0.023
KDD5_MOUSE (Q8VC57) Potassium channel tetramerisation domain con... 39 0.029
KD14_HUMAN (Q9BQ13) Potassium channel tetramerisation domain con... 39 0.029
KD13_MOUSE (Q8BGV7) Potassium channel tetramerisation domain con... 39 0.029
KD13_HUMAN (Q8WZ19) Potassium channel tetramerization domain con... 39 0.029
CIKW_DROME (P17972) Potassium voltage-gated channel protein Shaw... 37 0.086
KCB1_RABIT (Q9MZ19) Potassium voltage-gated channel subfamily B ... 37 0.11
KCB1_PIG (O18868) Potassium voltage-gated channel subfamily B me... 37 0.11
KCB1_HUMAN (Q14721) Potassium voltage-gated channel subfamily B ... 37 0.11
KCD2_RAT (Q63881) Potassium voltage-gated channel subfamily D me... 37 0.15
>KDD9_MOUSE (Q80UN1) Potassium channel tetramerisation domain
containing protein 9
Length = 339
Score = 47.8 bits (112), Expect = 6e-05
Identities = 41/108 (37%), Positives = 53/108 (48%), Gaps = 12/108 (11%)
Query: 16 TDRIKLNVGGKLFETTLSTIRSGGPDSLL---FALSNRFSNDPN---PVFIDRDPEIFSV 69
TD + LNVGG+ F TT ST+ + PDS+L F + N + IDR PE F
Sbjct: 88 TDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEP 147
Query: 70 FLSLLRTNHLPSTARRFSKQELADEALFYGIDS---HLRNA--TSPPP 112
L+ LR L + + +EA F+GIDS HL A S PP
Sbjct: 148 ILNYLRHGQL-IVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPP 194
>KDD9_HUMAN (Q7L273) Potassium channel tetramerisation domain
containing protein 9
Length = 389
Score = 47.8 bits (112), Expect = 6e-05
Identities = 41/108 (37%), Positives = 53/108 (48%), Gaps = 12/108 (11%)
Query: 16 TDRIKLNVGGKLFETTLSTIRSGGPDSLL---FALSNRFSNDPN---PVFIDRDPEIFSV 69
TD + LNVGG+ F TT ST+ + PDS+L F + N + IDR PE F
Sbjct: 88 TDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEP 147
Query: 70 FLSLLRTNHLPSTARRFSKQELADEALFYGIDS---HLRNA--TSPPP 112
L+ LR L + + +EA F+GIDS HL A S PP
Sbjct: 148 ILNYLRHGQL-IVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPP 194
>KCD3_RAT (Q62897) Potassium voltage-gated channel subfamily D
member 3 (Voltage-gated potassium channel subunit Kv4.3)
Length = 655
Score = 45.1 bits (105), Expect = 4e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLLRT 76
I LNV G+ F+T +T+ PD+LL + F + D F DRDPE+F L+ RT
Sbjct: 42 IVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 100
Query: 77 NHLPSTARRFSKQELADEALFYGI 100
L R DE FYGI
Sbjct: 101 GKL-HYPRYECISAYDDELAFYGI 123
>KCD3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D
member 3 (Voltage-gated potassium channel subunit Kv4.3)
Length = 655
Score = 45.1 bits (105), Expect = 4e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLLRT 76
I LNV G+ F+T +T+ PD+LL + F + D F DRDPE+F L+ RT
Sbjct: 42 IVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 100
Query: 77 NHLPSTARRFSKQELADEALFYGI 100
L R DE FYGI
Sbjct: 101 GKL-HYPRYECISAYDDELAFYGI 123
>KCD3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D
member 3 (Voltage-gated potassium channel subunit Kv4.3)
Length = 655
Score = 45.1 bits (105), Expect = 4e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLLRT 76
I LNV G+ F+T +T+ PD+LL + F + D F DRDPE+F L+ RT
Sbjct: 42 IVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 100
Query: 77 NHLPSTARRFSKQELADEALFYGI 100
L R DE FYGI
Sbjct: 101 GKL-HYPRYECISAYDDELAFYGI 123
>KCD3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D
member 3 (Voltage-gated potassium channel subunit Kv4.3)
Length = 655
Score = 45.1 bits (105), Expect = 4e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLLRT 76
I LNV G+ F+T +T+ PD+LL + F + D F DRDPE+F L+ RT
Sbjct: 42 IVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 100
Query: 77 NHLPSTARRFSKQELADEALFYGI 100
L R DE FYGI
Sbjct: 101 GKL-HYPRYECISAYDDELAFYGI 123
>KCD1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D
member 1 (Voltage-gated potassium channel subunit Kv4.1)
Length = 647
Score = 41.6 bits (96), Expect = 0.005
Identities = 29/82 (35%), Positives = 41/82 (49%), Gaps = 4/82 (4%)
Query: 21 LNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLLRTNH 78
+NV G+ FET +T+ PD+LL + F D F DRDP++F L+ RT
Sbjct: 44 VNVSGRRFETWKNTL-DRYPDTLLGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGR 102
Query: 79 LPSTARRFSKQELADEALFYGI 100
L R+ Q +E FYG+
Sbjct: 103 L-HCPRQECIQAFDEELAFYGL 123
>CIKL_DROME (P17971) Potassium voltage-gated channel protein Shal
(Shal2)
Length = 490
Score = 41.2 bits (95), Expect = 0.006
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 17 DRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRF--SNDPNPVFIDRDPEIFSVFLSLL 74
+++ +NV G+ FET +T+ PD+LL + F D F DRDP+IF L+
Sbjct: 41 EKLLINVSGRRFETWRNTLEKY-PDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYY 99
Query: 75 RTNHLPSTARRFSKQELA----DEALFYGI 100
RT L + K E +E F+GI
Sbjct: 100 RTGKL-----HYPKHECLTSYDEELAFFGI 124
>KCD1_MOUSE (Q03719) Potassium voltage-gated channel subfamily D
member 1 (Voltage-gated potassium channel subunit Kv4.1)
(mShal)
Length = 651
Score = 40.8 bits (94), Expect = 0.008
Identities = 29/82 (35%), Positives = 41/82 (49%), Gaps = 4/82 (4%)
Query: 21 LNVGGKLFETTLSTIRSGGPDSLLFALSNRFSNDPNP--VFIDRDPEIFSVFLSLLRTNH 78
+NV G+ FET +T+ PD+LL + F D F DRDP++F L+ RT
Sbjct: 44 VNVSGRRFETWKNTL-DRYPDTLLGSSEKEFFYDAESGEYFFDRDPDMFRHVLNFYRTGR 102
Query: 79 LPSTARRFSKQELADEALFYGI 100
L R+ Q +E FYG+
Sbjct: 103 L-HCPRQECIQAFDEELAFYGL 123
>KDD2_HUMAN (Q14681) Potassium channel tetramerisation domain
containing protein 2
Length = 263
Score = 39.7 bits (91), Expect = 0.017
Identities = 31/94 (32%), Positives = 45/94 (46%), Gaps = 9/94 (9%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALS-------NRFSNDPNPVFIDRDPEIFSVFL 71
++LNVGG F TT T+ P S L L + ++ IDRDP F L
Sbjct: 74 VRLNVGGTYFVTTRQTL-GREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPIL 132
Query: 72 SLLRTNHLPSTARRFSKQELADEALFYGIDSHLR 105
+ LR L T + +++ + +EA FY I S +R
Sbjct: 133 NYLRHGKLIIT-KELAEEGVLEEAEFYNIASLVR 165
>KDD5_HUMAN (Q9NXV2) Potassium channel tetramerisation domain
containing protein 5
Length = 234
Score = 39.3 bits (90), Expect = 0.023
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 14 NVTDRIKLNVGGKLFETTLSTIRSGGPDSLLFALS------NRFSNDPNPVFIDRDPEIF 67
+V+ ++LNVGG F TT T+ P S L+ L + ++ IDRDP F
Sbjct: 41 SVSKWVRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 99
Query: 68 SVFLSLLRTNHLPSTARRFSKQELADEALFYGIDSHLR 105
L+ LR L + +++ + +EA FY I S ++
Sbjct: 100 GPVLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLIK 136
>KDD5_MOUSE (Q8VC57) Potassium channel tetramerisation domain
containing protein 5
Length = 234
Score = 38.9 bits (89), Expect = 0.029
Identities = 30/97 (30%), Positives = 47/97 (47%), Gaps = 8/97 (8%)
Query: 15 VTDRIKLNVGGKLFETTLSTIRSGGPDSLLFALS------NRFSNDPNPVFIDRDPEIFS 68
V+ ++LNVGG F TT T+ P S L+ L + ++ IDRDP F
Sbjct: 42 VSKWVRLNVGGTYFLTTRQTL-CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 100
Query: 69 VFLSLLRTNHLPSTARRFSKQELADEALFYGIDSHLR 105
L+ LR L + +++ + +EA FY I S ++
Sbjct: 101 PVLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLIK 136
>KD14_HUMAN (Q9BQ13) Potassium channel tetramerisation domain
containing protein 14
Length = 225
Score = 38.9 bits (89), Expect = 0.029
Identities = 33/104 (31%), Positives = 46/104 (43%), Gaps = 7/104 (6%)
Query: 19 IKLNVGGKLFETTLSTIRS--GGPDSLLFALSNRFSND-PNPVFIDRDPEIFSVFLSLLR 75
++LNVGG+ TTL T+R G + +F+ + S D FIDR F L LR
Sbjct: 5 VELNVGGEFHTTTLGTLRKFPGSKLAEMFSSLAKASTDAEGRFFIDRPSTYFRPILDYLR 64
Query: 76 TNHLPSTARRFSKQELADEALFYGIDSHLRNATSPPPFSGIDAS 119
T +P+ E+ EA FY I ++ P G S
Sbjct: 65 TGQVPTQ----HIPEVYREAQFYEIKPLVKLLEDMPQIFGEQVS 104
>KD13_MOUSE (Q8BGV7) Potassium channel tetramerisation domain
containing protein 13 (Polymerase delta-interacting
protein 1)
Length = 329
Score = 38.9 bits (89), Expect = 0.029
Identities = 31/84 (36%), Positives = 41/84 (47%), Gaps = 6/84 (7%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFAL-SNR---FSNDPNPVFIDRDPEIFSVFLSLL 74
+KLNVGG L TTL T+ G D++L A+ S R ++ V IDR F L+ L
Sbjct: 43 VKLNVGGSLHYTTLRTLT--GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYL 100
Query: 75 RTNHLPSTARRFSKQELADEALFY 98
R +P EL EA +Y
Sbjct: 101 RDGSVPLPESARELGELLGEARYY 124
>KD13_HUMAN (Q8WZ19) Potassium channel tetramerization domain
containing protein 13 (Polymerase delta-interacting
protein 1) (FKSG86 protein) (pp6832) (TNFAIP1-like
protein)
Length = 329
Score = 38.9 bits (89), Expect = 0.029
Identities = 31/84 (36%), Positives = 41/84 (47%), Gaps = 6/84 (7%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFAL-SNR---FSNDPNPVFIDRDPEIFSVFLSLL 74
+KLNVGG L TTL T+ G D++L A+ S R ++ V IDR F L+ L
Sbjct: 43 VKLNVGGSLHYTTLRTLT--GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYL 100
Query: 75 RTNHLPSTARRFSKQELADEALFY 98
R +P EL EA +Y
Sbjct: 101 RDGSVPLPESTRELGELLGEARYY 124
>CIKW_DROME (P17972) Potassium voltage-gated channel protein Shaw
(Shaw2)
Length = 498
Score = 37.4 bits (85), Expect = 0.086
Identities = 31/92 (33%), Positives = 47/92 (50%), Gaps = 9/92 (9%)
Query: 17 DRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRFSN-DP--NPVFIDRDPEIFSVFLSL 73
+R+ LNVGG ET +T++ P + L L+ +N DP N F DR P +F+ L+
Sbjct: 10 NRVVLNVGGIRHETYKATLKKI-PATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNY 68
Query: 74 LRTN--HLPSTARRFSKQELADEALFYGIDSH 103
RT H P+ +E F+G+DS+
Sbjct: 69 YRTGKLHYPTDV---CGPLFEEELEFWGLDSN 97
>KCB1_RABIT (Q9MZ19) Potassium voltage-gated channel subfamily B
member 1 (Voltage-gated potassium channel subunit Kv2.1)
Length = 858
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/95 (28%), Positives = 39/95 (40%), Gaps = 12/95 (12%)
Query: 18 RIKLNVGG-----------KLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEI 66
R++LNVGG +L T L +R L + + +S D N F DR P
Sbjct: 32 RVRLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHDSLLEVCDDYSLDDNEYFFDRHPGA 91
Query: 67 FSVFLSLLRTNHLPSTARRFSKQELADEALFYGID 101
F+ L+ RT L + E ++GID
Sbjct: 92 FTSILNFYRTGRL-HMMEEMCALSFSQELDYWGID 125
>KCB1_PIG (O18868) Potassium voltage-gated channel subfamily B
member 1 (Voltage-gated potassium channel subunit Kv2.1)
(DRK1)
Length = 858
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/95 (28%), Positives = 39/95 (40%), Gaps = 12/95 (12%)
Query: 18 RIKLNVGG-----------KLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEI 66
R++LNVGG +L T L +R L + + +S D N F DR P
Sbjct: 32 RVRLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHDSLLEVCDDYSLDDNEYFFDRHPGA 91
Query: 67 FSVFLSLLRTNHLPSTARRFSKQELADEALFYGID 101
F+ L+ RT L + E ++GID
Sbjct: 92 FTSILNFYRTGRL-HMMEEMCALSFSQELDYWGID 125
>KCB1_HUMAN (Q14721) Potassium voltage-gated channel subfamily B
member 1 (Voltage-gated potassium channel subunit Kv2.1)
(h-DRK1)
Length = 858
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/95 (28%), Positives = 39/95 (40%), Gaps = 12/95 (12%)
Query: 18 RIKLNVGG-----------KLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEI 66
R++LNVGG +L T L +R L + + +S D N F DR P
Sbjct: 32 RVRLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHDSLLEVCDDYSLDDNEYFFDRHPGA 91
Query: 67 FSVFLSLLRTNHLPSTARRFSKQELADEALFYGID 101
F+ L+ RT L + E ++GID
Sbjct: 92 FTSILNFYRTGRL-HMMEEMCALSFSQELDYWGID 125
>KCD2_RAT (Q63881) Potassium voltage-gated channel subfamily D
member 2 (Voltage-gated potassium channel subunit Kv4.2)
(Shal1) (RK5)
Length = 630
Score = 36.6 bits (83), Expect = 0.15
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
Query: 19 IKLNVGGKLFETTLSTIRSGGPDSLLFALSNRFSNDPNP--VFIDRDPEIFSVFLSLLRT 76
I LNV G F+T T+ PD+LL + F P F DRDP+IF L+ RT
Sbjct: 43 IVLNVSGTRFQTWQDTLERY-PDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 101
Query: 77 NHL 79
L
Sbjct: 102 GKL 104
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,157,257
Number of Sequences: 164201
Number of extensions: 2689525
Number of successful extensions: 6450
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 6421
Number of HSP's gapped (non-prelim): 62
length of query: 478
length of database: 59,974,054
effective HSP length: 114
effective length of query: 364
effective length of database: 41,255,140
effective search space: 15016870960
effective search space used: 15016870960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149134.10