Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149130.2 + phase: 0 
         (239 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPA3_SCHPO (O14086) DNA-directed RNA polymerase I 49 kDa polypep...    65  1e-10
GRPE_FUSNP (Q70WY9) GrpE protein (HSP-70 cofactor)                     34  0.27
RPA3_YEAST (Q01080) DNA-directed RNA polymerase I 49 kDa polypep...    33  0.60
NAGH_CLOPE (P26831) Hyaluronoglucosaminidase precursor (EC 3.2.1...    33  0.79
BGH3_PIG (O11780) Transforming growth factor-beta induced protei...    31  2.3
ENPL_PIG (Q29092) Endoplasmin precursor (94 kDa glucose-regulate...    31  3.0
Y208_BORBU (O51226) Hypothetical protein BB0208                        30  3.9
TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (V...    30  5.1
HT31_ARATH (Q04996) Homeobox protein HAT3.1                            30  5.1
ENPL_MESAU (P08712) Endoplasmin (94 kDa glucose-regulated protei...    30  5.1
BGH3_HUMAN (Q15582) Transforming growth factor-beta induced prot...    30  5.1
YLXY_BACSU (P50850) Hypothetical protein ylxY precursor                30  6.7
PBP_STAAU (P07944) Beta-lactam-inducible penicillin-binding protein    30  6.7
YJL2_SCHPO (O74415) Hypothetical protein C14G10.02 in chromosome...    29  8.7
SCPA_MYCPE (Q8EX12) Segregation and condensation protein A             29  8.7
CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 ...    29  8.7

>RPA3_SCHPO (O14086) DNA-directed RNA polymerase I 49 kDa
           polypeptide (EC 2.7.7.6) (A49)
          Length = 425

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 32/252 (12%)

Query: 14  DEKMKNVEVKETALANTEAHVT-----RHIPPYNSSATTPQEAYVLDKIILAEEWN--YL 66
           D+ + NV+    AL   E         R IPP N  A + ++AY L+ II  EE++  Y+
Sbjct: 176 DQLVSNVQKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAYKLEDIIPKEEFSAIYI 235

Query: 67  QDIYYSLQKEVAADFSLYPS--FIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQH 124
           + +  +  +   A    Y    FI  R  RL  IE+  +K+  + IL +I+ L  F    
Sbjct: 236 KPLLENPDERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--ARILYYISLLQAFLFSR 293

Query: 125 SMDGISSSKFEKL---PYTLYHRFTTMFDVTE---SRRLPPEKMNLLISYVLVLTLFSDD 178
              G   +  +KL   P  L       F  T    S ++   +++ +I Y+LVL L  D+
Sbjct: 294 RSVGNRETLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVDKIICYILVLCLIVDN 353

Query: 179 FRTDYRDIVKDLRMSTLTLRPIFEHLGCK---FISSQKVSY------------ATLPIPL 223
           + TD   +  DL + T+    +F  +GC+   +  +Q+++             A L IPL
Sbjct: 354 YSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNKTDAKNHKRAVLKIPL 413

Query: 224 TFSQIKKRKRKN 235
            F + ++ + +N
Sbjct: 414 EFPKPRRGRARN 425


>GRPE_FUSNP (Q70WY9) GrpE protein (HSP-70 cofactor)
          Length = 202

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 40/155 (25%), Positives = 62/155 (39%), Gaps = 26/155 (16%)

Query: 8   EAKKNLDEKMKNVEVKETALANTEAH-----VTRHIPPYNSSATTPQEAYVLDKIILAEE 62
           E  K ++E++KN EVKE    +   H       +H   +N       +A +       EE
Sbjct: 14  EINKEVNEELKNEEVKEETHEHEHKHGGHTCCGKHGHKHNDEEIGKLKAEI-------EE 66

Query: 63  W--NYL------QDIYYSLQKEV-----AADFSLYPSFIRNRINRLKKIEDDSEKKKLSC 109
           W   YL      Q+     +KEV      A   +   F+ +  N  + IE   E K    
Sbjct: 67  WKNEYLRKQADFQNFTKRKEKEVDELKKFASEKIITQFLGSLDNLERAIESSIESKDFDS 126

Query: 110 ILSFINYLVK-FKDQHSMDGISSSKFEKLPYTLYH 143
           +L  I  +V+  KD  S +G+   K E +   +YH
Sbjct: 127 LLKGIEMIVRNLKDIMSAEGVEEIKTEGVYDPVYH 161


>RPA3_YEAST (Q01080) DNA-directed RNA polymerase I 49 kDa
           polypeptide (EC 2.7.7.6) (A49)
          Length = 415

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 30/227 (13%)

Query: 36  RHIPPYNSSATTPQEAYVLDKIILAEEWNYLQ--DIYYSLQKEVAADFSLYPSFIRNRIN 93
           R  P  N  AT  ++ Y ++ II  +E  +++   I     KE   +   Y +  +    
Sbjct: 186 RPTPLANIDATDVEQIYPIESIIPKKELQFIRVSSILKEADKEKKLELFPYQNNSKYVAK 245

Query: 94  RLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGIS------SSKFEKLPYTLYHRFTT 147
           +L  +   S+  KL  +L +++ L+   +   ++  +      +S  E L   +  RFT 
Sbjct: 246 KLDSLTQPSQMTKLQ-LLYYLSLLLGVYENRRVNNKTKLLERLNSPPEILVDGILSRFTV 304

Query: 148 M----FDVTESRR--LPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDLRMSTLTLRPIF 201
           +    F  ++ R   + P+  + ++ Y+L + +  D+F  +   +  +L +    +  +F
Sbjct: 305 IKPGQFGRSKDRSYFIDPQNEDKILCYILAIIMHLDNFIVEITPLAHELNLKPSKVVSLF 364

Query: 202 EHLGC-------------KFISSQKVSY--ATLPIPLTFSQIKKRKR 233
             LG                  S   SY  AT+ +P    ++ +R R
Sbjct: 365 RVLGAIVKGATVAQAEAFGIPKSTAASYKIATMKVPFKLPEMTRRGR 411


>NAGH_CLOPE (P26831) Hyaluronoglucosaminidase precursor (EC
           3.2.1.35) (Hyaluronidase) (Mu toxin)
          Length = 1628

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 22/111 (19%), Positives = 54/111 (47%), Gaps = 6/111 (5%)

Query: 83  LYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMD---GISSSKFEKLPY 139
           LYP    + I +L ++ ++++ + +  +  F+N  V+F  + +     G+  +KF +L  
Sbjct: 235 LYPEEKLSEIKKLAQVGNETKNRYVYALHPFMNNPVRFDTEENYQNDLGVIKAKFTQLLE 294

Query: 140 TLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDL 190
               +F  + D   +   P +  ++ +  +  LT + ++ ++ Y D+  DL
Sbjct: 295 NDVRQFAILADDASA---PAQGASMYVKLLTDLTRWLEEQQSTYPDLKTDL 342


>BGH3_PIG (O11780) Transforming growth factor-beta induced protein
           IG-H3 precursor (Beta IG-H3) (Kerato-epithelin)
           (RGD-containing collagen associated protein) (RGD-CAP)
          Length = 683

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/59 (28%), Positives = 32/59 (53%)

Query: 86  SFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLYHR 144
           S + N I ++ +IED  E  + +   S +N L++   Q+++   S+  FEK+P    +R
Sbjct: 237 STVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPSNEAFEKIPAETLNR 295


>ENPL_PIG (Q29092) Endoplasmin precursor (94 kDa glucose-regulated
           protein) (GRP94) (GP96 homolog) (98 kDa protein kinase)
           (PPK 98) (ppk98)
          Length = 804

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 1   MKRDEEPEAKKNLDEKMKNVE-----VKETALANT--EAHVTRHIPPYNSSATTPQEAYV 53
           +K DE  ++K+N +   K  E     +K+ AL +   +A V++ +     +    Q  + 
Sbjct: 596 VKFDESEKSKENREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWS 655

Query: 54  --LDKIILAEEWNYLQDI---YYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLS 108
             +++I+ A+ +   +DI   YY+ QK+       +P  IR+ + R+K+ EDD     L+
Sbjct: 656 GNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHP-LIRDMLRRVKEDEDDKTVSDLA 714

Query: 109 CIL 111
            +L
Sbjct: 715 VVL 717


>Y208_BORBU (O51226) Hypothetical protein BB0208
          Length = 581

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 56  KIILAEEWNYLQDIY---YSLQKEVAADFSLYPSFIRN-RINRLKKIEDDSEKKKL--SC 109
           KII  ++ N  Q  Y   Y L K +     +    I+N R N ++K+ED++EKK L   C
Sbjct: 470 KIIKIQKINPNQLDYQKSYLLIKSLKTRSRILKIIIKNIRFNLIEKLEDENEKKLLPAMC 529

Query: 110 ILSFINYLVKFKDQHSM 126
            L +   LV+ K+   +
Sbjct: 530 YLIYCENLVELKNNRKI 546


>TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor
           (Vitamin E deficient 1) (Sucrose export defective 1)
          Length = 488

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 7/54 (12%)

Query: 154 SRRLPPEKMNLLISYVLVLTLF------SDDFRTDYRDIVKDLRMSTLTLRPIF 201
           ++ +PPE+ N  +S     T F       DD RTDY + VK  R    T RP++
Sbjct: 183 NKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYST-RPVY 235


>HT31_ARATH (Q04996) Homeobox protein HAT3.1
          Length = 661

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 89  RNRINRLKKIEDDSE----KKKLSCILSFINYLVKFKDQHSMDGISSSKFEKL 137
           +N+     ++ +D E    KKKL   L+ INY     D +S++G   S  EK+
Sbjct: 100 KNKTMNKGQVREDDEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKI 152


>ENPL_MESAU (P08712) Endoplasmin (94 kDa glucose-regulated protein)
           (GRP94) (Fragment)
          Length = 400

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 1   MKRDEEPEAKKNLDEKMKNVE-----VKETALANT--EAHVTRHIPPYNSSATTPQEAYV 53
           +K DE  + K+N +   K  E     +K+ AL +   +A V++ +     +    Q  + 
Sbjct: 193 VKFDESEKTKENREATEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWS 252

Query: 54  --LDKIILAEEWNYLQDI---YYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLS 108
             +++I+ A+ +   +DI   YY+ QK+       +P  IR+ + R+K+ EDD     L+
Sbjct: 253 GNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHP-LIRDMLRRVKEDEDDKTVLDLA 311

Query: 109 CIL 111
            +L
Sbjct: 312 VVL 314


>BGH3_HUMAN (Q15582) Transforming growth factor-beta induced protein
           IG-H3 precursor (Beta IG-H3) (Kerato-epithelin)
           (RGD-containing collagen associated protein) (RGD-CAP)
          Length = 683

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 86  SFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLYHR 144
           S I N I ++ +IED  E  + +   S +N +++   Q+++   ++  FEK+P    +R
Sbjct: 237 STITNNIQQIIEIEDTFETLRAAVAASGLNTMLEGNGQYTLLAPTNEAFEKIPSETLNR 295


>YLXY_BACSU (P50850) Hypothetical protein ylxY precursor
          Length = 319

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/106 (24%), Positives = 50/106 (46%), Gaps = 14/106 (13%)

Query: 10  KKNLDEKMKNVE----VKETALANTEAHVTRHI------PPYNSSATTPQEAYVLDKIIL 59
           K N+++  K ++     +E  L  ++   + H+      P Y  +   P  A++++   +
Sbjct: 82  KVNIEQSYKKMKQHGKFREKDLVYSQVKPSVHLESLQPEPIYKGNPDKPMVAFLIN---V 138

Query: 60  AEEWNYLQDIYYSLQK-EVAADFSLYPSFIRNRINRLKKIEDDSEK 104
           A    YL+ +   LQK +V A F L  +++RN +   KKI  D  +
Sbjct: 139 AWGNEYLEKMLPILQKHQVKATFFLEGNWVRNNVQLAKKIAKDGHE 184


>PBP_STAAU (P07944) Beta-lactam-inducible penicillin-binding protein
          Length = 670

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 1   MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 60
           M++D+    +    E+ K ++     LANT  H+   I P N S          D   +A
Sbjct: 136 MQKDQSIHIENLKSERGKILDRNNVELANTGTHMRLGIVPKNVSKK--------DYKAIA 187

Query: 61  EEWNYLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKK 105
           +E +  +D  Y   K +   + + PSF    + ++ +   D  KK
Sbjct: 188 KELSISED--YINNKWIKIGYKMIPSFHFKTVKKMDEYLSDFAKK 230


>YJL2_SCHPO (O74415) Hypothetical protein C14G10.02 in chromosome
           III
          Length = 1568

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 8   EAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWN--- 64
           E   ++++ +K VE  ++AL   +A +  H+     + T+    + L  +     WN   
Sbjct: 21  EHPAHVEKVLKTVEFDKSALRYIDAILDHHLKQIYRNLTSNSPLHTLSLLQKMASWNNGL 80

Query: 65  ----YLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYL 117
                 Q I ++   ++       P+ I+N     K+++    KK+ S +L FI +L
Sbjct: 81  ACVRVFQAIDWN--SKIFIKMLQLPNQIQNSRKGNKRLKITISKKRSSLLLLFITFL 135


>SCPA_MYCPE (Q8EX12) Segregation and condensation protein A
          Length = 291

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 40  PYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKEVAAD---------FSLYPSFIRN 90
           P N  +    E ++  K I  +E+N   +++YSL KE   D           LY  +I N
Sbjct: 12  PENLESLNNTEFHISIKDITGKEFNGPFELFYSLIKERKMDILNINLVEVIQLYVDYINN 71

Query: 91  RINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSK 133
            + +L KI+D +E       L    YL++ K +  +  + + +
Sbjct: 72  YLTKL-KIDDLTE------YLLMATYLLEQKSKRILPSMDTEE 107


>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1
            (CHD-1)
          Length = 1709

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/64 (32%), Positives = 28/64 (42%), Gaps = 3/64 (4%)

Query: 82   SLYPSFIRNR-INRLKKI--EDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLP 138
            +L P  IRN  + RLK+    DDS +   S       Y    KD+H  D    S   K P
Sbjct: 1516 NLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSYKKSDSRKRP 1575

Query: 139  YTLY 142
            Y+ +
Sbjct: 1576 YSSF 1579


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,864,873
Number of Sequences: 164201
Number of extensions: 1054051
Number of successful extensions: 3118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3114
Number of HSP's gapped (non-prelim): 16
length of query: 239
length of database: 59,974,054
effective HSP length: 107
effective length of query: 132
effective length of database: 42,404,547
effective search space: 5597400204
effective search space used: 5597400204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)


Medicago: description of AC149130.2