BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149127.4 + phase: 0
(323 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun... 40 0.010
AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor 38 0.030
RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 37 0.051
RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 37 0.051
RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 37 0.051
DNL1_MOUSE (P37913) DNA ligase I (EC 6.5.1.1) (Polydeoxyribonucl... 37 0.051
TAF9_MOUSE (Q8VI33) Transcription initiation factor TFIID subuni... 37 0.067
RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 37 0.067
DAN4_YEAST (P47179) Cell wall protein DAN4 precursor 37 0.067
YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C... 37 0.087
P3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.13... 37 0.087
C114_MOUSE (P19467) Cell surface antigen 114/A10 precursor (Lymp... 37 0.087
VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogeni... 36 0.11
RRPL_TSWV1 (P28976) RNA-directed RNA polymerase (EC 2.7.7.48) (L... 36 0.11
RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun... 36 0.11
HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote... 36 0.11
HM38_CAEEL (Q19720) Homeobox protein ceh-38 36 0.11
DNL1_XENLA (P51892) DNA ligase I (EC 6.5.1.1) (Polydeoxyribonucl... 36 0.11
ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in ... 36 0.11
MUC2_RAT (Q62635) Mucin 2 precursor (Intestinal mucin 2) (Fragment) 36 0.15
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RNA polymerase II subunit 1)
Length = 1599
Score = 39.7 bits (91), Expect = 0.010
Identities = 38/117 (32%), Positives = 54/117 (45%), Gaps = 10/117 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1474 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1532
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPSNARVR---YPSEPRKSASMRLSSDVNNIRDID 291
S S +P T S +P S + + TSPS + P+ P S SM S+ N ++ D
Sbjct: 1533 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMSSFSNKNKSKNQD 1588
Score = 35.0 bits (79), Expect = 0.25
Identities = 41/144 (28%), Positives = 61/144 (41%), Gaps = 8/144 (5%)
Query: 171 HFRNAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPL 230
H A + E + TS + SPS P ++S TSP+ + SP P
Sbjct: 1453 HLEMAYSRDLGERLSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPT 1511
Query: 231 SRTGSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNNIRDI 290
S + S +S S +P T S +P S + + TSPS + P+ P S + S +
Sbjct: 1512 SPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS- 1565
Query: 291 DQHPSKSKRLLKSLLSRRKSKKDD 314
PS S + S ++ KSK D
Sbjct: 1566 PTSPSYSVS-MSSFSNKNKSKNQD 1588
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor
Length = 725
Score = 38.1 bits (87), Expect = 0.030
Identities = 27/104 (25%), Positives = 54/104 (50%), Gaps = 1/104 (0%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
T TS+SS SPS + + + S +S + ++ + S P S + S SS ST+
Sbjct: 217 TSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTS 276
Query: 243 PKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNN 286
P + +ST+ +S++ ++ S S + S P +++ S+ +++
Sbjct: 277 PSS-KSTSASSTSTSSYSTSTSPSLTSSSPTLASTSPSSTSISS 319
Score = 35.4 bits (80), Expect = 0.19
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 174 NAVRATIRETPTSTSSKGNSPSP---SLQPQRVG-AFSFTSPNMAKKDLEKRTVSPHRFP 229
+ + +T PT+TS S SP S P + S TS + + + S
Sbjct: 171 STLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSS 230
Query: 230 LSRTGSM-SSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
S + S+ S+ S++ T +S+T SS+ +TSPS+ S +S S+
Sbjct: 231 TSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSA 284
Score = 34.7 bits (78), Expect = 0.33
Identities = 32/115 (27%), Positives = 49/115 (41%), Gaps = 10/115 (8%)
Query: 174 NAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRT 233
N ++ T TS SS SPS + + + TS + + SP S +
Sbjct: 180 NPTTTSLSSTSTSPSSTSTSPSST---STSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSS 236
Query: 234 GSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRY------PSEPRKSASMRLSS 282
+ +S S+T T +S+T SS+ +TSPS+ PS SAS +S
Sbjct: 237 LTSTSSSST-STSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTS 290
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 37.4 bits (85), Expect = 0.051
Identities = 35/102 (34%), Positives = 46/102 (44%), Gaps = 16/102 (15%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSPN + SP P S + S +
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772
Query: 238 SRSTTP------KTGRSTTPNSSNRATTSPSNARVRYPSEPR 273
S + TP T S +P S + + TSPS + PS PR
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS----PSSPR 1810
Score = 35.4 bits (80), Expect = 0.19
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S N + TSP+
Sbjct: 1731 SPSYSP-TSPSYSPTSPNYSPTSPN 1754
Score = 35.4 bits (80), Expect = 0.19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 183 TPTSTSSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRST 241
+P S SP SP+ +P+ G ++ SP+ + SP P S S +S S
Sbjct: 1584 SPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643
Query: 242 TPKTGRSTTPNSSNRATTSPS 262
+P T S +P S + + TSPS
Sbjct: 1644 SP-TSPSYSPTSPSYSPTSPS 1663
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1651 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1710 SPSYSP-TSPSYSPTSPSYSPTSPS 1733
Score = 34.7 bits (78), Expect = 0.33
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 20/97 (20%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TPTS S SPS +S TSPN SP P S + S +S S +
Sbjct: 1756 TPTSPSYSPTSPS----------YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 243 PKTGRST------TPNSSNRATTSPSNARVRYPSEPR 273
P + R T TP+S + + +SPS + P+ P+
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPSYS----PTSPK 1838
Score = 34.3 bits (77), Expect = 0.43
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TP S S SPS S ++S TSPN + SP P S + S +S S +
Sbjct: 1609 TPQSPSYSPTSPSYSPTSP---SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 243 PKTGRSTTPNSSNRATTSPS 262
P T S +P S + + TSPS
Sbjct: 1666 P-TSPSYSPTSPSYSPTSPS 1684
Score = 33.9 bits (76), Expect = 0.56
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S + +P T + TP S + + TSPS
Sbjct: 1745 SPNYSP-TSPNYTPTSPSYSPTSPS 1768
Score = 33.5 bits (75), Expect = 0.74
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS + SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1630 SPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1689 SPSYSP-TSPSYSPTSPSYSPTSPS 1712
Score = 32.0 bits (71), Expect = 2.1
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 182 ETPTST-SSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSS- 238
++PT T SS SP SPS P ++ TSP+ + E SP P S S +S
Sbjct: 1814 QSPTYTPSSPSYSPSSPSYSPTS-PKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSP 1872
Query: 239 -RSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
S T T TTP S + T + V P+ P+ S
Sbjct: 1873 KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 1910
Score = 31.6 bits (70), Expect = 2.8
Identities = 31/94 (32%), Positives = 45/94 (46%), Gaps = 5/94 (5%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTPK 244
T TS + SPS P ++S TSP+ + SP P S + S SS S +P
Sbjct: 1777 TPTSPNYSPTSPSYSPTSP-SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP- 1834
Query: 245 TGRSTTPNSSNRATTSP--SNARVRY-PSEPRKS 275
T TP S + + +SP + A +Y P+ P+ S
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYS 1868
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 37.4 bits (85), Expect = 0.051
Identities = 35/102 (34%), Positives = 46/102 (44%), Gaps = 16/102 (15%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSPN + SP P S + S +
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772
Query: 238 SRSTTP------KTGRSTTPNSSNRATTSPSNARVRYPSEPR 273
S + TP T S +P S + + TSPS + PS PR
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS----PSSPR 1810
Score = 35.4 bits (80), Expect = 0.19
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S N + TSP+
Sbjct: 1731 SPSYSP-TSPSYSPTSPNYSPTSPN 1754
Score = 35.4 bits (80), Expect = 0.19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 183 TPTSTSSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRST 241
+P S SP SP+ +P+ G ++ SP+ + SP P S S +S S
Sbjct: 1584 SPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643
Query: 242 TPKTGRSTTPNSSNRATTSPS 262
+P T S +P S + + TSPS
Sbjct: 1644 SP-TSPSYSPTSPSYSPTSPS 1663
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1651 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1710 SPSYSP-TSPSYSPTSPSYSPTSPS 1733
Score = 34.7 bits (78), Expect = 0.33
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 20/97 (20%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TPTS S SPS +S TSPN SP P S + S +S S +
Sbjct: 1756 TPTSPSYSPTSPS----------YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 243 PKTGRST------TPNSSNRATTSPSNARVRYPSEPR 273
P + R T TP+S + + +SPS + P+ P+
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPSYS----PTSPK 1838
Score = 34.3 bits (77), Expect = 0.43
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TP S S SPS S ++S TSPN + SP P S + S +S S +
Sbjct: 1609 TPQSPSYSPTSPSYSPTSP---SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 243 PKTGRSTTPNSSNRATTSPS 262
P T S +P S + + TSPS
Sbjct: 1666 P-TSPSYSPTSPSYSPTSPS 1684
Score = 33.9 bits (76), Expect = 0.56
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S + +P T + TP S + + TSPS
Sbjct: 1745 SPNYSP-TSPNYTPTSPSYSPTSPS 1768
Score = 33.5 bits (75), Expect = 0.74
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS + SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1630 SPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1689 SPSYSP-TSPSYSPTSPSYSPTSPS 1712
Score = 32.0 bits (71), Expect = 2.1
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 182 ETPTST-SSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSS- 238
++PT T SS SP SPS P ++ TSP+ + E SP P S S +S
Sbjct: 1814 QSPTYTPSSPSYSPSSPSYSPTS-PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1872
Query: 239 -RSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
S T T TTP S + T + V P+ P+ S
Sbjct: 1873 KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 1910
Score = 31.2 bits (69), Expect = 3.7
Identities = 29/91 (31%), Positives = 41/91 (44%), Gaps = 6/91 (6%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTPK 244
T TS + SPS P ++S TSP+ + SP P S + S SS S +P
Sbjct: 1777 TPTSPNYSPTSPSYSPTSP-SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP- 1834
Query: 245 TGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
T TP S + + +SP P+ P+ S
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYT----PTSPKYS 1861
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 37.4 bits (85), Expect = 0.051
Identities = 35/102 (34%), Positives = 46/102 (44%), Gaps = 16/102 (15%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSPN + SP P S + S +
Sbjct: 211 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 269
Query: 238 SRSTTP------KTGRSTTPNSSNRATTSPSNARVRYPSEPR 273
S + TP T S +P S + + TSPS + PS PR
Sbjct: 270 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS----PSSPR 307
Score = 35.4 bits (80), Expect = 0.19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 183 TPTSTSSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRST 241
+P S SP SP+ +P+ G ++ SP+ + SP P S S +S S
Sbjct: 81 SPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 140
Query: 242 TPKTGRSTTPNSSNRATTSPS 262
+P T S +P S + + TSPS
Sbjct: 141 SP-TSPSYSPTSPSYSPTSPS 160
Score = 35.4 bits (80), Expect = 0.19
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 169 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 227
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S N + TSP+
Sbjct: 228 SPSYSP-TSPSYSPTSPNYSPTSPN 251
Score = 35.0 bits (79), Expect = 0.25
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 155 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 213
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
S S +P T S +P S + + TSPS + P+ P S
Sbjct: 214 SPSYSP-TSPSYSPTSPSYSPTSPSYS----PTSPNYS 246
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 134 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 192
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 193 SPSYSP-TSPSYSPTSPSYSPTSPS 216
Score = 34.7 bits (78), Expect = 0.33
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 20/97 (20%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TPTS S SPS +S TSPN SP P S + S +S S +
Sbjct: 253 TPTSPSYSPTSPS----------YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 302
Query: 243 PKTGRST------TPNSSNRATTSPSNARVRYPSEPR 273
P + R T TP+S + + +SPS + P+ P+
Sbjct: 303 PSSPRYTPQSPTYTPSSPSYSPSSPSYS----PTSPK 335
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSP-----SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SP SPS P ++S TSP+ + SP P S + S +
Sbjct: 120 SPTSPSYSPTSPNYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 178
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 179 SPSYSP-TSPSYSPTSPSYSPTSPS 202
Score = 34.3 bits (77), Expect = 0.43
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT 242
TP S S SPS S ++S TSPN + SP P S + S +S S +
Sbjct: 106 TPQSPSYSPTSPSYSPTSP---SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 162
Query: 243 PKTGRSTTPNSSNRATTSPS 262
P T S +P S + + TSPS
Sbjct: 163 P-TSPSYSPTSPSYSPTSPS 181
Score = 33.9 bits (76), Expect = 0.56
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 183 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 241
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S + +P T + TP S + + TSPS
Sbjct: 242 SPNYSP-TSPNYTPTSPSYSPTSPS 265
Score = 32.0 bits (71), Expect = 2.1
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 182 ETPTST-SSKGNSP-SPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSS- 238
++PT T SS SP SPS P ++ TSP+ + E SP P S S +S
Sbjct: 311 QSPTYTPSSPSYSPSSPSYSPTS-PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 369
Query: 239 -RSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
S T T TTP S + T + V P+ P+ S
Sbjct: 370 KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 407
Score = 31.2 bits (69), Expect = 3.7
Identities = 29/91 (31%), Positives = 41/91 (44%), Gaps = 6/91 (6%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTPK 244
T TS + SPS P ++S TSP+ + SP P S + S SS S +P
Sbjct: 274 TPTSPNYSPTSPSYSPTSP-SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP- 331
Query: 245 TGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
T TP S + + +SP P+ P+ S
Sbjct: 332 TSPKYTPTSPSYSPSSPEYT----PTSPKYS 358
>DNL1_MOUSE (P37913) DNA ligase I (EC 6.5.1.1)
(Polydeoxyribonucleotide synthase [ATP])
Length = 916
Score = 37.4 bits (85), Expect = 0.051
Identities = 31/125 (24%), Positives = 48/125 (37%), Gaps = 19/125 (15%)
Query: 151 TNSTKSKYIGCHLDDEDDWHHFRNAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTS 210
T ++ + C +DED+ A + P S S + + PSP P+ F+ +S
Sbjct: 56 TGRKVAQVLSCEGEDEDE------APGTPKVQKPVSDSEQSSPPSPDTCPENSPVFNCSS 109
Query: 211 PNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPS 270
P +SP FP RT +R PK T N T + R +
Sbjct: 110 P---------MDISPSGFPKRRT----ARKQLPKRTIQDTLEEQNEDKTKTAKKRKKEEE 156
Query: 271 EPRKS 275
P++S
Sbjct: 157 TPKES 161
>TAF9_MOUSE (Q8VI33) Transcription initiation factor TFIID subunit 9
(Transcription initiation factor TFIID 31 kDa subunit)
(TAFII-31) (TAFII-32) (TAFII32)
Length = 264
Score = 37.0 bits (84), Expect = 0.067
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 196 PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPH---RFPLSRTGSMSSRSTTPKTGRST--T 250
P L P R + T+PN K L+K+ +P P GS+SSR +TP G T T
Sbjct: 113 PRLPPDR---YCLTAPNYRLKSLQKKAPAPAGRITVPRLSVGSVSSRPSTPTLGTPTPQT 169
Query: 251 PNSSNRATTSPSNARVRY------PSEPRKSASMRLSSDVNNI 287
+ S + T S R+ P AS+ +S V N+
Sbjct: 170 MSVSTKVGTPMSLTGQRFTVQMPASQSPAVKASIPATSTVQNV 212
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (Fragment)
Length = 902
Score = 37.0 bits (84), Expect = 0.067
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 778 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 836
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSAS 277
S S +P T S +P S + + TSPS + PS P S S
Sbjct: 837 SPSYSP-TSPSYSPTSPSYSPTSPSYS----PSSPSYSPS 871
Score = 35.8 bits (81), Expect = 0.15
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 792 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 850
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSAS 277
S S +P T S +P+S + + +SPS + PS P S S
Sbjct: 851 SPSYSP-TSPSYSPSSPSYSPSSPSYS----PSSPSYSPS 885
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 729 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPT 787
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 788 SPSYSP-TSPSYSPTSPSYSPTSPS 811
Score = 32.3 bits (72), Expect = 1.6
Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS P P ++S TSP+ + SP P S + S +
Sbjct: 757 SPTSPSYSPTSPSYSPTSPFYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 815
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 816 SPSYSP-TSPSYSPTSPSYSPTSPS 839
Score = 32.0 bits (71), Expect = 2.1
Identities = 28/85 (32%), Positives = 42/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S S
Sbjct: 806 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 864
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P + S +P+S + + +SP+
Sbjct: 865 SPSYSP-SSPSYSPSSPSYSPSSPT 888
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor
Length = 1161
Score = 37.0 bits (84), Expect = 0.067
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 184 PTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTP 243
PTSTS+ S S P S TS + +P S T + S+ STTP
Sbjct: 122 PTSTSTTTTKSSTSTTPTTT-ITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTP 180
Query: 244 KTG-RSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
T STTP +S +TT ++ P+ S + S+
Sbjct: 181 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTST 220
Score = 35.4 bits (80), Expect = 0.19
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 178 ATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRT----VSPHRFPLSRT 233
+T TPT++++ + + + + T+P + T +P S T
Sbjct: 156 STTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTT 215
Query: 234 GSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
+ S+ STTP T STTP +S +TTS ++ + P+ S + S+
Sbjct: 216 PTTSTTSTTPTT--STTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTST 262
Score = 35.0 bits (79), Expect = 0.25
Identities = 27/106 (25%), Positives = 46/106 (42%), Gaps = 2/106 (1%)
Query: 179 TIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPL-SRTGSMS 237
T T T+ ++ S +P+ + T+P + +T + P S T +
Sbjct: 199 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTP 258
Query: 238 SRSTTPKTGR-STTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
+ STTP T ST P +S +TTS ++ P+ S++ SS
Sbjct: 259 TTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSS 304
Score = 34.7 bits (78), Expect = 0.33
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 178 ATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRT-VSPHRFPLSRTGSM 236
+T TPT++++ + + + + T+P + T +P S T
Sbjct: 183 STTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQT 242
Query: 237 SSRSTTPKT-GRSTTPNSSNRATTSPSN 263
S++STTP T STTP +S TTS ++
Sbjct: 243 STKSTTPTTSSTSTTPTTSTTPTTSTTS 270
Score = 34.3 bits (77), Expect = 0.43
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRT----VSPHRFPLSRTGSMSS 238
T T+T+ S +P+ + + T+P + T +P S T + S+
Sbjct: 125 TSTTTTKSSTSTTPTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTST 184
Query: 239 RSTTPKTG-RSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
STTP T STTP +S +TT ++ P+ S + S+
Sbjct: 185 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTST 229
Score = 32.3 bits (72), Expect = 1.6
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 179 TIRETPTSTSSKGNSPSPSLQP--QRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSM 236
TI T ++TS+ + + S P TS + +P S T +
Sbjct: 141 TITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT 200
Query: 237 SSRSTTPKTG-RSTTPNSSNRATT 259
S+ STTP T STTP +S +TT
Sbjct: 201 STTSTTPTTSTTSTTPTTSTTSTT 224
Score = 32.0 bits (71), Expect = 2.1
Identities = 24/88 (27%), Positives = 44/88 (49%), Gaps = 4/88 (4%)
Query: 178 ATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPL-SRTGSM 236
+T TPT TS+ +P+ S P + + T+ + K T S P S T +
Sbjct: 210 STTSTTPT-TSTTSTTPTTSTTPTT--STTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTT 266
Query: 237 SSRSTTPKTGRSTTPNSSNRATTSPSNA 264
S+ ST P T ++T ++++ +T+P+ +
Sbjct: 267 STTSTAPTTSTTSTTSTTSTISTAPTTS 294
Score = 32.0 bits (71), Expect = 2.1
Identities = 28/122 (22%), Positives = 54/122 (43%), Gaps = 3/122 (2%)
Query: 178 ATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPL-SRTGSM 236
+T TPT++++ + + + + T+P + T + P S T +
Sbjct: 174 STTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTT 233
Query: 237 SSRSTTPKTG-RSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNNIRDIDQHPS 295
S+ STT +T +STTP +S+ +TT P+ + S + + +S + I P+
Sbjct: 234 STTSTTSQTSTKSTTPTTSSTSTT-PTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPT 292
Query: 296 KS 297
S
Sbjct: 293 TS 294
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein
C19G12.16c in chromosome I precursor
Length = 670
Score = 36.6 bits (83), Expect = 0.087
Identities = 33/128 (25%), Positives = 56/128 (42%), Gaps = 9/128 (7%)
Query: 184 PTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTT- 242
PT+ S+ G+ S S P +FS TS + + E T + + S + ++ +TT
Sbjct: 519 PTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTT 578
Query: 243 ----PKTGRSTTPNSSNRATTSPSNARV--RYPSEPRKSASMRLSSDVNNIRDIDQHPSK 296
P+ ST +S + + S+A + YPS + LSS +++ H S
Sbjct: 579 CSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSS--SSVHSSSAHSSS 636
Query: 297 SKRLLKSL 304
S+ SL
Sbjct: 637 SRSSSMSL 644
>P3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)
(PI3-kinase) (PtdIns-3-kinase) (PI3K)
Length = 1858
Score = 36.6 bits (83), Expect = 0.087
Identities = 30/101 (29%), Positives = 47/101 (45%), Gaps = 12/101 (11%)
Query: 186 STSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSSRSTTPKT 245
S+S+ NSPS SL T+P +++ + P + T S SS +T T
Sbjct: 393 SSSNSTNSPSTSLP---------TTPRLSQPTTSYTQLIPSQQQQQPTESNSSSNTNTTT 443
Query: 246 GRSTTPNSSNRATTS---PSNARVRYPSEPRKSASMRLSSD 283
S++ +SS+ T S PSN +R + R S +SS+
Sbjct: 444 TSSSSSSSSSSLTISSPQPSNNSIRISAFGRSSTQFTISSN 484
>C114_MOUSE (P19467) Cell surface antigen 114/A10 precursor
(Lymphocyte antigen 64)
Length = 573
Score = 36.6 bits (83), Expect = 0.087
Identities = 33/116 (28%), Positives = 56/116 (47%), Gaps = 6/116 (5%)
Query: 176 VRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNM-----AKKDLEKRTVSP-HRFP 229
V ++ + + T++SS G SP ++Q Q G+ S S A ++ SP
Sbjct: 16 VGSSSQASSTTSSSGGTSPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQ 75
Query: 230 LSRTGSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVN 285
S T S S ++ P T +S +P SS++A+T+ S++ P +S S SS +
Sbjct: 76 ASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQAS 131
Score = 36.6 bits (83), Expect = 0.087
Identities = 33/107 (30%), Positives = 52/107 (47%), Gaps = 6/107 (5%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNM-----AKKDLEKRTVSP-HRFPLSRTGSMSS 238
T++SS G SP ++Q Q G+ S S A ++ SP S T S S
Sbjct: 79 TTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSG 138
Query: 239 RSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVN 285
++ P T +S +P SS++A+T+ S++ P +S S SS V+
Sbjct: 139 GASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQVS 185
Score = 33.1 bits (74), Expect = 0.96
Identities = 31/104 (29%), Positives = 49/104 (46%), Gaps = 6/104 (5%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNM-----AKKDLEKRTVSP-HRFPLSRTGSMSS 238
T++SS G SP ++Q Q G+ S S A ++ SP S T S S
Sbjct: 106 TTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSG 165
Query: 239 RSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
++ P T +S +P SS++ +T+ S++ P +S S SS
Sbjct: 166 GASPPTTVQSQSPGSSSQVSTTTSSSGGASPPTTVQSQSPGSSS 209
>VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogenin)
[Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII); YGP40]
Length = 1850
Score = 36.2 bits (82), Expect = 0.11
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 174 NAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRT 233
N V A P + +S +S + S + S +SPN KK +++ + ++
Sbjct: 1108 NTVLAEFGTEPDAKTSSSSSSASSTATSSSSS-SASSPNR-KKPMDEEENDQVKQARNKD 1165
Query: 234 GSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNNIRDIDQH 293
S SSRS S + NSS R+++ SN+ R S S+S SS ++ +
Sbjct: 1166 ASSSSRS-------SKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSK 1218
Query: 294 PSKSKRLLKSLLSRRKS 310
S S S SR +S
Sbjct: 1219 SSSSSSKSSSSSSRSRS 1235
>RRPL_TSWV1 (P28976) RNA-directed RNA polymerase (EC 2.7.7.48) (L
protein)
Length = 2875
Score = 36.2 bits (82), Expect = 0.11
Identities = 19/103 (18%), Positives = 55/103 (52%), Gaps = 5/103 (4%)
Query: 29 DSLTDLKNLRTQLYSAAEYFELSYTNDDQKQILVETLKDYAVKALINTVDHLGSVAYKVS 88
D + K+L +L E+F Y D + ++T+K+ + +L ++ G+++ ++
Sbjct: 2356 DIIESQKSLVLRLPEVGEFFSDMYKTADSETETIKTIKNRLMTSL-TFIEAFGNLSQQIK 2414
Query: 89 DLLDEKVTEVFGE---DLRLSCIEQRIKTCQGFMDHEGHTQQS 128
+++D+ + E E ++R +C+E ++ C+ +++ + ++
Sbjct: 2415 EIVDDDIRETMDEFLMNIRDTCLE-GLENCKSVEEYDSYLDEN 2456
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RNA polymerase II subunit 1) (B220)
Length = 1733
Score = 36.2 bits (82), Expect = 0.11
Identities = 30/85 (35%), Positives = 40/85 (46%), Gaps = 5/85 (5%)
Query: 182 ETPTS----TSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
E PTS SS G SP+ A+S TSP+ + SP P S + S +
Sbjct: 1528 EAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1587
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1588 SPSYSP-TSPSYSPTSPSYSPTSPS 1611
Score = 34.7 bits (78), Expect = 0.33
Identities = 30/85 (35%), Positives = 41/85 (47%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1629
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1630 SPSYSP-TSPSYSPTSPSYSPTSPS 1653
Score = 34.7 bits (78), Expect = 0.33
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S S +
Sbjct: 1606 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1664
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKS 275
S S +P T S +P S + + TSPS + P+ P S
Sbjct: 1665 SPSYSP-TSPSYSPTSPSYSPTSPSYS----PTSPNYS 1697
Score = 33.5 bits (75), Expect = 0.74
Identities = 30/85 (35%), Positives = 40/85 (46%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1643
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + TSPS
Sbjct: 1644 SPSYSP-TSPSYSPTSPAYSPTSPS 1667
Score = 33.5 bits (75), Expect = 0.74
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS + SPS PS P ++S TSP+ + SP P S + S +
Sbjct: 1550 SPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S + + TSPS
Sbjct: 1609 SPSYSP-TSPSYSPTSPSYSPTSPS 1632
Score = 31.6 bits (70), Expect = 2.8
Identities = 31/85 (36%), Positives = 40/85 (46%), Gaps = 14/85 (16%)
Query: 183 TPTSTSSKGNSPS-----PSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMS 237
+PTS S SPS PS P ++S TSP + SP P S + S +
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYS-------PTSPSYSPTSPSYSPT 1678
Query: 238 SRSTTPKTGRSTTPNSSNRATTSPS 262
S S +P T S +P S N + TSPS
Sbjct: 1679 SPSYSP-TSPSYSPTSPNYSPTSPS 1702
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein
2)
Length = 634
Score = 36.2 bits (82), Expect = 0.11
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 231 SRTGSMSSRSTTPKTGRSTTPNSSNRATT 259
S + S SS STTPKT STTP SS ATT
Sbjct: 211 SSSSSSSSSSTTPKTSASTTPESSVPATT 239
>HM38_CAEEL (Q19720) Homeobox protein ceh-38
Length = 641
Score = 36.2 bits (82), Expect = 0.11
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 222 TVSPHRFPLSRTGSMSSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLS 281
T+SPH T S S+ S T T T ++ A+ +P + PS SAS+ LS
Sbjct: 52 TISPHPI----TPSASTSSATSATEEPATSSAPQLASLAPMSMSSEQPSSSFSSASL-LS 106
Query: 282 SDVNNIRDIDQHPSKSKRLLKSLL--SRRKSKKDDTLYTYLDE 322
S I++ + + LL L SRR+ D Y+ E
Sbjct: 107 SSYETIKNEPEFSGSTAGLLSPLHVDSRRRESHDFNTSPYIKE 149
>DNL1_XENLA (P51892) DNA ligase I (EC 6.5.1.1)
(Polydeoxyribonucleotide synthase [ATP])
Length = 1070
Score = 36.2 bits (82), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 237 SSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNNIRDIDQHPSK 296
S+R TP + R TP S+ + T P +AR P RK A +S++N +D P
Sbjct: 107 SARKETPPSARKETPPSARKET--PQSARKETPPSARKDAKSEGASEMNTSQDF-VSPCS 163
Query: 297 SKRLLKSLLS 306
SK + L S
Sbjct: 164 SKSIDSPLCS 173
>ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1338
Score = 36.2 bits (82), Expect = 0.11
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 185 TSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTV--SPHRFPLSRTGSMS-SRST 241
+S+ S +SPS S P V + +SP ++D + V +PH P + GS S S S
Sbjct: 581 SSSPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVHANPHERP--KMGSRSTSESR 638
Query: 242 TPKTGRSTTPNSSNRATTSPSNAR 265
+ RS + +SS+R + SP +R
Sbjct: 639 SRSRSRSRSASSSSRKSLSPGVSR 662
Score = 33.5 bits (75), Expect = 0.74
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 137 HKRYILPVGETLHGTNSTKSKYIGCHLDDEDDWHHFRNAVRATIRETPTS----TSSKGN 192
H +L L GT TK++ + DE A ++++ E T + + +
Sbjct: 470 HPAQLLRSLSPLSGTTDTKAESPAGRVSDESV---LPLAQKSSLPECSTQKGVESEREKS 526
Query: 193 SPSPSLQPQRVGAFSFTSPNMAKKDLEK---RTVSPHRFPLSRTGSMSSRSTTPKTGRST 249
+P P + A T M K+ LE+ R S FP +G S+ S++ RS+
Sbjct: 527 APLPLTVEEFAPAKGITEEPMKKQSLEQKEGRRASHALFP-EHSGKQSADSSS---SRSS 582
Query: 250 TPNSSNRATTSPSNARVRYPSEPRKSASMRLSSDVNNIRDIDQHPSKSKRLLKSLLSRRK 309
+P+SS+ + SPS V + + R + + + P R SR +
Sbjct: 583 SPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVHANPHERPKMGSRSTSESRSRSR 642
Query: 310 SK 311
S+
Sbjct: 643 SR 644
>MUC2_RAT (Q62635) Mucin 2 precursor (Intestinal mucin 2) (Fragment)
Length = 1513
Score = 35.8 bits (81), Expect = 0.15
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 179 TIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPLSRTGSMSS 238
T T +TS ++ SP+ P TSP + T SP P + T S +
Sbjct: 1419 TSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTP 1478
Query: 239 RSTTPKTGRSTTPNSSNRATTSPSNARVRYPS 270
TT T + +P +S TTSP+ + + P+
Sbjct: 1479 SPTTSTTSPTPSPTTS---TTSPTTSPITSPT 1507
Score = 33.1 bits (74), Expect = 0.96
Identities = 26/106 (24%), Positives = 47/106 (43%), Gaps = 6/106 (5%)
Query: 183 TPTSTSSKGNSPSPSLQPQRVGAFS-----FTSPNMAK-KDLEKRTVSPHRFPLSRTGSM 236
+PT+++ ++P P+ P + S TSP + T SP S T S
Sbjct: 1392 SPTTSTPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSP 1451
Query: 237 SSRSTTPKTGRSTTPNSSNRATTSPSNARVRYPSEPRKSASMRLSS 282
++ +T+P T ++ S +TTSP+ + + P S + +S
Sbjct: 1452 TTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTS 1497
Score = 32.3 bits (72), Expect = 1.6
Identities = 31/92 (33%), Positives = 40/92 (42%), Gaps = 8/92 (8%)
Query: 171 HFRNAVRATIRETPTSTSSKGNSPSPSLQPQRVGAFSFTSPNMAKKDLEKRTVSPHRFPL 230
H + V T T TST+S SP+ S S TSP + T SP P
Sbjct: 1429 HITSTVSPTTSPT-TSTTSPTTSPTTSTTSPTT---STTSPTPSPTT---STTSPTPSPT 1481
Query: 231 SRTGSMSSRSTTPKTGRSTTP-NSSNRATTSP 261
+ T S + TT T +T+P S +TTSP
Sbjct: 1482 TSTTSPTPSPTTSTTSPTTSPITSPTTSTTSP 1513
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.128 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,785,564
Number of Sequences: 164201
Number of extensions: 1521010
Number of successful extensions: 5538
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 4974
Number of HSP's gapped (non-prelim): 500
length of query: 323
length of database: 59,974,054
effective HSP length: 110
effective length of query: 213
effective length of database: 41,911,944
effective search space: 8927244072
effective search space used: 8927244072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC149127.4