BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149127.3 + phase: 0
(218 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y495_ARATH (Q9M160) Putative protein At4g00950 58 1e-08
ALE1_STACP (O05156) Glycyl-glycine endopeptidase ALE-1 precursor... 32 1.1
GLIC_MOUSE (Q9ESN4) Gliacolin precursor (C1q-like protein) 31 2.0
VRP1_YEAST (P37370) Verprolin 31 2.5
SYC_HALN1 (Q9HQL9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 31 2.5
TFE3_MOUSE (Q64092) Transcription factor E3 (Fragment) 30 3.3
GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15; ... 30 3.3
GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p... 30 3.3
YNR9_YEAST (P53880) Hypothetical 17.6 kDa protein in NPR1-RPS3 i... 30 5.7
LON_CAMJE (O69300) ATP-dependent protease La (EC 3.4.21.53) 30 5.7
GAG_MLVBM (P29167) Gag polyprotein [Contains: Core protein p15; ... 30 5.7
SAN1_YEAST (P22470) SAN1 protein 29 7.4
NUD1_YEAST (P32336) NUD1 protein 29 7.4
GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:... 29 7.4
GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
GAG_MLVCB (P27460) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; ... 29 7.4
>Y495_ARATH (Q9M160) Putative protein At4g00950
Length = 291
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/112 (33%), Positives = 53/112 (46%), Gaps = 15/112 (13%)
Query: 25 LSLPTILTRPGFSSEAPTPPPRTTV-ISIPFKWEEAPGKPRSCHTRPELREREVN----- 78
+ LP + T+P S + + P +++ S+PF WEE PGKP+ T
Sbjct: 16 MKLPVLPTKPNTHSHSMSSPIHSSISASVPFSWEEEPGKPKQHSTSSSSSSSSSPLTSYS 75
Query: 79 ----NVVRALELPPRLLSLERESTGNIYAPSPTTVLEGPYVGRAVSFTTSYR 126
++LELPPRL LE++ SP TV +GPY S TTS R
Sbjct: 76 SSPFETHKSLELPPRLHLLEKDGGSVTKLHSPITVFDGPY-----SMTTSKR 122
>ALE1_STACP (O05156) Glycyl-glycine endopeptidase ALE-1 precursor
(EC 3.4.24.75)
Length = 362
Score = 32.0 bits (71), Expect = 1.1
Identities = 42/177 (23%), Positives = 70/177 (38%), Gaps = 25/177 (14%)
Query: 9 PDHDDELRSNYDTPK-KLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGK---PR 64
P + E + D PK + P + P EAP + P +EAP K P+
Sbjct: 55 PKVEQEAPAKADAPKVEQEAPAKVDAPKVEQEAPAK------VDAPKVEQEAPAKADAPK 108
Query: 65 SCHTRPELREREVNNVVRALELPPRLLSLERESTGNIYAPSPTTVLEGPYVGRA--VSFT 122
R +RE +N + L G Y P P + G + G ++
Sbjct: 109 VEQKRTFVREAAQSNHSASW--------LNNYKKGYGYGPYPLGINGGNHYGVDFFMNVG 160
Query: 123 TSYRDNNNKDSVNFGSSRWGG-----LKKNNRIDREGSFDFSSWSVEGGDKVKITRV 174
T R ++ V G + +GG L +N+ + R+ S ++V+ GD+VK ++
Sbjct: 161 TPVRAISDGKIVEAGWTNYGGGNEIGLVENDGVHRQWYMHLSKFNVKVGDRVKAGQI 217
>GLIC_MOUSE (Q9ESN4) Gliacolin precursor (C1q-like protein)
Length = 255
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 14/71 (19%)
Query: 137 GSSRWGGLKKNNRI-------DREGSFDFSSWSV----EGGDKVKITRVKRRGSFSHGTS 185
G+S W L KNN++ D + ++D++S SV E GD+V I K G +HG +
Sbjct: 184 GTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYI---KLDGGKAHGGN 240
Query: 186 HFWVCLFSYFL 196
+ FS F+
Sbjct: 241 NNKYSTFSGFI 251
>VRP1_YEAST (P37370) Verprolin
Length = 817
Score = 30.8 bits (68), Expect = 2.5
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 3 SENNKKPDHDDELRSNYDTPKKLSLPTILTR--PGFSSEAPTPPPRTTVISIPFKWEEAP 60
+EN+K P P S P I T P AP PP V S P K AP
Sbjct: 299 TENHKSPSQP---------PLPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSAPKKATSAP 349
Query: 61 GKPRSCHTRPELREREVNNVVRALELPPRL 90
P P N V+A +PP L
Sbjct: 350 APPPP--PLPAAMSSASTNSVKATPVPPTL 377
>SYC_HALN1 (Q9HQL9) Cysteinyl-tRNA synthetase (EC 6.1.1.16)
(Cysteine--tRNA ligase) (CysRS)
Length = 494
Score = 30.8 bits (68), Expect = 2.5
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 81 VRALELPPRLLSLERESTGNIYAPSPTTVLEGPYVGRAVSFTTSY--RDNNNKDSVNFGS 138
VR LE +S S GN + S GP V R + +TSY R ++ +V+ +
Sbjct: 278 VRLLETDGEKMS---SSLGNFFTVSNAVAERGPNVVRMLLVSTSYTQRQTYSEATVSEAT 334
Query: 139 SRWGGLKKNNRIDREGSFDFSSWSVEGGDKVKITRVKRRGSFS 181
RW L++ + + ++ + D ++ RG F+
Sbjct: 335 QRWERLQRAHERAADAIDSVAAHAKPADDALRTAVADARGEFA 377
>TFE3_MOUSE (Q64092) Transcription factor E3 (Fragment)
Length = 446
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 24 KLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRA 83
KL+ + PG SS P P P T + P AP P + T E+E+++V+
Sbjct: 83 KLASQALTPPPGPSSAQPLPAPETAHATGP--TGSAPNSPMALLTIGSSSEKEIDDVI-- 138
Query: 84 LELPPRLLSLERESTGNI--YAPSPTTVLEGP 113
++SLE + Y P T L+ P
Sbjct: 139 ----DEIISLESSYNDEMLSYLPGGTAGLQLP 166
>GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30]
Length = 468
Score = 30.4 bits (67), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +LR + + ++VR E
Sbjct: 384 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAE 428
>GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 538
Score = 30.4 bits (67), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +LR + + ++VR E
Sbjct: 384 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAE 428
>YNR9_YEAST (P53880) Hypothetical 17.6 kDa protein in NPR1-RPS3
intergenic region
Length = 145
Score = 29.6 bits (65), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 187 FWVCLFSYFLFIFILFYISYPFMFHSLFRIVL 218
+W FS+F F+ F+ + F F F I+L
Sbjct: 39 YWQSCFSFFFLFFLFFFFFFTFQFLVAFPILL 70
>LON_CAMJE (O69300) ATP-dependent protease La (EC 3.4.21.53)
Length = 791
Score = 29.6 bits (65), Expect = 5.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 129 NNKDSVNFGSSRWGGLKKNNRIDREGSFDFSSWSVEGGDKVKITRVKRRG 178
N K+ F + ++KNN ++ G + +W+ GGD +K+ VK +G
Sbjct: 579 NTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAVKIKG 628
>GAG_MLVBM (P29167) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 537
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 383 PEDPGQETNVSMSFIWQSAPAIGRKLERLEDLKSKTLGDLVREAE 427
>SAN1_YEAST (P22470) SAN1 protein
Length = 610
Score = 29.3 bits (64), Expect = 7.4
Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 29/197 (14%)
Query: 3 SENNKKPDHDDELRSNYDTPKKLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGK 62
S + P + +N +P+ + +P L F +P P P + S A
Sbjct: 387 SSTTQNPPSNSGGSNNNQSPRWVPIPLTL----FQFHSPNPNPSASDSSAS---PSAANG 439
Query: 63 PRSCHTRPELREREVNNVVRALELPPRLLSLERESTGNIYAPSPTTV------------- 109
P S +T + + N + L+ + T AP TV
Sbjct: 440 PNSNNTSSDATDPHHNRLRAVLDHIFNVAQRGTSDTSATTAPGAQTVHNQGRNDSSSSDT 499
Query: 110 LEGPYVGRAVS-----FTTSYRDNNNKDSVNFGSSRWGGLKKNNRIDREGSFDFSSWSVE 164
+G +S FT RDNNN ++ + R G +NNR + S +S+ +
Sbjct: 500 TQGSSFLENISRLTGHFTNGSRDNNNDNNHSNDQQRGGSTGENNR-NNLFSSGVASYRNQ 558
Query: 165 GGDKVKITRVKRRGSFS 181
GD +T V+ R + S
Sbjct: 559 NGD---VTTVELRNNNS 572
>NUD1_YEAST (P32336) NUD1 protein
Length = 851
Score = 29.3 bits (64), Expect = 7.4
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 6/63 (9%)
Query: 127 DNNNKDSVNFGSSRWGGLKKNNRIDREGSFDFSSWS------VEGGDKVKITRVKRRGSF 180
+NNN +S+N + K+ + D SF+FSS S + G K K+ + +
Sbjct: 234 NNNNNNSININNKDNARTKEEDEEDTSNSFEFSSSSSMSSSQTQSGRKSKVLKKPPLNTI 293
Query: 181 SHG 183
S G
Sbjct: 294 SPG 296
>GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 538
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 384 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAE 428
>GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 540
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 386 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE 430
>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:
Matrix protein p15; RNA binding phosphoprotein p12;
Capsid protein p30; Nucleocapsid protein p10]
Length = 538
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 384 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAE 428
>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 529
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 375 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE 419
>GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 536
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 382 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE 426
>GAG_MLVCB (P27460) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 536
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 382 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE 426
>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 537
Score = 29.3 bits (64), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALE 85
P P + T +S+ F W+ AP R +L+ + + ++VR E
Sbjct: 383 PEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE 427
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,531,817
Number of Sequences: 164201
Number of extensions: 1322636
Number of successful extensions: 3688
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3668
Number of HSP's gapped (non-prelim): 32
length of query: 218
length of database: 59,974,054
effective HSP length: 106
effective length of query: 112
effective length of database: 42,568,748
effective search space: 4767699776
effective search space used: 4767699776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC149127.3