BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149130.9 + phase: 0 /pseudo
         (1214 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...   159  3e-38
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog              159  3e-38
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...   157  1e-37
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog              145  8e-34
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type...   104  1e-21
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type...    82  7e-15
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    76  6e-13
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type...    73  5e-12
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250...    70  5e-11
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type...    67  4e-10
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III     65  1e-09
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    62  9e-09
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type...    60  5e-08
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem...    54  2e-06
AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein                47  2e-04
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro...    44  0.003
AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein                         44  0.003
CENE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)             41  0.017
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III    35  1.6
EPA4_CHICK (Q07496) Ephrin type-A receptor 4 precursor (EC 2.7.1...    34  2.1

>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score =  159 bits (403), Expect = 3e-38
 Identities = 134/495 (27%), Positives = 228/495 (45%), Gaps = 28/495 (5%)

Query: 248 IHKLQLPNGISTSDSNILQEEALKYFKKFFCG---SQIPYSRFFNEGRHPALDDTGKTSL 304
           I+K++   G  T+D   +Q     ++K+ +     +     +F +  + P L+      L
Sbjct: 416 INKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHL 475

Query: 305 TSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAI 364
            SPI+ KE+ A +NS+   K+PGPDGF   F++ +   +   +  L     + G    + 
Sbjct: 476 NSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSF 535

Query: 365 SNTLIALIPKIDS-PNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPG 423
               I LIPK    P   ++FRPISL N   KI+ K+L +R++  +  +I P Q  F+PG
Sbjct: 536 YEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPG 595

Query: 424 RGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVK 483
                N      ++H++ + K  K ++   LD EKAFD +   F+   L   G     + 
Sbjct: 596 MQGWFNIRKSINVIHYINKLK-DKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLN 654

Query: 484 LIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSW 543
           +I    S    ++  NG K+       G RQG PLSPYLF + +E L+ AI+    Q   
Sbjct: 655 MIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQ---QKEI 711

Query: 544 EPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRA--Y 601
           + I I  +  +IS  L ADD++++     +  + + NL + F    G KIN +KS A  Y
Sbjct: 712 KGIQIGKEEVKIS--LLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLY 769

Query: 602 YSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNF--ILEKMQTRLASWK 659
             +     +I   T  S + +     KYLG  + +      D NF  + ++++  L  WK
Sbjct: 770 TKNKQAEKEIRETTPFSIVTNNI---KYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWK 826

Query: 660 NRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNI----CDSIDQTARNFLWKGSNNKGIH 715
           +   +  GR+ +    ++ +P    + N +P  I     + ++     F+W   NNK   
Sbjct: 827 DLPCSWIGRINIVK--MAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVW---NNKKPR 881

Query: 716 LVNWKTITRPKSIGG 730
           +   K++ + K   G
Sbjct: 882 IA--KSLLKDKRTSG 894


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score =  159 bits (403), Expect = 3e-38
 Identities = 136/526 (25%), Positives = 242/526 (45%), Gaps = 29/526 (5%)

Query: 242 RRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCG---SQIPYSRFFNEGRHPALDD 298
           +R+ N+I  ++   G  T+D   +Q    +Y+K  +     +     +F +    P L+ 
Sbjct: 383 KREKNQIDTIKNDRGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQ 442

Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
               SL  PIT  E+ A +NS+   K+PGP+GF   F+++Y   +   +  L +S    G
Sbjct: 443 EEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEG 502

Query: 359 HFDPAISNTLIALIPKIDSPNTYKD-FRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQ 417
               +     I LIPK     T K+ FRPISL N   KI+ K+L ++++  +  LI   Q
Sbjct: 503 ILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQ 562

Query: 418 SSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
             F+P      N      I+  + R+K    ++   +D EKAFD +   F+   L   G 
Sbjct: 563 VGFIPAMQGWFNIRKSINIIQHINRTK-DTNHMIISIDAEKAFDKIQQPFMLKPLNKLGI 621

Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKM--PPFKPTHGLRQGDPLSPYLFILCMEKLSVAI- 534
               +K+I         +++ NG K+  PP K   G RQG PLSP L  + +E L+ AI 
Sbjct: 622 DGTYLKIIRAIYDKPTANIILNGQKLEAPPLKT--GTRQGCPLSPLLPNIVLEVLARAIR 679

Query: 535 QDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKIN 594
           Q+  ++G    I +  +  ++S  LFADD++++ +      Q +  L   FS+ SG KIN
Sbjct: 680 QEKEIKG----IQLGKEEVKLS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKIN 733

Query: 595 ISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPK--RSDFNFILEKMQ 652
           + KS+A+  +     +   ++ +    ++  + KYLG  + +      + ++  +L +++
Sbjct: 734 VQKSQAFLYTNNRQTESQIMSELPFTIASKRI-KYLGIQLTRDVKDLFKENYKPLLNEIK 792

Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQIN----WLPQNICDSIDQTARNFLWKG 708
                WKN   +  GR+ +    ++ +P    + N     LP      +++T   F+W  
Sbjct: 793 EDTNKWKNIPCSWVGRINIVK--MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-- 848

Query: 709 SNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQS 754
            N K  H+    T+++    GG+ +   +      + K  W   Q+
Sbjct: 849 -NQKRAHIAK-STLSQKNKAGGITLPDFKLYYKATVTKTAWYWYQN 892


>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score =  157 bits (398), Expect = 1e-37
 Identities = 143/526 (27%), Positives = 241/526 (45%), Gaps = 29/526 (5%)

Query: 217 YQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKF 276
           + +SR Q +   D+ + FF+A    +    +I  L   +G    D   +++ A  +++  
Sbjct: 357 FVRSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNL 416

Query: 277 FCGSQI-PYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIF 335
           F    I P +        P + +  K  L +PIT  E+  AL  M   K+PG DG    F
Sbjct: 417 FSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEF 476

Query: 336 FKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYK 395
           F+ +W  +G D   ++  AF  G    +    +++L+PK       K++RP+SL +T YK
Sbjct: 477 FQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYK 536

Query: 396 IITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLD 455
           I+ K +  RL+  L  +I P QS  +PGR   DN  +++++LHF +R+     +++  LD
Sbjct: 537 IVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLS--LD 594

Query: 456 LEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQG 515
            EKAFD V+  +L   L  + F    V  +    +SA   +  N +   P     G+RQG
Sbjct: 595 QEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQG 654

Query: 516 DPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLL--FADDVLLFTKAKSS 573
            PLS  L+ L +E     ++  +         ++   P +  +L  +ADDV+L  +    
Sbjct: 655 CPLSGQLYSLAIEPFLCLLRKRL-------TGLVLKEPDMRVVLSAYADDVILVAQ-DLV 706

Query: 574 QLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNG--KINNL-TAISGIQSTTTLGKYL 630
            L+      + ++ AS  +IN SK     SSG   G  K++ L  A   I   + + KYL
Sbjct: 707 DLERAQECQEVYAAASSARINWSK-----SSGLLEGSLKVDFLPPAFRDISWESKIIKYL 761

Query: 631 G-FPMLQGRPKRSDFNFILEKMQTRLASWKN--RLLNRTGRLTLATSVLSTIPTYYMQIN 687
           G +   +  P   +F  + E + TRL  WK   ++L+  GR  +   ++++   Y +   
Sbjct: 762 GVYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICL 821

Query: 688 WLPQNICDSIDQTARNFLWKGSNNKGIHLVNWKTITRPKSIGGLGI 733
              Q     I +   +FLW G      H V+    + P   GG G+
Sbjct: 822 SPTQEFIAKIQRRLLDFLWIGK-----HWVSAGVSSLPLKEGGQGV 862


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score =  145 bits (365), Expect = 8e-34
 Identities = 125/478 (26%), Positives = 220/478 (45%), Gaps = 25/478 (5%)

Query: 242 RRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRF--FNEGRH-PALDD 298
           +R  + I  ++  N   T+D + +Q+   +Y+KK +            + E  H P L  
Sbjct: 383 KRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQ 442

Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
                L  PI+  E+ + + ++   K+PGPDGF   F++ +   +   + +L ++    G
Sbjct: 443 KEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEG 502

Query: 359 HFDPAISNTLIALIPKIDSPNTYKD-FRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQ 417
                     I LIPK     T K+ +RPISL N   KI+ K+L +R++  +  +I   Q
Sbjct: 503 ILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQ 562

Query: 418 SSFLPG-RGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFG 476
             F+PG +G  +    +  I H  K   + K ++   +D EKAFDN+   F+   L   G
Sbjct: 563 VGFIPGSQGWFNIRKSINVIQHINKL--KNKDHMILSIDAEKAFDNIQHPFMIRTLKKIG 620

Query: 477 FPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQD 536
                +KLI    S    +++ NG K+  F    G RQG PLSP LF + ME L++AI++
Sbjct: 621 IEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIRE 680

Query: 537 AVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINIS 596
              + + + IHI ++  ++S  LFADD++++ +        +  +   +S  SG KIN  
Sbjct: 681 ---EKAIKGIHIGSEEIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTH 735

Query: 597 KSRAYYSSGTPNGKINNLTAISGIQSTTT--LGKYLGFPMLQGRPK--RSDFNFILEKMQ 652
           KS A+  +   N      T    I  T      KYLG  + +      + ++  + +++ 
Sbjct: 736 KSVAFIYT---NNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIA 792

Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWL----PQNICDSIDQTARNFLW 706
             +  WKN   +  GR+ +    +S +P      N +    P +    +++   +F+W
Sbjct: 793 EDVNKWKNIPCSWLGRINIVK--MSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIW 848


>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
           retrotransposable element R2DM [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1057

 Score =  104 bits (260), Expect = 1e-21
 Identities = 103/386 (26%), Positives = 168/386 (42%), Gaps = 35/386 (9%)

Query: 240 VIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALD-- 297
           V++R W+K     + + ++ +D +++  + +           +PY R       P+    
Sbjct: 279 VVQRNWDKHKGRCIKSLLNGTDESVMPSQEI----------MVPYWREVMTQPSPSSCSG 328

Query: 298 -----DTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVR 352
                D     + S IT++++ A+  S+    +PGPDG   I  K    +    +  ++ 
Sbjct: 329 EVIQMDHSLERVWSAITEQDLRASRVSLS--SSPGPDG---ITPKSAREVPSGIMLRIMN 383

Query: 353 SAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNL 412
                G+   +I       IPK  +    +DFRPIS+ + L + +  +L  RL   +N  
Sbjct: 384 LILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN-- 441

Query: 413 IGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCL 472
             P Q  FLP  G ADN+ I+  +L    +  R   Y+A  LD+ KAFD+++   +   L
Sbjct: 442 WDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSC-YIA-NLDVSKAFDSLSHASIYDTL 499

Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
             +G P   V  + +       SL  +G     F P  G++QGDPLSP LF L M++L  
Sbjct: 500 RAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLR 559

Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
            +   +  G+     I N         FADD++LF + +   LQ + +    F    GLK
Sbjct: 560 TLPSEI--GAKVGNAITNAA------AFADDLVLFAETRMG-LQVLLDKTLDFLSIVGLK 610

Query: 593 INISKSRAYYSSGTPNGKINNLTAIS 618
           +N  K       G P  K   L A S
Sbjct: 611 LNADKCFTVGIKGQPKQKCTVLEAQS 636


>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 711

 Score = 82.4 bits (202), Expect = 7e-15
 Identities = 79/295 (26%), Positives = 132/295 (43%), Gaps = 22/295 (7%)

Query: 307 PITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISN 366
           PI ++E+  A+   KP  APG DG       +          HL+R     GH     + 
Sbjct: 5   PIAREEIQCAIKGWKP-SAPGSDGLTVQAITRTRLPRNFVQLHLLR-----GHVPTPWTA 58

Query: 367 TLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGT 426
               LIPK        ++RPI++ + L +++ ++L  RL   +   + P Q  +    GT
Sbjct: 59  MRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE--LHPAQKGYARIDGT 116

Query: 427 ADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIM 486
             NS++L    +   R +++K Y    LD+ KAFD V+   +   L   G  +     I 
Sbjct: 117 LVNSLLLDT--YISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYIT 174

Query: 487 HCVSSANYSL-LWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEP 545
             +S +  ++ +  G++        G++QGDPLSP+LF   +++L  ++Q     G    
Sbjct: 175 GSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGG--- 231

Query: 546 IHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNL--FDRFSRASGLKINISKS 598
              I +  +I  L FADD+LL    + + +   T L     F R  G+ +N  KS
Sbjct: 232 --TIGE-EKIPVLAFADDLLLL---EDNDVLLPTTLATVANFFRLRGMSLNAKKS 280


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 75.9 bits (185), Expect = 6e-13
 Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 30/318 (9%)

Query: 325 APGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDF 384
           A GPDG         W+ + + +  L       G       ++   LIPK         F
Sbjct: 334 AAGPDGMTTTA----WNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACF 389

Query: 385 RPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSK 444
           RP+S+ +   +   ++L +R+    + L+   Q +F+   G A+N+ +L  ++    R K
Sbjct: 390 RPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMIK-EARMK 446

Query: 445 RKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMP 504
            K  Y+A  LD++KAFD+V    +   L     P  +   IM    ++   L     K  
Sbjct: 447 IKGLYIAI-LDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGR 505

Query: 505 PFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDV 564
             +P  G+RQGDPLSP LF          + DAVL+   E    +    +I  L+FADD+
Sbjct: 506 WIRPARGVRQGDPLSPLLF--------NCVMDAVLRRLPENTGFLMGAEKIGALVFADDL 557

Query: 565 LLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAIS------ 618
           +L  + +   LQ   +  +   +  GL+  +   + +  +  P+GK   +   +      
Sbjct: 558 VLLAETREG-LQASLSRIEAGLQEQGLE--MMPRKCHTLALVPSGKEKKIKVETHKPFTV 614

Query: 619 GIQSTTTLG-----KYLG 631
           G Q  T LG     KYLG
Sbjct: 615 GNQEITQLGHADQWKYLG 632


>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 869

 Score = 72.8 bits (177), Expect = 5e-12
 Identities = 84/317 (26%), Positives = 140/317 (43%), Gaps = 23/317 (7%)

Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLT-GHFD 361
           +L  P++  E+ +A  S +  K  GPDG       + W+ + D    L+ + F+  G   
Sbjct: 154 TLWDPVSLIEIKSARASNE--KGAGPDGVT----PRSWNALDDRYKRLLYNIFVFYGRVP 207

Query: 362 PAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFL 421
             I  +     PKI+       FRP+S+C+ + +   K+L  R            Q+++L
Sbjct: 208 SPIKGSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRFVSCYT--YDERQTAYL 265

Query: 422 PGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDII 481
           P  G   N  +L  I+   KR  RK+ ++A  LDL KAF++V    L   + + G P  +
Sbjct: 266 PIDGVCINVSMLTAIIAEAKR-LRKELHIAI-LDLVKAFNSVYHSALIDAITEAGCPPGV 323

Query: 482 VKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQG 541
           V  I    ++    + + G K        G+ QGDPLS  LF L  EK   A+ +   +G
Sbjct: 324 VDYIADMYNNVITEMQFEG-KCELASILAGVYQGDPLSGPLFTLAYEKALRALNN---EG 379

Query: 542 SWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAY 601
            ++   +     +++   ++DD LL        LQ   + F       GL+IN  KS+  
Sbjct: 380 RFDIADV-----RVNASAYSDDGLLLAMTVIG-LQHNLDKFGETLAKIGLRINSRKSKTV 433

Query: 602 YSSGTPNGKINNLTAIS 618
             S  P+G+   +  +S
Sbjct: 434 --SLVPSGREKKMKIVS 448


>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
           (ORF102)
          Length = 122

 Score = 69.7 bits (169), Expect = 5e-11
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query: 499 NGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHL 558
           NG       P+ GLRQGDPLSPYLFILC E LS   + A  QG    I + N+ P+I+HL
Sbjct: 15  NGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHL 74

Query: 559 LFADD 563
           LFADD
Sbjct: 75  LFADD 79


>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 606

 Score = 66.6 bits (161), Expect = 4e-10
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 425 GTADNSIILQEILHFMKRSKRK-KGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVK 483
           GT  N I+L+   H++K  + K K Y    LD+ KAFD V+   +   +  FG  D +  
Sbjct: 1   GTLANIIMLE---HYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQD 57

Query: 484 LIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSW 543
            IM  ++ A  +++  G         +G++QGDPLSP LF + +++L   + D     S 
Sbjct: 58  FIMSTITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASM 117

Query: 544 EPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYS 603
            P        +I+ L FADD+LL           +      F R  G+ +N  K  A  S
Sbjct: 118 TP------ACKIASLAFADDLLLLEDRDIDVPNSLATTCAYF-RTRGMTLNPEKC-ASIS 169

Query: 604 SGTPNGK 610
           + T +G+
Sbjct: 170 AATVSGR 176


>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
          Length = 1222

 Score = 65.1 bits (157), Expect = 1e-09
 Identities = 61/243 (25%), Positives = 107/243 (43%), Gaps = 25/243 (10%)

Query: 361 DPAISN----TLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPY 416
           D AI N     +I  IPK  +P++  ++RPISL +   +I+ +++  R+R   ++L+ P+
Sbjct: 658 DSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPH 717

Query: 417 QSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFG 476
           Q  FL  R    + +    + H + ++++    + F  D  KAFD V+   L   L  FG
Sbjct: 718 QHGFLNFRSCPSSLVRSISLYHSILKNEKSLDILFF--DFAKAFDKVSHPILLKKLALFG 775

Query: 477 FPDIIVKLIMHCVSSANYSLLWNGNKMPPFKP-THGLRQGDPLSPYLFILCMEKLSVAIQ 535
              +        +    +S+  N        P + G+ QG    P LFIL +  L + ++
Sbjct: 776 LDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFILFINDLLIDLE 835

Query: 536 DAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINI 595
                            P I    FADD+ +F     S LQ   +   ++S+ + L +  
Sbjct: 836 -----------------PNIHVSCFADDIKIF-HHNPSTLQNSIDTIVKWSKKNKLPLAP 877

Query: 596 SKS 598
           +KS
Sbjct: 878 AKS 880


>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 62.0 bits (149), Expect = 9e-09
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 679 IPTYYMQINWLPQNICDSIDQTARNFLWKGSNNKG-IHLVNWKTITRPKSI-GGLGIRSA 736
           +P Y M    L + +C  +      F W    NK  I  V W+ + + K   GGLG R  
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62

Query: 737 RDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDIL 796
              N  LL K  + ++   + L   LL  +Y   +S++E +V +  S +W SII  +++L
Sbjct: 63  GWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELL 122

Query: 797 KTGYSWRAGAGT-SSFWFSNW 816
             G     G G  +  W   W
Sbjct: 123 SRGLLRTIGDGIHTKVWLDRW 143


>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1004

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 312 EVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP----AISNT 367
           EV  ++   K  K+PGPDG      +  W  + + +F L +   L  +F      A    
Sbjct: 409 EVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLVI 468

Query: 368 LIALIPKIDS-PNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNL-IGPYQSSFLPGRG 425
           L+ L+ +I S P +Y   RPI L + L K++  ++V RL   L ++ + PYQ +F  G+ 
Sbjct: 469 LLKLLDRIRSDPGSY---RPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKS 525

Query: 426 TADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNW 465
           T D    +Q  +         K  +   +D + AFDN+ W
Sbjct: 526 TEDAWRCVQRHV----ECSEMKYVIGLNIDFQGAFDNLGW 561


>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 54.3 bits (129), Expect = 2e-06
 Identities = 135/649 (20%), Positives = 244/649 (36%), Gaps = 118/649 (18%)

Query: 90  VEVLCRLHSDHNPLLLRFGGLPLTRGPRPF---------RFEAAWIDHYDYGNVVKRSWS 140
           V+ L  L SDH PLL     +P+ + PR           RF+A    H D    ++ +  
Sbjct: 204 VQTLHELSSDHTPLLADLHAMPINKPPRSCLLARGADIERFKAYLTQHIDLSVGIQGTDD 263

Query: 141 THTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKE 200
                        ++N+I    D F +I +R +     ++   S+ + V+S R   L   
Sbjct: 264 -------------IDNAI----DSFMDILKRAA-----IRSAPSHQQNVESSRQLQLPP- 300

Query: 201 LQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIR--RKWNKIHKLQLPNGIS 258
                   +    +   +K R ++ + GD      H++   R  +  N+  + Q+ N + 
Sbjct: 301 --------IVASLIRLKRKVRREYARTGDARIQQIHSRLANRLHKVLNRRKQSQIDNLLE 352

Query: 259 TSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSL-------------- 304
             D++     +L    K +     P S   N           KT +              
Sbjct: 353 NLDTDGSTNFSLWRITKRYKTQATPNSAIRNPAGGWCRTSREKTEVFANHLEQRFKALAF 412

Query: 305 ----------------------TSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHI 342
                                   P+T +EV   ++ +KP KAPG D    +   +   +
Sbjct: 413 APESHSLMVAESLQTPFQMALPADPVTLEEVKELVSKLKPKKAPGED----LLDNRTIRL 468

Query: 343 VGDD-VFHLV---RSAFLTGHFDPAISNTLIALIPKI-DSPNTYKDFRPISLCNTLYKII 397
           + D  + +LV    S    G+F  A     I +I K    P     +RP SL  +L K++
Sbjct: 469 LPDQALLYLVLIFNSILRVGYFPKARPTASIIMILKPGKQPLDVDSYRPTSLLPSLGKML 528

Query: 398 TKVLVHRL--RPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYV-AFKL 454
            +++++R+     +   I  +Q  F    GT +    L  +++F   +  KK Y  +  L
Sbjct: 529 ERLILNRILTSEEVTRAIPKFQFGFRLQHGTPEQ---LHRVVNFALEALEKKEYAGSCFL 585

Query: 455 DLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQ 514
           D+++AFD V    L         P +  +LI        +S+  +G +        G+ Q
Sbjct: 586 DIQQAFDRVWHPGLLYKAKSLLSPQLF-QLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQ 644

Query: 515 GDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKA---- 570
           G  L P L+       S+   D   Q +   +  + +G ++    +ADD+ + TK+    
Sbjct: 645 GSVLGPTLY-------SIFTADMPNQNA---VTGLAEG-EVLIATYADDIAVLTKSTCIV 693

Query: 571 -KSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINN---LTAISGIQSTTTL 626
             +  LQ   + F  ++    +K N+S +    ++ T    I +   +T    + S T  
Sbjct: 694 EATDALQEYLDAFQEWA----VKWNVSINAGKCANVTFTNAIRDCPGVTINGSLLSHTHE 749

Query: 627 GKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 675
            KYLG  + +    R     +    +TR+    N LL    +L+L   V
Sbjct: 750 YKYLGVILDRSLTFRRHITSLQHSFRTRITK-MNWLLAARNKLSLDNKV 797


>AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein
          Length = 789

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 44/171 (25%), Positives = 74/171 (42%), Gaps = 25/171 (14%)

Query: 372 IPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSI 431
           + +++ P T   FRP+S+ N   KI+ + +   L    NN    Y   F P      N  
Sbjct: 278 VRRVEIPKTSGGFRPLSVGNPREKIVQESMRMMLEIIYNNSFSYYSHGFRP------NLS 331

Query: 432 ILQEILHFMKRSKRKKGYVAFKLDLEKAFD----NVNWDFLNSCLLDFGFPDIIVKLIM- 486
            L  I+      +    ++  K+DL K FD    N+  + LN  + D GF D++ KL+  
Sbjct: 332 CLTAIIQCKNYMQYCNWFI--KVDLNKCFDTIPHNMLINVLNERIKDKGFMDLLYKLLRA 389

Query: 487 -HCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQD 536
            +   + NY              T G+ QG  +SP L  + ++KL   +++
Sbjct: 390 GYVDKNNNY-----------HNTTLGIPQGSVVSPILCNIFLDKLDKYLEN 429


>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2)
          Length = 1021

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 33/266 (12%)

Query: 312 EVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFD-----PAISN 366
           EV   +  +K  ++PG DG +    K  W  + + +  L       G+F      P + +
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497

Query: 367 TLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGT 426
            L         P++Y   R I L     K++  ++V+R+R  L      +Q  F  GR  
Sbjct: 498 LLKGPDKDKCEPSSY---RGICLLPVFGKVLEAIMVNRVREVLPEGC-RWQFGFRQGRCV 553

Query: 427 ADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIM 486
            D     + +   +  S  +     F +D + AFDNV W    S L D G  ++    + 
Sbjct: 554 ED---AWRHVKSSVGASAAQYVLGTF-VDFKGAFDNVEWSAALSRLADLGCREM---GLW 606

Query: 487 HCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPI 546
               S   +++ + +       T G  QG    P+++ + M+ L   +Q           
Sbjct: 607 QSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQ----------- 655

Query: 547 HIINDGPQISHLLFADDVLLFTKAKS 572
                 P      +ADD+LL  +  S
Sbjct: 656 ------PYCQLSAYADDLLLLVEGNS 675


>AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein
          Length = 834

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 73/343 (21%), Positives = 132/343 (38%), Gaps = 59/343 (17%)

Query: 375 IDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQ 434
           ++ P      RP+S+ N   KI+ +V+   L    +  +  +   F   R        + 
Sbjct: 313 VNIPKPKGGMRPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGF---RKNMSCQTAIW 369

Query: 435 EILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDF----LNSCLLDFGFPDIIVKLIMHCVS 490
           E+ +    S         ++DL+K FD ++ D     L   + D GF D++ KL+     
Sbjct: 370 EVRNMFGGSNW-----FIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLR---- 420

Query: 491 SANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCM----------------------- 527
            A Y       K    KP  GL QG  +SP L  + M                       
Sbjct: 421 -AGYI----DEKGTYHKPMLGLPQGSLISPILCNIVMTLVDNWLEDYINLYNKGKVKKQH 475

Query: 528 ---EKLSVAIQDAVL---------QGSWEPIHIINDG--PQISHLLFADDVLLFTKAKSS 573
              +KLS  I  A +         + +  P  I ND    ++ ++ +ADD+L+      +
Sbjct: 476 PTYKKLSRMIAKAKMFSTRLKLHKERAKGPTFIYNDPNFKRMKYVRYADDILIGVLGSKN 535

Query: 574 QLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFP 633
             + I    + F  + GL +N  K+    ++ TP   +    +I+ ++   T+ K +   
Sbjct: 536 DCKMIKRDLNNFLNSLGLTMNEEKTLITCATETPARFLGYNISITPLKRMPTVTKTIRGK 595

Query: 634 MLQGR-PKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 675
            ++ R   R   N  +  +  +LA+      N+ GR+ + T V
Sbjct: 596 TIRSRNTTRPIINAPIRDIINKLATNGYCKHNKNGRMGVPTRV 638


>CENE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)
          Length = 2663

 Score = 41.2 bits (95), Expect = 0.017
 Identities = 32/129 (24%), Positives = 60/129 (45%), Gaps = 8/129 (6%)

Query: 140 STHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEK 199
           +T TH  + +L++ ++ S+    DVF N     S +EW         E ++S  ++    
Sbjct: 447 TTKTHKLSINLLREIDESVCSESDVFSNTLDTLSEIEWNPATKLLNQENIESELNS---- 502

Query: 200 ELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGIST 259
            L+ +Y++++   E L  +K  E  +KL +KN         + RK  K  ++QL + IS 
Sbjct: 503 -LRADYDNLVLDYEQLRTEK-EEMELKLKEKND--LDEFEALERKTKKDQEMQLIHEISN 558

Query: 260 SDSNILQEE 268
             + +   E
Sbjct: 559 LKNLVKHRE 567


>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
          Length = 364

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 29/128 (22%), Positives = 50/128 (38%), Gaps = 17/128 (13%)

Query: 454 LDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLR 513
           LD  KAFD V+ D L   L        +++ +   +++ ++ +        P K   G+ 
Sbjct: 23  LDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFKVKVGNTLSEPKKTVCGVP 82

Query: 514 QGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSS 573
           QG  +SP LF + + ++S  +   V                     FADD+ L+     +
Sbjct: 83  QGSVISPVLFGIFVNEISANLPVGVYCKQ-----------------FADDIKLYAAIPKN 125

Query: 574 QLQFITNL 581
           Q Q    L
Sbjct: 126 QSQISLQL 133


>EPA4_CHICK (Q07496) Ephrin type-A receptor 4 precursor (EC
           2.7.1.112) (Tyrosine-protein kinase receptor CEK8)
          Length = 986

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 690 PQNICDSIDQTARNFLWKGSNNK-GIHLVNWKTITRPKSIG--------GLGIRSARDAN 740
           PQN+  ++++T+ N  W    NK G   +++  + +    G        G G+  +   N
Sbjct: 332 PQNLISNVNETSVNLEWSAPQNKGGRDDISYNVVCKRCGAGEPSHCRSCGSGVHFSPQQN 391

Query: 741 ICLLGKL-VWDMVQSTN---KLW-VNLLAKKYSSGTSLLEANVNSN-SSPSWFSIIRAKD 794
                K+ + D++  TN   ++W VN ++K   S    +   V +N ++PS  ++I+AK+
Sbjct: 392 GLKTTKVSITDLLAHTNYTFEVWAVNGVSKHNPSQDQAVSVTVTTNQAAPSPIALIQAKE 451

Query: 795 ILK 797
           I +
Sbjct: 452 ITR 454


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,609,696
Number of Sequences: 164201
Number of extensions: 5960541
Number of successful extensions: 14435
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14388
Number of HSP's gapped (non-prelim): 34
length of query: 1214
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1092
effective length of database: 39,941,532
effective search space: 43616152944
effective search space used: 43616152944
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 72 (32.3 bits)