
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.2 + phase: 0
(239 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPA3_SCHPO (O14086) DNA-directed RNA polymerase I 49 kDa polypep... 65 1e-10
GRPE_FUSNP (Q70WY9) GrpE protein (HSP-70 cofactor) 34 0.27
RPA3_YEAST (Q01080) DNA-directed RNA polymerase I 49 kDa polypep... 33 0.60
NAGH_CLOPE (P26831) Hyaluronoglucosaminidase precursor (EC 3.2.1... 33 0.79
BGH3_PIG (O11780) Transforming growth factor-beta induced protei... 31 2.3
ENPL_PIG (Q29092) Endoplasmin precursor (94 kDa glucose-regulate... 31 3.0
Y208_BORBU (O51226) Hypothetical protein BB0208 30 3.9
TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (V... 30 5.1
HT31_ARATH (Q04996) Homeobox protein HAT3.1 30 5.1
ENPL_MESAU (P08712) Endoplasmin (94 kDa glucose-regulated protei... 30 5.1
BGH3_HUMAN (Q15582) Transforming growth factor-beta induced prot... 30 5.1
YLXY_BACSU (P50850) Hypothetical protein ylxY precursor 30 6.7
PBP_STAAU (P07944) Beta-lactam-inducible penicillin-binding protein 30 6.7
YJL2_SCHPO (O74415) Hypothetical protein C14G10.02 in chromosome... 29 8.7
SCPA_MYCPE (Q8EX12) Segregation and condensation protein A 29 8.7
CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 ... 29 8.7
>RPA3_SCHPO (O14086) DNA-directed RNA polymerase I 49 kDa
polypeptide (EC 2.7.7.6) (A49)
Length = 425
Score = 65.5 bits (158), Expect = 1e-10
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 32/252 (12%)
Query: 14 DEKMKNVEVKETALANTEAHVT-----RHIPPYNSSATTPQEAYVLDKIILAEEWN--YL 66
D+ + NV+ AL E R IPP N A + ++AY L+ II EE++ Y+
Sbjct: 176 DQLVSNVQKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAYKLEDIIPKEEFSAIYI 235
Query: 67 QDIYYSLQKEVAADFSLYPS--FIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQH 124
+ + + + A Y FI R RL IE+ +K+ + IL +I+ L F
Sbjct: 236 KPLLENPDERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--ARILYYISLLQAFLFSR 293
Query: 125 SMDGISSSKFEKL---PYTLYHRFTTMFDVTE---SRRLPPEKMNLLISYVLVLTLFSDD 178
G + +KL P L F T S ++ +++ +I Y+LVL L D+
Sbjct: 294 RSVGNRETLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVDKIICYILVLCLIVDN 353
Query: 179 FRTDYRDIVKDLRMSTLTLRPIFEHLGCK---FISSQKVSY------------ATLPIPL 223
+ TD + DL + T+ +F +GC+ + +Q+++ A L IPL
Sbjct: 354 YSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNKTDAKNHKRAVLKIPL 413
Query: 224 TFSQIKKRKRKN 235
F + ++ + +N
Sbjct: 414 EFPKPRRGRARN 425
>GRPE_FUSNP (Q70WY9) GrpE protein (HSP-70 cofactor)
Length = 202
Score = 34.3 bits (77), Expect = 0.27
Identities = 40/155 (25%), Positives = 62/155 (39%), Gaps = 26/155 (16%)
Query: 8 EAKKNLDEKMKNVEVKETALANTEAH-----VTRHIPPYNSSATTPQEAYVLDKIILAEE 62
E K ++E++KN EVKE + H +H +N +A + EE
Sbjct: 14 EINKEVNEELKNEEVKEETHEHEHKHGGHTCCGKHGHKHNDEEIGKLKAEI-------EE 66
Query: 63 W--NYL------QDIYYSLQKEV-----AADFSLYPSFIRNRINRLKKIEDDSEKKKLSC 109
W YL Q+ +KEV A + F+ + N + IE E K
Sbjct: 67 WKNEYLRKQADFQNFTKRKEKEVDELKKFASEKIITQFLGSLDNLERAIESSIESKDFDS 126
Query: 110 ILSFINYLVK-FKDQHSMDGISSSKFEKLPYTLYH 143
+L I +V+ KD S +G+ K E + +YH
Sbjct: 127 LLKGIEMIVRNLKDIMSAEGVEEIKTEGVYDPVYH 161
>RPA3_YEAST (Q01080) DNA-directed RNA polymerase I 49 kDa
polypeptide (EC 2.7.7.6) (A49)
Length = 415
Score = 33.1 bits (74), Expect = 0.60
Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 36 RHIPPYNSSATTPQEAYVLDKIILAEEWNYLQ--DIYYSLQKEVAADFSLYPSFIRNRIN 93
R P N AT ++ Y ++ II +E +++ I KE + Y + +
Sbjct: 186 RPTPLANIDATDVEQIYPIESIIPKKELQFIRVSSILKEADKEKKLELFPYQNNSKYVAK 245
Query: 94 RLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGIS------SSKFEKLPYTLYHRFTT 147
+L + S+ KL +L +++ L+ + ++ + +S E L + RFT
Sbjct: 246 KLDSLTQPSQMTKLQ-LLYYLSLLLGVYENRRVNNKTKLLERLNSPPEILVDGILSRFTV 304
Query: 148 M----FDVTESRR--LPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDLRMSTLTLRPIF 201
+ F ++ R + P+ + ++ Y+L + + D+F + + +L + + +F
Sbjct: 305 IKPGQFGRSKDRSYFIDPQNEDKILCYILAIIMHLDNFIVEITPLAHELNLKPSKVVSLF 364
Query: 202 EHLGC-------------KFISSQKVSY--ATLPIPLTFSQIKKRKR 233
LG S SY AT+ +P ++ +R R
Sbjct: 365 RVLGAIVKGATVAQAEAFGIPKSTAASYKIATMKVPFKLPEMTRRGR 411
>NAGH_CLOPE (P26831) Hyaluronoglucosaminidase precursor (EC
3.2.1.35) (Hyaluronidase) (Mu toxin)
Length = 1628
Score = 32.7 bits (73), Expect = 0.79
Identities = 22/111 (19%), Positives = 54/111 (47%), Gaps = 6/111 (5%)
Query: 83 LYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMD---GISSSKFEKLPY 139
LYP + I +L ++ ++++ + + + F+N V+F + + G+ +KF +L
Sbjct: 235 LYPEEKLSEIKKLAQVGNETKNRYVYALHPFMNNPVRFDTEENYQNDLGVIKAKFTQLLE 294
Query: 140 TLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDL 190
+F + D + P + ++ + + LT + ++ ++ Y D+ DL
Sbjct: 295 NDVRQFAILADDASA---PAQGASMYVKLLTDLTRWLEEQQSTYPDLKTDL 342
>BGH3_PIG (O11780) Transforming growth factor-beta induced protein
IG-H3 precursor (Beta IG-H3) (Kerato-epithelin)
(RGD-containing collagen associated protein) (RGD-CAP)
Length = 683
Score = 31.2 bits (69), Expect = 2.3
Identities = 17/59 (28%), Positives = 32/59 (53%)
Query: 86 SFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLYHR 144
S + N I ++ +IED E + + S +N L++ Q+++ S+ FEK+P +R
Sbjct: 237 STVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPSNEAFEKIPAETLNR 295
>ENPL_PIG (Q29092) Endoplasmin precursor (94 kDa glucose-regulated
protein) (GRP94) (GP96 homolog) (98 kDa protein kinase)
(PPK 98) (ppk98)
Length = 804
Score = 30.8 bits (68), Expect = 3.0
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 1 MKRDEEPEAKKNLDEKMKNVE-----VKETALANT--EAHVTRHIPPYNSSATTPQEAYV 53
+K DE ++K+N + K E +K+ AL + +A V++ + + Q +
Sbjct: 596 VKFDESEKSKENREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWS 655
Query: 54 --LDKIILAEEWNYLQDI---YYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLS 108
+++I+ A+ + +DI YY+ QK+ +P IR+ + R+K+ EDD L+
Sbjct: 656 GNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHP-LIRDMLRRVKEDEDDKTVSDLA 714
Query: 109 CIL 111
+L
Sbjct: 715 VVL 717
>Y208_BORBU (O51226) Hypothetical protein BB0208
Length = 581
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 56 KIILAEEWNYLQDIY---YSLQKEVAADFSLYPSFIRN-RINRLKKIEDDSEKKKL--SC 109
KII ++ N Q Y Y L K + + I+N R N ++K+ED++EKK L C
Sbjct: 470 KIIKIQKINPNQLDYQKSYLLIKSLKTRSRILKIIIKNIRFNLIEKLEDENEKKLLPAMC 529
Query: 110 ILSFINYLVKFKDQHSM 126
L + LV+ K+ +
Sbjct: 530 YLIYCENLVELKNNRKI 546
>TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor
(Vitamin E deficient 1) (Sucrose export defective 1)
Length = 488
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 7/54 (12%)
Query: 154 SRRLPPEKMNLLISYVLVLTLF------SDDFRTDYRDIVKDLRMSTLTLRPIF 201
++ +PPE+ N +S T F DD RTDY + VK R T RP++
Sbjct: 183 NKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYST-RPVY 235
>HT31_ARATH (Q04996) Homeobox protein HAT3.1
Length = 661
Score = 30.0 bits (66), Expect = 5.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 89 RNRINRLKKIEDDSE----KKKLSCILSFINYLVKFKDQHSMDGISSSKFEKL 137
+N+ ++ +D E KKKL L+ INY D +S++G S EK+
Sbjct: 100 KNKTMNKGQVREDDEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKI 152
>ENPL_MESAU (P08712) Endoplasmin (94 kDa glucose-regulated protein)
(GRP94) (Fragment)
Length = 400
Score = 30.0 bits (66), Expect = 5.1
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 1 MKRDEEPEAKKNLDEKMKNVE-----VKETALANT--EAHVTRHIPPYNSSATTPQEAYV 53
+K DE + K+N + K E +K+ AL + +A V++ + + Q +
Sbjct: 193 VKFDESEKTKENREATEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWS 252
Query: 54 --LDKIILAEEWNYLQDI---YYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLS 108
+++I+ A+ + +DI YY+ QK+ +P IR+ + R+K+ EDD L+
Sbjct: 253 GNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHP-LIRDMLRRVKEDEDDKTVLDLA 311
Query: 109 CIL 111
+L
Sbjct: 312 VVL 314
>BGH3_HUMAN (Q15582) Transforming growth factor-beta induced protein
IG-H3 precursor (Beta IG-H3) (Kerato-epithelin)
(RGD-containing collagen associated protein) (RGD-CAP)
Length = 683
Score = 30.0 bits (66), Expect = 5.1
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 86 SFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLYHR 144
S I N I ++ +IED E + + S +N +++ Q+++ ++ FEK+P +R
Sbjct: 237 STITNNIQQIIEIEDTFETLRAAVAASGLNTMLEGNGQYTLLAPTNEAFEKIPSETLNR 295
>YLXY_BACSU (P50850) Hypothetical protein ylxY precursor
Length = 319
Score = 29.6 bits (65), Expect = 6.7
Identities = 26/106 (24%), Positives = 50/106 (46%), Gaps = 14/106 (13%)
Query: 10 KKNLDEKMKNVE----VKETALANTEAHVTRHI------PPYNSSATTPQEAYVLDKIIL 59
K N+++ K ++ +E L ++ + H+ P Y + P A++++ +
Sbjct: 82 KVNIEQSYKKMKQHGKFREKDLVYSQVKPSVHLESLQPEPIYKGNPDKPMVAFLIN---V 138
Query: 60 AEEWNYLQDIYYSLQK-EVAADFSLYPSFIRNRINRLKKIEDDSEK 104
A YL+ + LQK +V A F L +++RN + KKI D +
Sbjct: 139 AWGNEYLEKMLPILQKHQVKATFFLEGNWVRNNVQLAKKIAKDGHE 184
>PBP_STAAU (P07944) Beta-lactam-inducible penicillin-binding protein
Length = 670
Score = 29.6 bits (65), Expect = 6.7
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 1 MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 60
M++D+ + E+ K ++ LANT H+ I P N S D +A
Sbjct: 136 MQKDQSIHIENLKSERGKILDRNNVELANTGTHMRLGIVPKNVSKK--------DYKAIA 187
Query: 61 EEWNYLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKK 105
+E + +D Y K + + + PSF + ++ + D KK
Sbjct: 188 KELSISED--YINNKWIKIGYKMIPSFHFKTVKKMDEYLSDFAKK 230
>YJL2_SCHPO (O74415) Hypothetical protein C14G10.02 in chromosome
III
Length = 1568
Score = 29.3 bits (64), Expect = 8.7
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 8 EAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWN--- 64
E ++++ +K VE ++AL +A + H+ + T+ + L + WN
Sbjct: 21 EHPAHVEKVLKTVEFDKSALRYIDAILDHHLKQIYRNLTSNSPLHTLSLLQKMASWNNGL 80
Query: 65 ----YLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYL 117
Q I ++ ++ P+ I+N K+++ KK+ S +L FI +L
Sbjct: 81 ACVRVFQAIDWN--SKIFIKMLQLPNQIQNSRKGNKRLKITISKKRSSLLLLFITFL 135
>SCPA_MYCPE (Q8EX12) Segregation and condensation protein A
Length = 291
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 40 PYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKEVAAD---------FSLYPSFIRN 90
P N + E ++ K I +E+N +++YSL KE D LY +I N
Sbjct: 12 PENLESLNNTEFHISIKDITGKEFNGPFELFYSLIKERKMDILNINLVEVIQLYVDYINN 71
Query: 91 RINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSK 133
+ +L KI+D +E L YL++ K + + + + +
Sbjct: 72 YLTKL-KIDDLTE------YLLMATYLLEQKSKRILPSMDTEE 107
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1
(CHD-1)
Length = 1709
Score = 29.3 bits (64), Expect = 8.7
Identities = 21/64 (32%), Positives = 28/64 (42%), Gaps = 3/64 (4%)
Query: 82 SLYPSFIRNR-INRLKKI--EDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLP 138
+L P IRN + RLK+ DDS + S Y KD+H D S K P
Sbjct: 1516 NLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSYKKSDSRKRP 1575
Query: 139 YTLY 142
Y+ +
Sbjct: 1576 YSSF 1579
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,864,873
Number of Sequences: 164201
Number of extensions: 1054051
Number of successful extensions: 3118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3114
Number of HSP's gapped (non-prelim): 16
length of query: 239
length of database: 59,974,054
effective HSP length: 107
effective length of query: 132
effective length of database: 42,404,547
effective search space: 5597400204
effective search space used: 5597400204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC149130.2